Non-Coding RNA Search

Ss1.1-Spl1-SPL01A100081.5

Sequence:


               
               GCGGCGGCGTGTCCGGAGCAGTCTGCGGCGGCGAGGGACCGGAACCCAGGTCCAGGACTG
AGCTCCCCGGCACCATGAACCCTACCATTGGCATCGCTCTCTTGCTAACAGTCTTGCAGG
TGGCCCGTGGACAGAAGGTGACCAGCCTGACAGCCTGCCTGGTGGACCAGAGCCTTCGTC
TAGACTGCCGCCATGAGAATACCACCAACCTGCCCATTCAGTACGAGTTCAGCCTGACCC
GCGAGAAAAAGAAGCACGTGCTCTTGGGCACTGTGGGGGTCCCTGAGCACTCCTACCGCT
CTCGAACCAACTTCTCCAGCAAGTACGACATCAAGGTCCTCTACTTATCAGGCTTCACTA
CCAAAGATGAGGGGATCTACGCATGCGAACTCCACCTCTCTGGCCAGACGCCCAGCATCT
CCAGCAAGAATATCTCTGTGTTCAGAGACAAACTGGTCAAGTGTGGGGGCATAAGCCTGC
TAATCCAGAACACCTCGTGGCTGCTGCTGCTTCTGCTCTCGCTGCCCCTCCTGCAGGCCA
TGGATTTCATCTCCCTGTGACTGATGGGGCCCGTGGAAGATACACGAAGCCACAAGGCCC
AGTGCAGAGACCCTACTTCTCTGAGTCAGCTGACCCCCTCCCCCCAACCCCTCACACACC
TTGGGGAGAACTGGGGACCCCACCGCTCCTAAGGACTCCCAGTGCTGCATGCCATTATCC
CCCTCTCCCCCACCGCCACCTCGTACCCTCTCCGCACGCCACTGGCTATTCGTCCTCTTT
GTTCCAGAGCTGCTTTCTGTCTGGTTTATTTAGGGCTTGTCCTTCCTTTTCTTTGGAGTT
TGTGAAAAGGGAAGCCAGGGTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCGGCGTGTCCGGAGCAGTCTGCGGCGGCGAGGGACCGGAACCCAGGTCCAGGACTG
AGCTCCCCGGCACCATGAACCCTACCATTGGCATCGCTCTCTTGCTAACAGTCTTGCAGG
TGGCCCGTGGACAGAAGGTGACCAGCCTGACAGCCTGCCTGGTGGACCAGAGCCTTCGTC
TAGACTGCCGCCATGAGAATACCACCAACCTGCCCATTCAGTACGAGTTCAGCCTGACCC
GCGAGAAAAAGAAGCACGTGCTCTTGGGCACTGTGGGGGTCCCTGAGCACTCCTACCGCT
CTCGAACCAACTTCTCCAGCAAGTACGACATCAAGGTCCTCTACTTATCAGGCTTCACTA
CCAAAGATGAGGGGATCTACGCATGCGAACTCCACCTCTCTGGCCAGACGCCCAGCATCT
CCAGCAAGAATATCTCTGTGTTCAGAGACAAACTGGTCAAGTGTGGGGGCATAAGCCTGC
TAATCCAGAACACCTCGTGGCTGCTGCTGCTTCTGCTCTCGCTGCCCCTCCTGCAGGCCA
TGGATTTCATCTCCCTGTGACTGATGGGGCCCGTGGAAGATACACGAAGCCACAAGGCCC
AGTGCAGAGACCCTACTTCTCTGAGTCAGCTGACCCCCTCCCCCCAACCCCTCACACACC
TTGGGGAGAACTGGGGACCCCACCGCTCCTAAGGACTCCCAGTGCTGCATGCCATTATCC
CCCTCTCCCCCACCGCCACCTCGTACCCTCTCCGCACGCCACTGGCTATTCGTCCTCTTT
GTTCCAGAGCTGCTTTCTGTCTGGTTTATTTAGGGCTTGTCCTTCCTTTTCTTTGGAGTT
TGTGAAAAGGGAAGCCAGGGTTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13195770|gb|AAB26353.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13195770|gb|AAB26353.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               602-743, - strand, RNAz p=0.988936
               

               
               756-862, + strand, RNAz p=0.934081

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               602-743, - strand, RNAz p=0.988936
               

               
               756-862, + strand, RNAz p=0.934081

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_033209, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_033209, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               443-862, gnl|bosTau2|chr15 (14486686-14486266)
               

               
               443-862, gnl|Hg17|chr11 (118795445-118795025)
               

               
               443-862, gnl|Mm7|chr9 (43981679-43982082)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               443-862, gnl|bosTau2|chr15 (14486686-14486266)
               

               
               443-862, gnl|Hg17|chr11 (118795445-118795025)
               

               
               443-862, gnl|Mm7|chr9 (43981679-43982082)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               ecc (0.115035)

	602-743, - strand, RNAz p=0.988936
	756-862, + strand, RNAz p=0.934081

	443-862, gnl\|bosTau2\|chr15 (14486686-14486266)
	443-862, gnl\|Hg17\|chr11 (118795445-118795025)
	443-862, gnl\|Mm7\|chr9 (43981679-43982082)