Non-Coding RNA Search

Ss1.1-Spl1-SPL01A070056.5

Sequence:


               
               AGGTGAAATCACTTCAAGTTAGAGATTCAGCTGATGAGGTTTATAAAATTGCCCCTTTCT
AGCTGCTCTGTTAGGAATTCTGGTTTTTTGATACCTTTTTCTTGTCTGCAAACCAGAATT
TGATTTTTTGGTCTTGCATTTCAAAAAGACTTTGAATCTGTTTAGTAGATTCCATATCCT
TGCATTTCAGTGTTTTATATGTACTACTTAAGTTAAATAGTTAAAAGCTTTTAAATAGTT
GAGCTTTTTAATGTTGACACTTTATTTTGTACCTATTTATATATGTATGTATATCTTAGA
AAAGCACTTTGTTAAAAAAAATGCATTTTATATGATTCCTGCCATTTGCTGCTAAATCTG
GGCTGGTCAGAATGCTGCAGCGATACTTGATCTAAATAAAAACCTGGCAGTAAAATGTAG
AGTGAAAGTTAAATCCTCTTGCTGTTTTAACTTTATCATAAAGATGACATAGGCAAGCTG
TGCAGCTTTACATTTTAACCAGGGGACTCTGTGGCATTTAAAACCGTCTAGAAATGGTTG
TACTTTAATGCCAGTAATAATCTGCTTCCTCTATTGTCATTAAAATATATACGTTTAGTG
TATCACACAAACAAATCTTATAAGGGTAACGTAAAAGTCCCAACAATTGTACATGTTCTG
TTTTTGAAAATCGTGGCATGTGTTTTTGGGTGAAGATCATTAGAGAAGAGCTCTCTAAAG
GTTTTCTGTGTTCATACATGGTAGCTCATAATGAAGTCCAGAATCTTACTTTAAGTGAAG
GCATTGTGAATTCACTCAAATAAACCCATGTTCCAAAAGCAAATAGAAACTTTGACCCTA
GTACTACTATGATTAAAAAACAAAAACACAAAAAACATTCTTCCTCGTTTCAGATACACT
GGATTCTTTATAGAATTTGTCTCCATATGAAAGCATGCTGTCCAGTTGTTCTTGTTAAGA
TCTTGTCTGAGTTTGGAATGGGGTGCCACACTTTTTCAGTCAATATGATTGCTTGTTCTA
CTGTACCATGTATGATTCTTGTCCTTTCCTATGTCCTTCATGACAGATTATGATGTGGCT
TTATATGGTGCCTTACTTGTACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGAAATCACTTCAAGTTAGAGATTCAGCTGATGAGGTTTATAAAATTGCCCCTTTCT
AGCTGCTCTGTTAGGAATTCTGGTTTTTTGATACCTTTTTCTTGTCTGCAAACCAGAATT
TGATTTTTTGGTCTTGCATTTCAAAAAGACTTTGAATCTGTTTAGTAGATTCCATATCCT
TGCATTTCAGTGTTTTATATGTACTACTTAAGTTAAATAGTTAAAAGCTTTTAAATAGTT
GAGCTTTTTAATGTTGACACTTTATTTTGTACCTATTTATATATGTATGTATATCTTAGA
AAAGCACTTTGTTAAAAAAAATGCATTTTATATGATTCCTGCCATTTGCTGCTAAATCTG
GGCTGGTCAGAATGCTGCAGCGATACTTGATCTAAATAAAAACCTGGCAGTAAAATGTAG
AGTGAAAGTTAAATCCTCTTGCTGTTTTAACTTTATCATAAAGATGACATAGGCAAGCTG
TGCAGCTTTACATTTTAACCAGGGGACTCTGTGGCATTTAAAACCGTCTAGAAATGGTTG
TACTTTAATGCCAGTAATAATCTGCTTCCTCTATTGTCATTAAAATATATACGTTTAGTG
TATCACACAAACAAATCTTATAAGGGTAACGTAAAAGTCCCAACAATTGTACATGTTCTG
TTTTTGAAAATCGTGGCATGTGTTTTTGGGTGAAGATCATTAGAGAAGAGCTCTCTAAAG
GTTTTCTGTGTTCATACATGGTAGCTCATAATGAAGTCCAGAATCTTACTTTAAGTGAAG
GCATTGTGAATTCACTCAAATAAACCCATGTTCCAAAAGCAAATAGAAACTTTGACCCTA
GTACTACTATGATTAAAAAACAAAAACACAAAAAACATTCTTCCTCGTTTCAGATACACT
GGATTCTTTATAGAATTTGTCTCCATATGAAAGCATGCTGTCCAGTTGTTCTTGTTAAGA
TCTTGTCTGAGTTTGGAATGGGGTGCCACACTTTTTCAGTCAATATGATTGCTTGTTCTA
CTGTACCATGTATGATTCTTGTCCTTTCCTATGTCCTTCATGACAGATTATGATGTGGCT
TTATATGGTGCCTTACTTGTACAT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               38-269, + strand, RNAz p=0.89815
               

               
               305-581, - strand, RNAz p=0.958202
               

               
               621-739, - strand, RNAz p=0.726577

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-269, + strand, RNAz p=0.89815
               

               
               305-581, - strand, RNAz p=0.958202
               

               
               621-739, - strand, RNAz p=0.726577

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_153607, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_153607, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1104, gnl|bosTau2|chr3 (61237991-61236871)
               

               
               1-1104, gnl|Hg17|chr5 (172495699-172496821)
               

               
               1-1104, gnl|Mm7|chr17 (24958469-24959540)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1104, gnl|bosTau2|chr3 (61237991-61236871)
               

               
               1-1104, gnl|Hg17|chr5 (172495699-172496821)
               

               
               1-1104, gnl|Mm7|chr17 (24958469-24959540)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               duo (0.172801)
               

               
               che (0.136314)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               che (0.136314)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	38-269, + strand, RNAz p=0.89815
	305-581, - strand, RNAz p=0.958202
	621-739, - strand, RNAz p=0.726577

	1-1104, gnl\|bosTau2\|chr3 (61237991-61236871)
	1-1104, gnl\|Hg17\|chr5 (172495699-172496821)
	1-1104, gnl\|Mm7\|chr17 (24958469-24959540)