Ss1.1-Spl1-SPL01A070101.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTCAGCATAATTTTGCCCACAATTTCTTCCATATCCTGACACCAAAAGGAAGGAATGG GCTACGGCAGGCAGGCAGGAAGAGGGGGAAGCAGGTAGAGCTTTGGGGTTAGGTCTGTAA GGTCACCCCTGCCACCCCCTCCAAAAGAAGGGCCTGACCACACCCAGGAGAGAATGGCCC TAAAAACCTTATTTTTATACTTGTGAGTAAATAAACAGATATTTTTTTTACAAAAATAAC TTCTGGATATATCAGTGTTTTTGATGTTAAAGGAAAGTACTCCTCTGTCGTAAATTATTT ATTGGAAGATAACTTTGTAAAAGCTGCTGTTTGCCCTGGCTTGGTTTCATACACTGATTT ATTTTTCTACGCCAGGCAGTAGAACTTCTCTGCCTCTGAGGAGCAGGCTGACCCCTCCAG TGGAGACCAGCATTGATGTAGGATGCTGCTAAGCGCCTTTTGCCACCACCCCCCACTCAC GATTTGATTAACATCCCCCCTGAGGATGGGAGTGTTGGGGAGAGGAAGCCTGGCTGCTCC CAGACTCCAAGAGCCCTCACCTGCCGTCACCCAGAATGACACCCTTGCCCATCAGATCAG CAGTGGGGCTCGCCCCAGGCGTGCCAAGGGCAGAGCTCTCACTTCATGGTTGGCACTGGC GTCGGGGGGGGAACGGGTGCCCAAGAGTGCGGCTGCCCCAGCATGGGGTTCCCACGCGTG TCCAGTGGCTGGGCCGCCCCCAGCTTTCCTGAGGCTGGGCCTATAGACGGCAGAGACTTT TGGCTGAAAGGTGGGCTCGCTCTCTGCGTTATAGCTTCTCTCTTCTCCCTGTTCCTGCAA ACCGCAAGCAGAGGCGAGGGCAAGCTTGACCACTCGCTCCCAGACACACAGCACAAGTCA TCGCAATGTTCCATGTGTGGTCTGCGCAGGCTTCGCAGGGGATGGGAGGGAGACCAAGAG TGAATATAACTTAAAATGGAAGCATACTTTTTATAATTTTTCTTTTTAAAACTTTGTGAA ATTATTTCAGATACATATTTTAGTGTTGAGGCAGATTAGTATATAGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTCAGCATAATTTTGCCCACAATTTCTTCCATATCCTGACACCAAAAGGAAGGAATGG GCTACGGCAGGCAGGCAGGAAGAGGGGGAAGCAGGTAGAGCTTTGGGGTTAGGTCTGTAA GGTCACCCCTGCCACCCCCTCCAAAAGAAGGGCCTGACCACACCCAGGAGAGAATGGCCC TAAAAACCTTATTTTTATACTTGTGAGTAAATAAACAGATATTTTTTTTACAAAAATAAC TTCTGGATATATCAGTGTTTTTGATGTTAAAGGAAAGTACTCCTCTGTCGTAAATTATTT ATTGGAAGATAACTTTGTAAAAGCTGCTGTTTGCCCTGGCTTGGTTTCATACACTGATTT ATTTTTCTACGCCAGGCAGTAGAACTTCTCTGCCTCTGAGGAGCAGGCTGACCCCTCCAG TGGAGACCAGCATTGATGTAGGATGCTGCTAAGCGCCTTTTGCCACCACCCCCCACTCAC GATTTGATTAACATCCCCCCTGAGGATGGGAGTGTTGGGGAGAGGAAGCCTGGCTGCTCC CAGACTCCAAGAGCCCTCACCTGCCGTCACCCAGAATGACACCCTTGCCCATCAGATCAG CAGTGGGGCTCGCCCCAGGCGTGCCAAGGGCAGAGCTCTCACTTCATGGTTGGCACTGGC GTCGGGGGGGGAACGGGTGCCCAAGAGTGCGGCTGCCCCAGCATGGGGTTCCCACGCGTG TCCAGTGGCTGGGCCGCCCCCAGCTTTCCTGAGGCTGGGCCTATAGACGGCAGAGACTTT TGGCTGAAAGGTGGGCTCGCTCTCTGCGTTATAGCTTCTCTCTTCTCCCTGTTCCTGCAA ACCGCAAGCAGAGGCGAGGGCAAGCTTGACCACTCGCTCCCAGACACACAGCACAAGTCA TCGCAATGTTCCATGTGTGGTCTGCGCAGGCTTCGCAGGGGATGGGAGGGAGACCAAGAG TGAATATAACTTAAAATGGAAGCATACTTTTTATAATTTTTCTTTTTAAAACTTTGTGAA ATTATTTCAGATACATATTTTAGTGTTGAGGCAGATTAGTATATAGCC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 81-267, - strand, RNAz p=0.999943 | |
| 207-341, - strand, RNAz p=0.982416 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 81-267, - strand, RNAz p=0.999943 | |
| 207-341, - strand, RNAz p=0.982416 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 81-267, BP152941 full-length enriched swine cDNA library, adult ovary Sus (dbj|BP152941.1|), blast E-value=0, identity=94.65% | |
| 81-267, BP154934 full-length enriched swine cDNA library, adult ovary Sus (dbj|BP154934.1|), blast E-value=0, identity=95.72% | |
| 83-205, 208375 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE754765.1|), blast E-value=2e-22, identity=88.71% | |
| 83-205, UMC-bof_0B01-003-h03 Ovarian Follicle bof Bos taurus cDNA 3', mRNA (gb|CV983794.1|), blast E-value=2e-22, identity=88.71% | |
| 177-267, PADT0811004_A21R porcine adipose tissue cDNA library (PADT) Sus (gb|EB412699.1|), blast E-value=2e-28, identity=91.21% | |
| 83-205, LB03059.CR_N01 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE380549.1|), blast E-value=2e-22, identity=88.71% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 81-267, BP152941 full-length enriched swine cDNA library, adult ovary Sus (dbj|BP152941.1|), blast E-value=0, identity=94.65% | |
| 81-267, BP154934 full-length enriched swine cDNA library, adult ovary Sus (dbj|BP154934.1|), blast E-value=0, identity=95.72% | |
| 83-205, 208375 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE754765.1|), blast E-value=2e-22, identity=88.71% | |
| 83-205, UMC-bof_0B01-003-h03 Ovarian Follicle bof Bos taurus cDNA 3', mRNA (gb|CV983794.1|), blast E-value=2e-22, identity=88.71% | |
| 177-267, PADT0811004_A21R porcine adipose tissue cDNA library (PADT) Sus (gb|EB412699.1|), blast E-value=2e-28, identity=91.21% | |
| 83-205, LB03059.CR_N01 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE380549.1|), blast E-value=2e-22, identity=88.71% |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_012448, - |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 2-440, gnl|bosTau2|chr19 (36712143-36711706) | |
| 2-440, gnl|canFam2|chr9 (24034851-24034358) | |
| 2-440, gnl|echTel1|scaffold_319035 (94248-94699) | |
| 2-440, gnl|hg17|chr17 (37605487-37605979) | |
| 2-440, gnl|Hg17|chr17 (37606001-37605561) | |
| 2-440, gnl|loxAfr1|scaffold_2644 (13679-14162) | |
| 2-440, gnl|mm7|chr11 (100890408-100890843) | |
| 2-440, gnl|Mm7|chr11 (100890864-100890471) | |
| 2-440, gnl|monDom2|scaffold_18 (52564359-52564902) | |
| 2-440, gnl|oryCun1|scaffold_167308 (15301-14884) | |
| 2-440, gnl|panTro1|chr19 (40808073-40808570) | |
| 2-440, gnl|rheMac2|chr16 (52308105-52308602) | |
| 2-440, gnl|rn3|chr10 (89729454-89729896) | |
| 592-1065, gnl|bosTau2|chr19 (36711531-36711046) | |
| 592-1065, gnl|canFam2|chr9 (24035517-24034926) | |
| 592-1065, gnl|dasNov1|scaffold_10064 (43903-43259) | |
| 592-1065, gnl|echTel1|scaffold_319035 (93650-94187) | |
| 592-1065, gnl|hg17|chr17 (37604733-37605403) | |
| 592-1065, gnl|Hg17|chr17 (37605359-37604859) | |
| 592-1065, gnl|loxAfr1|scaffold_2644 (12963-13595) | |
| 592-1065, gnl|mm7|chr11 (100889785-100890370) | |
| 592-1065, gnl|Mm7|chr11 (100890327-100889857) | |
| 592-1065, gnl|monDom2|scaffold_18 (52563627-52564272) | |
| 592-1065, gnl|oryCun1|scaffold_167308 (15774-15354) | |
| 592-1065, gnl|panTro1|chr19 (40807372-40807989) | |
| 592-1065, gnl|rheMac2|chr16 (52307390-52308021) | |
| 592-1065, gnl|rn3|chr10 (89728862-89729412) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-440, gnl|bosTau2|chr19 (36712143-36711706) | |
| 2-440, gnl|canFam2|chr9 (24034851-24034358) | |
| 2-440, gnl|echTel1|scaffold_319035 (94248-94699) | |
| 2-440, gnl|hg17|chr17 (37605487-37605979) | |
| 2-440, gnl|Hg17|chr17 (37606001-37605561) | |
| 2-440, gnl|loxAfr1|scaffold_2644 (13679-14162) | |
| 2-440, gnl|mm7|chr11 (100890408-100890843) | |
| 2-440, gnl|Mm7|chr11 (100890864-100890471) | |
| 2-440, gnl|monDom2|scaffold_18 (52564359-52564902) | |
| 2-440, gnl|oryCun1|scaffold_167308 (15301-14884) | |
| 2-440, gnl|panTro1|chr19 (40808073-40808570) | |
| 2-440, gnl|rheMac2|chr16 (52308105-52308602) | |
| 2-440, gnl|rn3|chr10 (89729454-89729896) | |
| 592-1065, gnl|bosTau2|chr19 (36711531-36711046) | |
| 592-1065, gnl|canFam2|chr9 (24035517-24034926) | |
| 592-1065, gnl|dasNov1|scaffold_10064 (43903-43259) | |
| 592-1065, gnl|echTel1|scaffold_319035 (93650-94187) | |
| 592-1065, gnl|hg17|chr17 (37604733-37605403) | |
| 592-1065, gnl|Hg17|chr17 (37605359-37604859) | |
| 592-1065, gnl|loxAfr1|scaffold_2644 (12963-13595) | |
| 592-1065, gnl|mm7|chr11 (100889785-100890370) | |
| 592-1065, gnl|Mm7|chr11 (100890327-100889857) | |
| 592-1065, gnl|monDom2|scaffold_18 (52563627-52564272) | |
| 592-1065, gnl|oryCun1|scaffold_167308 (15774-15354) | |
| 592-1065, gnl|panTro1|chr19 (40807372-40807989) | |
| 592-1065, gnl|rheMac2|chr16 (52307390-52308021) | |
| 592-1065, gnl|rn3|chr10 (89728862-89729412) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nmm (0.265604) | |
| ill (0.175593) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.265604) | |
| ill (0.175593) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) |