Ss1.1-Spl1-SPL01A080101.5
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AGGCTGGAGGGCGAGTAGGGTGGTAACTCAGGCAGGTATGAGCAGCACTCTCCCGACCTA
CCCTCCTCCCCTTATCCCGTTGTACAAATGGAGAGGTAGACTTGCGGAGAGGCGACCTCT
TCGTGCGGACCTGAGGGGGCAGCTGCGCCCTTGATTTCAAGCCTCAGCTTTTTCCTGGGC
AGCGCTGTGGCAGACAGAGCCGCTCCTGGAGTTCGAAGGACTTGTGTCTTACGTGGGACA
GTTCCTAGCTTTGGGCAGGTTGCTTCCCGTCTCCGAGTCTCCTTTTCCTCTCTGTTTGTC
TCTGAAGATGTGGCACTTAGCAGGATAGCCATATCTGAGGACCAGACCTGTGTTGAGGAC
CCAGAACCTTTGACCTCTCCATCTCCACCCAGCTGAGGCCAGTCACCATCCTCAGCAGCT
GACATCACAAGACTTGGGGACCTTGGCGAGTGGTCAAGGAATCTTTACTGAGACGTGAAA
CTTTGGGGCAGAATGCTGAGGGCCCTCATATCTGCCCTGGGGTGGAGGGGAGGCATTCAG
GGCTGTGCCTTCAGCTCGCAGCAACCACATCTGACTCCCACTGGGTTGCTGAGTGCCACA
GAGTTGATCAGCCACTGGACAGCAGTCTTTGAGAAAAGGGGTATCCCTGAGGCCCGAGAA
AACATTTCAGAGTCTGAGGCCAGGACTTTTGACCCAGCCCCTGACCCGCTGGCAGCTGCG
GTATATCCAGGAGCTGAGTAGCTACCGATTGCAAAGGATGCCGGTGCAGTACATCCTTGG
TGAGTGGGACTTTCATGGGCTCAGTCTGAAGATGGTGCCCCCAGTGTTTATCCCTCGACC
AGAAACAGAGGAGCTGGTTGAATGGGTGCTAGAGGAGGTGACCCAGAGGCCCCATGCGGT
GGGAGCCCATGGTGGCCCCCTCATCCTAGAGGTGGGCTGTGGATCAGGAGCTATCTCCCT
CAGCCTGCTGAGCAAGCTCCCCGAGAGCCAAGTCATTGCTGTGGACAAGGGAGAAGCTGC
CATCTGCCTGACCCATGAGAATGCCCAGAGGCTTCAGTTACAGGACAGGATTCGGATCAT
CCCGCTCGATGTGACCTTAGAGCAGAACTGGGCGCACCTTCTACCCTGGGGCCCCGTGGA
CCTGGTCATCAGCAACCCTCCCTACGTCTTCCACCGGGACATGGAGCAGCTGGCCCCTGA
GATCCTCAGCTATGAAGACCCAACCGCCCTGGATGGTGGGGAGGAGGGCATGGATATCAT
TACCCACATCCTGGCCTTGGCACCTCGACTCCTGAAGGACTCTGGAAGCATCTTCTTAGA
AGTGGACCCAAGACACCCAGAGCTCATCGGCAGCTGGCTCCAGAGCCGACCTGACCTGTC
CCTCAATCTTGTGGCTGTGCGCAGGGACTTCTGTGGGAGGCCCCGGTTCCTACATATCCA
GAGGTCTGAGCCATAGCATGGTTGTCTTGTGGATGCCTGGCCAAGGCCCCGACCTGCCAG
AGTGCCTGAATGACACTTCTTCCTGGAATGCTACTTGGAGGGAGGTGGATGCTTCAGAAC
CCCAGATGCTCTGTGATTCCCCATGCTCTACATTTCTAGGAAACGTAGCGGTAGATGCTA
AGGTGGGGGTATCCTTCCTGGGGGAGCCAAGTGCAAGGGCACGCACAGTCCTGCTCAGGA
GCTGAGCGGACCCAGGTTCTCAGTCTGGCTCCATCACAATGTGTGGCCAGGGAAGGTTGC
TGGGTCTCTGTGGGTGGAACTGCTCTGGGAATATTGAGAGATGTGGCCAATAAAGTGGCA
AGAAAACAGTGAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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AGGCTGGAGGGCGAGTAGGGTGGTAACTCAGGCAGGTATGAGCAGCACTCTCCCGACCTA
CCCTCCTCCCCTTATCCCGTTGTACAAATGGAGAGGTAGACTTGCGGAGAGGCGACCTCT
TCGTGCGGACCTGAGGGGGCAGCTGCGCCCTTGATTTCAAGCCTCAGCTTTTTCCTGGGC
AGCGCTGTGGCAGACAGAGCCGCTCCTGGAGTTCGAAGGACTTGTGTCTTACGTGGGACA
GTTCCTAGCTTTGGGCAGGTTGCTTCCCGTCTCCGAGTCTCCTTTTCCTCTCTGTTTGTC
TCTGAAGATGTGGCACTTAGCAGGATAGCCATATCTGAGGACCAGACCTGTGTTGAGGAC
CCAGAACCTTTGACCTCTCCATCTCCACCCAGCTGAGGCCAGTCACCATCCTCAGCAGCT
GACATCACAAGACTTGGGGACCTTGGCGAGTGGTCAAGGAATCTTTACTGAGACGTGAAA
CTTTGGGGCAGAATGCTGAGGGCCCTCATATCTGCCCTGGGGTGGAGGGGAGGCATTCAG
GGCTGTGCCTTCAGCTCGCAGCAACCACATCTGACTCCCACTGGGTTGCTGAGTGCCACA
GAGTTGATCAGCCACTGGACAGCAGTCTTTGAGAAAAGGGGTATCCCTGAGGCCCGAGAA
AACATTTCAGAGTCTGAGGCCAGGACTTTTGACCCAGCCCCTGACCCGCTGGCAGCTGCG
GTATATCCAGGAGCTGAGTAGCTACCGATTGCAAAGGATGCCGGTGCAGTACATCCTTGG
TGAGTGGGACTTTCATGGGCTCAGTCTGAAGATGGTGCCCCCAGTGTTTATCCCTCGACC
AGAAACAGAGGAGCTGGTTGAATGGGTGCTAGAGGAGGTGACCCAGAGGCCCCATGCGGT
GGGAGCCCATGGTGGCCCCCTCATCCTAGAGGTGGGCTGTGGATCAGGAGCTATCTCCCT
CAGCCTGCTGAGCAAGCTCCCCGAGAGCCAAGTCATTGCTGTGGACAAGGGAGAAGCTGC
CATCTGCCTGACCCATGAGAATGCCCAGAGGCTTCAGTTACAGGACAGGATTCGGATCAT
CCCGCTCGATGTGACCTTAGAGCAGAACTGGGCGCACCTTCTACCCTGGGGCCCCGTGGA
CCTGGTCATCAGCAACCCTCCCTACGTCTTCCACCGGGACATGGAGCAGCTGGCCCCTGA
GATCCTCAGCTATGAAGACCCAACCGCCCTGGATGGTGGGGAGGAGGGCATGGATATCAT
TACCCACATCCTGGCCTTGGCACCTCGACTCCTGAAGGACTCTGGAAGCATCTTCTTAGA
AGTGGACCCAAGACACCCAGAGCTCATCGGCAGCTGGCTCCAGAGCCGACCTGACCTGTC
CCTCAATCTTGTGGCTGTGCGCAGGGACTTCTGTGGGAGGCCCCGGTTCCTACATATCCA
GAGGTCTGAGCCATAGCATGGTTGTCTTGTGGATGCCTGGCCAAGGCCCCGACCTGCCAG
AGTGCCTGAATGACACTTCTTCCTGGAATGCTACTTGGAGGGAGGTGGATGCTTCAGAAC
CCCAGATGCTCTGTGATTCCCCATGCTCTACATTTCTAGGAAACGTAGCGGTAGATGCTA
AGGTGGGGGTATCCTTCCTGGGGGAGCCAAGTGCAAGGGCACGCACAGTCCTGCTCAGGA
GCTGAGCGGACCCAGGTTCTCAGTCTGGCTCCATCACAATGTGTGGCCAGGGAAGGTTGC
TGGGTCTCTGTGGGTGGAACTGCTCTGGGAATATTGAGAGATGTGGCCAATAAAGTGGCA
AGAAAACAGTGAAAAAAAAAAAAA
|
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gi|61836917|ref|XP_585855.1| |
Protein identifier
|
gi|61836917|ref|XP_585855.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
321-660, gnl|bosTau2|chr22 (38835690-38836031) |
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321-660, gnl|canFam2|chr20 (41796326-41796062) |
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321-660, gnl|dasNov1|scaffold_206297 (3599-3287) |
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321-660, gnl|echTel1|scaffold_293557 (457-175) |
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321-660, gnl|hg17|chr3 (50583313-50583624) |
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321-660, gnl|Hg17|chr3 (50583363-50583725) |
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321-660, gnl|mm7|chr9 (107066848-107066594) |
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321-660, gnl|Mm7|chr9 (107066834-107066491) |
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321-660, gnl|oryCun1|scaffold_202694 (142711-142989) |
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321-660, gnl|panTro1|chr2 (52163298-52163609) |
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321-660, gnl|rheMac2|chr2 (85845348-85845037) |
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321-660, gnl|rn3|chr8 (112597467-112597213) |
| |
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849-985, gnl|bosTau2|chr22 (38840894-38841030) |
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849-985, gnl|Hg17|chr3 (50589485-50589621) |
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849-985, gnl|Mm7|chr9 (107061029-107060893) |
| |
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1092-1214, gnl|bosTau2|chr22 (38842611-38842733) |
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1092-1214, gnl|Hg17|chr3 (50591247-50591371) |
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1092-1214, gnl|Mm7|chr9 (107058889-107058767) |
| |
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1305-1420, gnl|bosTau2|chr22 (38843827-38843942) |
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1305-1420, gnl|Hg17|chr3 (50592550-50592665) |
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1305-1420, gnl|Mm7|chr9 (107057738-107057623) |
| |
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1568-1809, gnl|bosTau2|chr22 (38844259-38844508) |
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1568-1809, gnl|Mm7|chr9 (107057362-107057155) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
321-660, gnl|bosTau2|chr22 (38835690-38836031) |
|
321-660, gnl|canFam2|chr20 (41796326-41796062) |
|
321-660, gnl|dasNov1|scaffold_206297 (3599-3287) |
|
321-660, gnl|echTel1|scaffold_293557 (457-175) |
|
321-660, gnl|hg17|chr3 (50583313-50583624) |
|
321-660, gnl|Hg17|chr3 (50583363-50583725) |
|
321-660, gnl|mm7|chr9 (107066848-107066594) |
|
321-660, gnl|Mm7|chr9 (107066834-107066491) |
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321-660, gnl|oryCun1|scaffold_202694 (142711-142989) |
|
321-660, gnl|panTro1|chr2 (52163298-52163609) |
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321-660, gnl|rheMac2|chr2 (85845348-85845037) |
|
321-660, gnl|rn3|chr8 (112597467-112597213) |
| |
|
849-985, gnl|bosTau2|chr22 (38840894-38841030) |
|
849-985, gnl|Hg17|chr3 (50589485-50589621) |
|
849-985, gnl|Mm7|chr9 (107061029-107060893) |
| |
|
1092-1214, gnl|bosTau2|chr22 (38842611-38842733) |
|
1092-1214, gnl|Hg17|chr3 (50591247-50591371) |
|
1092-1214, gnl|Mm7|chr9 (107058889-107058767) |
| |
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1305-1420, gnl|bosTau2|chr22 (38843827-38843942) |
|
1305-1420, gnl|Hg17|chr3 (50592550-50592665) |
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1305-1420, gnl|Mm7|chr9 (107057738-107057623) |
| |
|
1568-1809, gnl|bosTau2|chr22 (38844259-38844508) |
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1568-1809, gnl|Mm7|chr9 (107057362-107057155) |
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amn (0.417711) |
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ill (0.175593) |
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nco (0.161734) |
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eli (0.151814) |
|
spl (0.143184) |
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eru (0.120048) |
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ecc (0.115035) |
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cty (0.10408) |
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jej (0.0989218) |
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eje (0.0988338) |
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ldo (0.0970026) |
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amn (0.417711) |
|
ill (0.175593) |
|
nco (0.161734) |
|
eli (0.151814) |
|
spl (0.143184) |
|
eru (0.120048) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
