Ss1.1-Spl1-SPL01A090093.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGACCAGAAGGTCATCAAGCTGGTCAAGAAGTACAGCACGAAGCAGTGGACGCTGATGG CCAAGCACCTGAAGGGCTGGCTGGGGAAGCAGTGCCGTGAGCGCTGGCACAACCACCTCA TCTGCGAGGCCCACAAGGTGCTGGGCAACCGCTGGGCTGAGATCGCCAAGATGCTGCCAG GGAGGACAGAGAATGCTGTGAAGAATCCCTGGAACTCCACCATCAAGAGGAAGGTAGACA CGGGAGGCTTCCTGAGCCAGTCCAGAGACTGCAAACCCCCCATGTACTTGCTACTGGAGC TGGAGAACAAGGACCACCAGAGTGCACCCTCCTTGGAAGGCCAGGGGAATCTCATGACAA GCTGGCCCCCAGAGTTCCCTGCCCTAAAGGAGGAGGAGAGCAGTGAGGAGGAGGCCACAT CAGCTGCCCCCTCCCAGGAGCAGGAGCCTGTCTCCACTGAGCCGGACAGGGTGCAGACAC CAGAGCCCCAGGAGGACTTGTCCAAGCACGAGGACCAAAATGACTCCCTGCTGGAAACCA GCCTGCTCTACAAGTGGGGGGGTGGAGGCCACAAACATCCTCATCCCTGCTGTGGGGTCC GGCCTTTCCAAAGCCCTGGACTTGGTCAAGTTAGTAATGTTGGTTACAGTGCTTCACAGT GGCGGGAGGGGGCACCCCCAGCAGGGAGTGCTTCTCTCCTAGACAGCACTCTTTGTCCAC TCATTGTCTCAATGACATGGCCAAGCTGATGCCAAGTGCCCAGCCCAGCGCCAGGGCCTG GTGACACCAGGATAGTGGCCATGCAGTCCATGCCCTTGGGGCGCTCCTGACACTCCTGTG CAGCACTGGATGGGTATGGGAAAGAGCATTTGAGGCCATAATACAGCATGAGAGGGCGGG GTGTTTATGGCAGCACAAGTGTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGACCAGAAGGTCATCAAGCTGGTCAAGAAGTACAGCACGAAGCAGTGGACGCTGATGG CCAAGCACCTGAAGGGCTGGCTGGGGAAGCAGTGCCGTGAGCGCTGGCACAACCACCTCA TCTGCGAGGCCCACAAGGTGCTGGGCAACCGCTGGGCTGAGATCGCCAAGATGCTGCCAG GGAGGACAGAGAATGCTGTGAAGAATCCCTGGAACTCCACCATCAAGAGGAAGGTAGACA CGGGAGGCTTCCTGAGCCAGTCCAGAGACTGCAAACCCCCCATGTACTTGCTACTGGAGC TGGAGAACAAGGACCACCAGAGTGCACCCTCCTTGGAAGGCCAGGGGAATCTCATGACAA GCTGGCCCCCAGAGTTCCCTGCCCTAAAGGAGGAGGAGAGCAGTGAGGAGGAGGCCACAT CAGCTGCCCCCTCCCAGGAGCAGGAGCCTGTCTCCACTGAGCCGGACAGGGTGCAGACAC CAGAGCCCCAGGAGGACTTGTCCAAGCACGAGGACCAAAATGACTCCCTGCTGGAAACCA GCCTGCTCTACAAGTGGGGGGGTGGAGGCCACAAACATCCTCATCCCTGCTGTGGGGTCC GGCCTTTCCAAAGCCCTGGACTTGGTCAAGTTAGTAATGTTGGTTACAGTGCTTCACAGT GGCGGGAGGGGGCACCCCCAGCAGGGAGTGCTTCTCTCCTAGACAGCACTCTTTGTCCAC TCATTGTCTCAATGACATGGCCAAGCTGATGCCAAGTGCCCAGCCCAGCGCCAGGGCCTG GTGACACCAGGATAGTGGCCATGCAGTCCATGCCCTTGGGGCGCTCCTGACACTCCTGTG CAGCACTGGATGGGTATGGGAAAGAGCATTTGAGGCCATAATACAGCATGAGAGGGCGGG GTGTTTATGGCAGCACAAGTGTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 579-773, - strand, RNAz p=0.986589 | |
| 633-782, - strand, RNAz p=0.768987 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 579-773, - strand, RNAz p=0.986589 | |
| 633-782, - strand, RNAz p=0.768987 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 4-129, gnl|bosTau2|chr13 (52680486-52680361) | |
| 4-129, gnl|canFam2|chr24 (34325801-34326038) | |
| 4-129, gnl|danRer3|chr11 (525297-525523) | |
| 4-129, gnl|dasNov1|scaffold_13040 (33406-33172) | |
| 4-129, gnl|echTel1|scaffold_279353 (119453-119691) | |
| 4-129, gnl|fr1|chrUn (163453233-163453460) | |
| 4-129, gnl|galGal2|chr20 (3448043-3447805) | |
| 4-129, gnl|hg17|chr20 (41748894-41749132) | |
| 4-129, gnl|Hg17|chr20 (41748898-41749023) | |
| 4-129, gnl|loxAfr1|scaffold_8194 (23731-23493) | |
| 4-129, gnl|mm7|chr2 (162805160-162805396) | |
| 4-129, gnl|Mm7|chr2 (162805162-162805287) | |
| 4-129, gnl|monDom2|scaffold_6 (9806515-9806280) | |
| 4-129, gnl|oryCun1|scaffold_97123 (928-1162) | |
| 4-129, gnl|panTro1|chr21 (44189270-44189508) | |
| 4-129, gnl|rheMac2|chr10 (20763850-20763612) | |
| 4-129, gnl|rn3|chr3 (153841453-153841690) | |
| 4-129, gnl|tetNig1|chrUn_random (104215529-104215300) | |
| 4-129, gnl|xenTro1|scaffold_35 (173516-173753) | |
| 341-853, gnl|bosTau2|chr13 (52673721-52673218) | |
| 341-853, gnl|canFam2|chr24 (34336164-34336510) | |
| 341-853, gnl|dasNov1|scaffold_124030 (1477-1148) | |
| 341-853, gnl|echTel1|scaffold_279353 (121956-122277) | |
| 341-853, gnl|galGal2|chr20 (3446807-3446492) | |
| 341-853, gnl|hg17|chr20 (41761783-41762128) | |
| 341-853, gnl|Hg17|chr20 (41761806-41762351) | |
| 341-853, gnl|loxAfr1|scaffold_53614 (5608-5260) | |
| 341-853, gnl|mm7|chr2 (162813490-162813824) | |
| 341-853, gnl|monDom2|scaffold_6 (9792975-9792631) | |
| 341-853, gnl|oryCun1|scaffold_97123 (9613-9938) | |
| 341-853, gnl|panTro1|chr21 (44202183-44202528) | |
| 341-853, gnl|rheMac2|chr10 (20749447-20749102) | |
| 341-853, gnl|rn3|chr3 (153849119-153849457) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-129, gnl|bosTau2|chr13 (52680486-52680361) | |
| 4-129, gnl|canFam2|chr24 (34325801-34326038) | |
| 4-129, gnl|danRer3|chr11 (525297-525523) | |
| 4-129, gnl|dasNov1|scaffold_13040 (33406-33172) | |
| 4-129, gnl|echTel1|scaffold_279353 (119453-119691) | |
| 4-129, gnl|fr1|chrUn (163453233-163453460) | |
| 4-129, gnl|galGal2|chr20 (3448043-3447805) | |
| 4-129, gnl|hg17|chr20 (41748894-41749132) | |
| 4-129, gnl|Hg17|chr20 (41748898-41749023) | |
| 4-129, gnl|loxAfr1|scaffold_8194 (23731-23493) | |
| 4-129, gnl|mm7|chr2 (162805160-162805396) | |
| 4-129, gnl|Mm7|chr2 (162805162-162805287) | |
| 4-129, gnl|monDom2|scaffold_6 (9806515-9806280) | |
| 4-129, gnl|oryCun1|scaffold_97123 (928-1162) | |
| 4-129, gnl|panTro1|chr21 (44189270-44189508) | |
| 4-129, gnl|rheMac2|chr10 (20763850-20763612) | |
| 4-129, gnl|rn3|chr3 (153841453-153841690) | |
| 4-129, gnl|tetNig1|chrUn_random (104215529-104215300) | |
| 4-129, gnl|xenTro1|scaffold_35 (173516-173753) | |
| 341-853, gnl|bosTau2|chr13 (52673721-52673218) | |
| 341-853, gnl|canFam2|chr24 (34336164-34336510) | |
| 341-853, gnl|dasNov1|scaffold_124030 (1477-1148) | |
| 341-853, gnl|echTel1|scaffold_279353 (121956-122277) | |
| 341-853, gnl|galGal2|chr20 (3446807-3446492) | |
| 341-853, gnl|hg17|chr20 (41761783-41762128) | |
| 341-853, gnl|Hg17|chr20 (41761806-41762351) | |
| 341-853, gnl|loxAfr1|scaffold_53614 (5608-5260) | |
| 341-853, gnl|mm7|chr2 (162813490-162813824) | |
| 341-853, gnl|monDom2|scaffold_6 (9792975-9792631) | |
| 341-853, gnl|oryCun1|scaffold_97123 (9613-9938) | |
| 341-853, gnl|panTro1|chr21 (44202183-44202528) | |
| 341-853, gnl|rheMac2|chr10 (20749447-20749102) | |
| 341-853, gnl|rn3|chr3 (153849119-153849457) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.136314) |