Non-Coding RNA Search

Ss1.1-Spl1-SPL01A090074.5

Sequence:


               
               GCGCCGCCCGCCCTGCGTTTGTCCCCAGCCCAAGGCCGGCCCCCTTCGCTCGTGTCCATC
ACTACGTGTGGAAGCGCCGCCAGCATGTCGGAGAAGCTGCCTTACAAAGTCGCTGACATC
AGCCTGGCCGCCTGGGGACGCAAGGCCCTGGACCTCGCAGAGAATGAGATGCCAGGCCTG
ATGCGCATGCGGGAGATGTATTCCGCCTCCAAGCCACTGAAAGGCGCCCGTATTGCCGGC
TGCCTGCACATGACCGTGGAGACAGCTGTACTCATTGAGACCCTCGTCGCCCTGGGTGCT
GAGGTGCGGTGGTCCAGCTGCAACATTTTCTCTACTCAGGACCATGCAGCAGCTGCCATT
GCCAAGGCTGGCATTCCAGTGTATGCCTGGAAGGGTGAAACGGACGAGGAGTATCTGTGG
TGCATTGAGCAGACACTGTACTTCAAGGATGGGCCCCTCAACATGATCCTGGATGATGGT
GGTGACCTTACCAACCTCGTCCACACCAAGTACCCAGAGCTCCTGTCAGGCATCCGAGGC
ATCTCTGAAGAGACCACAACGGGAGTCCACAACCTGTACAAGATGAAGGCCAACGGGATC
CTGAAGGTGCCTGCCATCAACGTTAATGACTCTGTCACCAAGAGCAAGTTTGACAACCTC
TATGGCTGCCGGGAGTCCCTCATAGATGGCATCAAGCGGGCCACAGACGTGATGATTGCG
GGCAAGGTGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCGCCCGCCCTGCGTTTGTCCCCAGCCCAAGGCCGGCCCCCTTCGCTCGTGTCCATC
ACTACGTGTGGAAGCGCCGCCAGCATGTCGGAGAAGCTGCCTTACAAAGTCGCTGACATC
AGCCTGGCCGCCTGGGGACGCAAGGCCCTGGACCTCGCAGAGAATGAGATGCCAGGCCTG
ATGCGCATGCGGGAGATGTATTCCGCCTCCAAGCCACTGAAAGGCGCCCGTATTGCCGGC
TGCCTGCACATGACCGTGGAGACAGCTGTACTCATTGAGACCCTCGTCGCCCTGGGTGCT
GAGGTGCGGTGGTCCAGCTGCAACATTTTCTCTACTCAGGACCATGCAGCAGCTGCCATT
GCCAAGGCTGGCATTCCAGTGTATGCCTGGAAGGGTGAAACGGACGAGGAGTATCTGTGG
TGCATTGAGCAGACACTGTACTTCAAGGATGGGCCCCTCAACATGATCCTGGATGATGGT
GGTGACCTTACCAACCTCGTCCACACCAAGTACCCAGAGCTCCTGTCAGGCATCCGAGGC
ATCTCTGAAGAGACCACAACGGGAGTCCACAACCTGTACAAGATGAAGGCCAACGGGATC
CTGAAGGTGCCTGCCATCAACGTTAATGACTCTGTCACCAAGAGCAAGTTTGACAACCTC
TATGGCTGCCGGGAGTCCCTCATAGATGGCATCAAGCGGGCCACAGACGTGATGATTGCG
GGCAAGGTGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10241525|emb|CAC09529.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10241525|emb|CAC09529.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               251-355, - strand, RNAz p=0.565255

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-355, - strand, RNAz p=0.565255

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               54-355, gnl|bosTau2|chr11 (87149767-87150082)
               

               
               54-355, gnl|Hg17|chr11 (85245741-85246043)
               

               
               54-355, gnl|Mm7|chr16 (45933963-45933662)
               


               
               387-731, gnl|bosTau2|chr11 (87150080-87150403)
               

               
               387-731, gnl|Hg17|chr11 (85246041-85246433)
               

               
               387-731, gnl|Mm7|chr16 (45933664-45933273)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-355, gnl|bosTau2|chr11 (87149767-87150082)
               

               
               54-355, gnl|Hg17|chr11 (85245741-85246043)
               

               
               54-355, gnl|Mm7|chr16 (45933963-45933662)
               


               
               387-731, gnl|bosTau2|chr11 (87150080-87150403)
               

               
               387-731, gnl|Hg17|chr11 (85246041-85246433)
               

               
               387-731, gnl|Mm7|chr16 (45933664-45933273)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	54-355, gnl\|bosTau2\|chr11 (87149767-87150082)
	54-355, gnl\|Hg17\|chr11 (85245741-85246043)
	54-355, gnl\|Mm7\|chr16 (45933963-45933662)

	387-731, gnl\|bosTau2\|chr11 (87150080-87150403)
	387-731, gnl\|Hg17\|chr11 (85246041-85246433)
	387-731, gnl\|Mm7\|chr16 (45933664-45933273)