Non-Coding RNA Search

Ss1.1-Spl1-SPL01A070083.5

Sequence:


               
               TTCATAAAGAAGTAGAAAAGTATCTGTCCCAGGCAAATCAAGAACAAAGTGATACTATCC
TACTGGACTGTAGAAACTTCTATGAAAGCAAAATAGGACGATTCCAGGGTTGCTTAGCCC
CAGACATCAGGAAATTCAGTTACTTCCCTAGCTACGTTGACAAAAATCTAGAACTTTTCA
AAGAGAAGAGGGTGCTGATGTATTGCACTGGGGGCATCCGTTGTGAGCGAGGTTCAGCCT
ACCTCAAAGCCAAGGGAGTGTGCAAGGAAGTGTTCCAGCTCAAGGGCGGCATCCACAAGT
ACCTCGAGGAGTTTCCTGATGGTTTTTACAAAGGGAAGCTGTTTGTTTTTGATGAGCGTT
ACGCCTTATCCTTCAACAGTGACATAGTATCAGACTGTTCATACTGTGGGGCCCCATGGG
ACCAGTATAGACTCTGCTCGACTCCCCAGTGCCGCCAGCTCGTCTTGACCTGCCCCACCT
GCCAAGGACAAGGATTCACGGCCTGCTGTGTTACATGTCAAGACAAAGGGAGCAGGCAGG
CTGCAAACCCAGGCCATAGCAGCTTTAAAGAGGAATGCGAGTGTACAGCCCGACGGCCAC
GGGTACCCAGGGAGCCCTTACAGCGGGAGCGAATCCCCTCAAGTGCAGAGCCCAGGCTGA
GTGTTGATGAGGATGGGCCATGCTTAGGTGAGCGGCCCCGTCTGGATCTCCCCAAGCCTT
CACAGAGTTAGGTTTTGGGTGACTGTGTATTGGACGATATCAGGGCCACAGTGACAGAGA
AACAGGGAACTTTAGTGCTGCCAGAGCCACCATGGTGAGCTGGTTACCATGTTGGCCTCC
TGGCCTTCACAAGAGTTGGGTGCTCATCTCTTACCTGAGCATTCTGACCAAAAGACGCTA
GAGCACAGTAAAAGATGAGCTGTGTGGGATCCCACAGCTGCAGAGAGAGCCTAGTGACCA
GGTCACACCCTCTCTCTGCCATACTGCAGGCCTGGGAGTAGTCATTTTCCTTATTAGCAA
ACTGGTCTGGGAGTTTCCGTCGTGGCACAGTGGAAACAAATCTGACTAGTATCCATGAGG
ACGCGGGATTGATCCCTGGCCTCACTCAGTGGGTCAGGGATCCGGTGCTGCTATGAGCTG
TAGTATAAGTCACAGCTCAGATCTCGAGTTGCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCATAAAGAAGTAGAAAAGTATCTGTCCCAGGCAAATCAAGAACAAAGTGATACTATCC
TACTGGACTGTAGAAACTTCTATGAAAGCAAAATAGGACGATTCCAGGGTTGCTTAGCCC
CAGACATCAGGAAATTCAGTTACTTCCCTAGCTACGTTGACAAAAATCTAGAACTTTTCA
AAGAGAAGAGGGTGCTGATGTATTGCACTGGGGGCATCCGTTGTGAGCGAGGTTCAGCCT
ACCTCAAAGCCAAGGGAGTGTGCAAGGAAGTGTTCCAGCTCAAGGGCGGCATCCACAAGT
ACCTCGAGGAGTTTCCTGATGGTTTTTACAAAGGGAAGCTGTTTGTTTTTGATGAGCGTT
ACGCCTTATCCTTCAACAGTGACATAGTATCAGACTGTTCATACTGTGGGGCCCCATGGG
ACCAGTATAGACTCTGCTCGACTCCCCAGTGCCGCCAGCTCGTCTTGACCTGCCCCACCT
GCCAAGGACAAGGATTCACGGCCTGCTGTGTTACATGTCAAGACAAAGGGAGCAGGCAGG
CTGCAAACCCAGGCCATAGCAGCTTTAAAGAGGAATGCGAGTGTACAGCCCGACGGCCAC
GGGTACCCAGGGAGCCCTTACAGCGGGAGCGAATCCCCTCAAGTGCAGAGCCCAGGCTGA
GTGTTGATGAGGATGGGCCATGCTTAGGTGAGCGGCCCCGTCTGGATCTCCCCAAGCCTT
CACAGAGTTAGGTTTTGGGTGACTGTGTATTGGACGATATCAGGGCCACAGTGACAGAGA
AACAGGGAACTTTAGTGCTGCCAGAGCCACCATGGTGAGCTGGTTACCATGTTGGCCTCC
TGGCCTTCACAAGAGTTGGGTGCTCATCTCTTACCTGAGCATTCTGACCAAAAGACGCTA
GAGCACAGTAAAAGATGAGCTGTGTGGGATCCCACAGCTGCAGAGAGAGCCTAGTGACCA
GGTCACACCCTCTCTCTGCCATACTGCAGGCCTGGGAGTAGTCATTTTCCTTATTAGCAA
ACTGGTCTGGGAGTTTCCGTCGTGGCACAGTGGAAACAAATCTGACTAGTATCCATGAGG
ACGCGGGATTGATCCCTGGCCTCACTCAGTGGGTCAGGGATCCGGTGCTGCTATGAGCTG
TAGTATAAGTCACAGCTCAGATCTCGAGTTGCTGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16551861|dbj|BAB71188.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16551861|dbj|BAB71188.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-1029, gnl|bosTau2|chr3 (12648711-12647675)
               

               
               10-1029, gnl|Hg17|chr9 (97448068-97443955)
               

               
               10-1029, gnl|Mm7|chr4 (46134350-46130330)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-1029, gnl|bosTau2|chr3 (12648711-12647675)
               

               
               10-1029, gnl|Hg17|chr9 (97448068-97443955)
               

               
               10-1029, gnl|Mm7|chr4 (46134350-46130330)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               med (0.116252)

	10-1029, gnl\|bosTau2\|chr3 (12648711-12647675)
	10-1029, gnl\|Hg17\|chr9 (97448068-97443955)
	10-1029, gnl\|Mm7\|chr4 (46134350-46130330)