Non-Coding RNA Search

Ss1.1-Spl1-SPL01A100098.5

Sequence:


               
               CGCCGGTGGTGGGGCTGGAGTTTGTGTTCGGGCTCCTGGGTAATGGCCTTGCTCTGTGGA
TTTTCTGCTTCCACCTCAAGTCTTGGAAATCCAGCCGGATTTTCCTGTTCAACCTGGCCG
TGGCTGACTTTCTCCTGATCATCTGCCTGCCATTCCTGACGGACAACTATGTGAGGAAGT
GGGACTGGAGATTTGGGGACATCCCCTGCCGAATAATGCTCTTCATGTTGGCCATGAACC
GCCAGGGCAGCATCATCTTCCTCACAGTGGTGGCCGTGGACCGGTACTTCCGGGTGGTCC
ATCCCCACCACGCTCTGAACAAGATCTCCAATCGCACAGCAGCCATCATCTCCTGCCTCC
TGTGGGGCCTCACAATTGGCCTGACGGTCCACCTCCTGAACAAAACGATGTTAATCAAGA
AGCACGACTCATATTTGTGCAGTAGCTTCAGCATCTGCAATACCTTCCGCTGGCATGATG
CCATGTTCCTCCTGGAGTTCTTCCTGCCCCTGGGCATCATCCTGTTCTGCTCGGCCAGGA
TTGTCTGGAGCCTGCGGCAGCGACAAATGGACCGGCATGTCAAGATCAAGAGGGCCATCA
ACTTCGTCATGGTGGTGGCCATCGTCTTCATCATCTGCTTCCTGCCCAGCGTGGCCGTGC
GCATCCGCATTTTCTGGCTTCTCCGCACTGCTGGAACGGAGAACTGTGACATCTACCGCT
CGGTGGACCTGGCGTTTTATATCACCCTCAGCTTCACCTACATGAACAGTATGCTGGACC
CTTTGGTGTATTACTTCTCCAGCCCATCTTTCCCCAACTTCTTATCCACCTTGATCAACC
GCTGCCTGCGGAGGAAGGTGCTGGAGGAGTCCAACAATAACCGCAGCACAAGCCTCGAGC
TCACTGGGGAACCCAGCACCCACAGGAACGTTCCTGATACTTCAGTGGCCGATCCCAGGG
AGCCGTTGAGCCCCTCTGACCTGACTCCAGCCTCTCATTAAAACAACCAAGCCAAGAAGG
GAGATGGTCACCAAGGACCAGGATCTCTGGAGAAATGGTTTGGCTGGTGCCCAGACTAAC
ATCATTAGCCTTGGCCCACGATTTCCCAGAACTTCCAGGTTCAAGAGAATCAGATTTAGG
GAATTGGTGTGGCAGCGTGGGCTGCCTGGTTGCCGAGTGTCTCCACAGGCATCTTGTGGG
GAATGGAGGATGAAGTTCCTAGGCGTCTGAAGCTTCTGATCAATCTCGGACCCTTGCAGA
ACTGAAGATGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGGTGGTGGGGCTGGAGTTTGTGTTCGGGCTCCTGGGTAATGGCCTTGCTCTGTGGA
TTTTCTGCTTCCACCTCAAGTCTTGGAAATCCAGCCGGATTTTCCTGTTCAACCTGGCCG
TGGCTGACTTTCTCCTGATCATCTGCCTGCCATTCCTGACGGACAACTATGTGAGGAAGT
GGGACTGGAGATTTGGGGACATCCCCTGCCGAATAATGCTCTTCATGTTGGCCATGAACC
GCCAGGGCAGCATCATCTTCCTCACAGTGGTGGCCGTGGACCGGTACTTCCGGGTGGTCC
ATCCCCACCACGCTCTGAACAAGATCTCCAATCGCACAGCAGCCATCATCTCCTGCCTCC
TGTGGGGCCTCACAATTGGCCTGACGGTCCACCTCCTGAACAAAACGATGTTAATCAAGA
AGCACGACTCATATTTGTGCAGTAGCTTCAGCATCTGCAATACCTTCCGCTGGCATGATG
CCATGTTCCTCCTGGAGTTCTTCCTGCCCCTGGGCATCATCCTGTTCTGCTCGGCCAGGA
TTGTCTGGAGCCTGCGGCAGCGACAAATGGACCGGCATGTCAAGATCAAGAGGGCCATCA
ACTTCGTCATGGTGGTGGCCATCGTCTTCATCATCTGCTTCCTGCCCAGCGTGGCCGTGC
GCATCCGCATTTTCTGGCTTCTCCGCACTGCTGGAACGGAGAACTGTGACATCTACCGCT
CGGTGGACCTGGCGTTTTATATCACCCTCAGCTTCACCTACATGAACAGTATGCTGGACC
CTTTGGTGTATTACTTCTCCAGCCCATCTTTCCCCAACTTCTTATCCACCTTGATCAACC
GCTGCCTGCGGAGGAAGGTGCTGGAGGAGTCCAACAATAACCGCAGCACAAGCCTCGAGC
TCACTGGGGAACCCAGCACCCACAGGAACGTTCCTGATACTTCAGTGGCCGATCCCAGGG
AGCCGTTGAGCCCCTCTGACCTGACTCCAGCCTCTCATTAAAACAACCAAGCCAAGAAGG
GAGATGGTCACCAAGGACCAGGATCTCTGGAGAAATGGTTTGGCTGGTGCCCAGACTAAC
ATCATTAGCCTTGGCCCACGATTTCCCAGAACTTCCAGGTTCAAGAGAATCAGATTTAGG
GAATTGGTGTGGCAGCGTGGGCTGCCTGGTTGCCGAGTGTCTCCACAGGCATCTTGTGGG
GAATGGAGGATGAAGTTCCTAGGCGTCTGAAGCTTCTGATCAATCTCGGACCCTTGCAGA
ACTGAAGATGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57105810|ref|XP_543378.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57105810|ref|XP_543378.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-805, gnl|bosTau2|chr11 (22084266-22083474)
               

               
               1-805, gnl|Hg17|chr2 (42902684-42901892)
               

               
               1-805, gnl|Mm7|chr5 (123111200-123110387)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-805, gnl|bosTau2|chr11 (22084266-22083474)
               

               
               1-805, gnl|Hg17|chr2 (42902684-42901892)
               

               
               1-805, gnl|Mm7|chr5 (123111200-123110387)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-805, gnl\|bosTau2\|chr11 (22084266-22083474)
	1-805, gnl\|Hg17\|chr2 (42902684-42901892)
	1-805, gnl\|Mm7\|chr5 (123111200-123110387)