Ss1.1-Spl1-SPL01A100105.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAACCTCGAGTTTGGGGCAGCGACTGCAGCTGAAAGTAGGAGCGTGTTGGTATTAACGTA GCTTACCGCGCGACTTCAGACACAGGAAACCTCTCCGCCACAAACTTTGGCGAGAGGCTT GGTAGTCGAGGCTGCTGAAGAAAGTAGAGGGAGGTAAAGAGGGAGCGACGCTGAAGGAGA CGTCAGAAAAGCGCACCGGAAGCGGTCCGAGAATGAAGAGTGTGATCTACAATGCCTTTT CTCAGAAAGAGGCGAAAGAGTTCGATGTTCAGCACACGGGCGCCCAGCGGGCCGAGGCCT TCGTGAGGGCCTTCCTGAAACGGAGCATGCCCCACATGAGCCAGCAAGTCCGGGAGGACC TCCTGCAACGCAAGGCCGTCGTTCTGGAGTACTTCACTCACCGGAAGCAAAAGGAAAAGA AAAAGAAATCCAGAGGCCTCTCTGCCAAGCAGAGGAGGGAGCTGCGGCTCTTTGACATTA AACCAGAACAGCAGAGGTACAGTCTTTTTCTCCCTCTGCACGAACTCTGGAAACAGTACA TTCGGGATCTGTGCAATGGACTCAAACCAGACACGCAGCCGCAGATGATTCAGGCTAAAC TTCTGAAGGCAGATCTTCACGGCGCTATTGTTTCAGTTACAAAATCCAAATGCCCCTCCT ATGTGGGGGTTACAGGCATCCTTCTACAGGAAACAAAGCACGTTTTCAAAATTATCACCA AAGAAGACCGCCTGAAAGTCATCCCCAAGCTGAACTGTGTGTTCACTGTGGAGATCGACG GCTTTATTTCCTACATTTATGGGAGCAAATTCCAGCTGCGGTCGAGCGAGCGGTCTGCGA AGAAGTTCAAAGCCAAGGGAACAATTGACCTGTGAGCTCTTGCTGCCTAAGGGGATTGTT TATGGCAGCTGAAAACTGGAAACCCTAAATACCCTCCTTTCTGGGAAGAGGTGGTCAGGC CAGTTCTGGTTCTAGACCACCTCAGCCGGTTTCAGTCAGAGCTAAGGACATTTCATCATC TGGCCAGAAGTATAGTGTCCTGAGCGCCGAAGGCAGGGACAAGCGGTGTGGTCTTTTGGG GTGCTTTGTAGGTCTTTCTAGGTGCTCTTGTTTTTGTATTACGCCCGTGGGGAGAGGAGA TTGGCAGAACACACCAGGATTGATAACAGGTTGACTTGAATAGTGGGACTGTTTGGTTTT CATTGCTTTTTCCTACTTTTCTGTGTTTTCGGTATGTTCTGTGATGAATCGCTTGTTTAC CTGATAACAAACATGCACGTAGGCATGGACAGGAGCGCCTCCTGCAGCACAGCCAGGAGG GAAGGGGAGGCCCGAGGCTGCCCCTGGATTGCGCCTTTACTTTTTGCTCTGTGGAAGCCG CCCTCAAGCATCGCCTCTCCCAAGTTCACTGGTGCCCTGGCATCTTTGGCACATCACTTT AAACCATGCCCACTATCAAGGTCTTGGATCTGAGATTTACTTTGCTAATTCAAGAAAACT GAAGAGGAATGAGTGGTGAAGTTGCTGAATGACTCAGGAGCCAGTCGTTCGGGGGTCGGA ACTGGGCTGGGCAGAGGGTCGGGCCGAGGTGTGCTTGTTAATGCTTGTTCCCCTAGAGGG CGCTTCAGCCTGCAGAGCGTCCTCATTCCTGAGTCTCTTAGGCTCCAGAGGAAGGTAGGC TGAAGGGGAAATAAGACTGCAGCTCTTCCCAAGGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAACCTCGAGTTTGGGGCAGCGACTGCAGCTGAAAGTAGGAGCGTGTTGGTATTAACGTA GCTTACCGCGCGACTTCAGACACAGGAAACCTCTCCGCCACAAACTTTGGCGAGAGGCTT GGTAGTCGAGGCTGCTGAAGAAAGTAGAGGGAGGTAAAGAGGGAGCGACGCTGAAGGAGA CGTCAGAAAAGCGCACCGGAAGCGGTCCGAGAATGAAGAGTGTGATCTACAATGCCTTTT CTCAGAAAGAGGCGAAAGAGTTCGATGTTCAGCACACGGGCGCCCAGCGGGCCGAGGCCT TCGTGAGGGCCTTCCTGAAACGGAGCATGCCCCACATGAGCCAGCAAGTCCGGGAGGACC TCCTGCAACGCAAGGCCGTCGTTCTGGAGTACTTCACTCACCGGAAGCAAAAGGAAAAGA AAAAGAAATCCAGAGGCCTCTCTGCCAAGCAGAGGAGGGAGCTGCGGCTCTTTGACATTA AACCAGAACAGCAGAGGTACAGTCTTTTTCTCCCTCTGCACGAACTCTGGAAACAGTACA TTCGGGATCTGTGCAATGGACTCAAACCAGACACGCAGCCGCAGATGATTCAGGCTAAAC TTCTGAAGGCAGATCTTCACGGCGCTATTGTTTCAGTTACAAAATCCAAATGCCCCTCCT ATGTGGGGGTTACAGGCATCCTTCTACAGGAAACAAAGCACGTTTTCAAAATTATCACCA AAGAAGACCGCCTGAAAGTCATCCCCAAGCTGAACTGTGTGTTCACTGTGGAGATCGACG GCTTTATTTCCTACATTTATGGGAGCAAATTCCAGCTGCGGTCGAGCGAGCGGTCTGCGA AGAAGTTCAAAGCCAAGGGAACAATTGACCTGTGAGCTCTTGCTGCCTAAGGGGATTGTT TATGGCAGCTGAAAACTGGAAACCCTAAATACCCTCCTTTCTGGGAAGAGGTGGTCAGGC CAGTTCTGGTTCTAGACCACCTCAGCCGGTTTCAGTCAGAGCTAAGGACATTTCATCATC TGGCCAGAAGTATAGTGTCCTGAGCGCCGAAGGCAGGGACAAGCGGTGTGGTCTTTTGGG GTGCTTTGTAGGTCTTTCTAGGTGCTCTTGTTTTTGTATTACGCCCGTGGGGAGAGGAGA TTGGCAGAACACACCAGGATTGATAACAGGTTGACTTGAATAGTGGGACTGTTTGGTTTT CATTGCTTTTTCCTACTTTTCTGTGTTTTCGGTATGTTCTGTGATGAATCGCTTGTTTAC CTGATAACAAACATGCACGTAGGCATGGACAGGAGCGCCTCCTGCAGCACAGCCAGGAGG GAAGGGGAGGCCCGAGGCTGCCCCTGGATTGCGCCTTTACTTTTTGCTCTGTGGAAGCCG CCCTCAAGCATCGCCTCTCCCAAGTTCACTGGTGCCCTGGCATCTTTGGCACATCACTTT AAACCATGCCCACTATCAAGGTCTTGGATCTGAGATTTACTTTGCTAATTCAAGAAAACT GAAGAGGAATGAGTGGTGAAGTTGCTGAATGACTCAGGAGCCAGTCGTTCGGGGGTCGGA ACTGGGCTGGGCAGAGGGTCGGGCCGAGGTGTGCTTGTTAATGCTTGTTCCCCTAGAGGG CGCTTCAGCCTGCAGAGCGTCCTCATTCCTGAGTCTCTTAGGCTCCAGAGGAAGGTAGGC TGAAGGGGAAATAAGACTGCAGCTCTTCCCAAGGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 101-221, + strand, RNAz p=0.820224 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 101-221, + strand, RNAz p=0.820224 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 22-221, gnl|bosTau2|chr18 (33478622-33478417) | |
| 22-221, gnl|Mm7|chr7 (35165800-35165598) | |
| 270-499, gnl|bosTau2|chr18 (33475007-33474778) | |
| 270-499, gnl|canFam2|chr1 (124751351-124751120) | |
| 270-499, gnl|danRer3|chrUn (106060553-106060765) | |
| 270-499, gnl|echTel1|scaffold_319153 (75-311) | |
| 270-499, gnl|galGal2|chr11 (8506068-8506299) | |
| 270-499, gnl|hg17|chr19 (34793152-34793383) | |
| 270-499, gnl|Hg17|chr19 (34793153-34793382) | |
| 270-499, gnl|loxAfr1|scaffold_72416 (5331-5100) | |
| 270-499, gnl|mm7|chr7 (35162054-35161820) | |
| 270-499, gnl|Mm7|chr7 (35162051-35161819) | |
| 270-499, gnl|monDom2|scaffold_35 (8192782-8192551) | |
| 270-499, gnl|oryCun1|scaffold_173997 (85139-85370) | |
| 270-499, gnl|panTro1|chr20_random (12859728-12859497) | |
| 270-499, gnl|rheMac2|chr19 (36047336-36047570) | |
| 270-499, gnl|rn3|chr1 (90831954-90831720) | |
| 270-499, gnl|tetNig1|chrUn_random (32951304-32951540) | |
| 270-499, gnl|xenTro1|scaffold_391 (574895-574667) | |
| 737-1089, gnl|bosTau2|chr18 (33469705-33469357) | |
| 737-1089, gnl|Hg17|chr19 (34797989-34798346) | |
| 737-1089, gnl|Mm7|chr7 (35157764-35157441) | |
| 1092-1505, gnl|bosTau2|chr18 (33469376-33468965) | |
| 1092-1505, gnl|canFam2|chr1 (124746856-124746603) | |
| 1092-1505, gnl|dasNov1|scaffold_2098 (13795-13637) | |
| 1092-1505, gnl|echTel1|scaffold_319153 (4130-4325) | |
| 1092-1505, gnl|hg17|chr19 (34798310-34798587) | |
| 1092-1505, gnl|Hg17|chr19 (34798327-34798677) | |
| 1092-1505, gnl|mm7|chr7 (35157477-35157222) | |
| 1092-1505, gnl|oryCun1|scaffold_173997 (90963-91208) | |
| 1092-1505, gnl|panTro1|chr20_random (12854567-12854292) | |
| 1092-1505, gnl|rheMac2|chr19 (36052542-36052818) | |
| 1092-1505, gnl|rn3|chr1 (90827409-90827156) | |
| 1607-1716, gnl|bosTau2|chr18 (33468962-33468852) | |
| 1607-1716, gnl|Hg17|chr19 (34798680-34798894) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-221, gnl|bosTau2|chr18 (33478622-33478417) | |
| 22-221, gnl|Mm7|chr7 (35165800-35165598) | |
| 270-499, gnl|bosTau2|chr18 (33475007-33474778) | |
| 270-499, gnl|canFam2|chr1 (124751351-124751120) | |
| 270-499, gnl|danRer3|chrUn (106060553-106060765) | |
| 270-499, gnl|echTel1|scaffold_319153 (75-311) | |
| 270-499, gnl|galGal2|chr11 (8506068-8506299) | |
| 270-499, gnl|hg17|chr19 (34793152-34793383) | |
| 270-499, gnl|Hg17|chr19 (34793153-34793382) | |
| 270-499, gnl|loxAfr1|scaffold_72416 (5331-5100) | |
| 270-499, gnl|mm7|chr7 (35162054-35161820) | |
| 270-499, gnl|Mm7|chr7 (35162051-35161819) | |
| 270-499, gnl|monDom2|scaffold_35 (8192782-8192551) | |
| 270-499, gnl|oryCun1|scaffold_173997 (85139-85370) | |
| 270-499, gnl|panTro1|chr20_random (12859728-12859497) | |
| 270-499, gnl|rheMac2|chr19 (36047336-36047570) | |
| 270-499, gnl|rn3|chr1 (90831954-90831720) | |
| 270-499, gnl|tetNig1|chrUn_random (32951304-32951540) | |
| 270-499, gnl|xenTro1|scaffold_391 (574895-574667) | |
| 737-1089, gnl|bosTau2|chr18 (33469705-33469357) | |
| 737-1089, gnl|Hg17|chr19 (34797989-34798346) | |
| 737-1089, gnl|Mm7|chr7 (35157764-35157441) | |
| 1092-1505, gnl|bosTau2|chr18 (33469376-33468965) | |
| 1092-1505, gnl|canFam2|chr1 (124746856-124746603) | |
| 1092-1505, gnl|dasNov1|scaffold_2098 (13795-13637) | |
| 1092-1505, gnl|echTel1|scaffold_319153 (4130-4325) | |
| 1092-1505, gnl|hg17|chr19 (34798310-34798587) | |
| 1092-1505, gnl|Hg17|chr19 (34798327-34798677) | |
| 1092-1505, gnl|mm7|chr7 (35157477-35157222) | |
| 1092-1505, gnl|oryCun1|scaffold_173997 (90963-91208) | |
| 1092-1505, gnl|panTro1|chr20_random (12854567-12854292) | |
| 1092-1505, gnl|rheMac2|chr19 (36052542-36052818) | |
| 1092-1505, gnl|rn3|chr1 (90827409-90827156) | |
| 1607-1716, gnl|bosTau2|chr18 (33468962-33468852) | |
| 1607-1716, gnl|Hg17|chr19 (34798680-34798894) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| eru (0.240096) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| bla (0.124347) | |
| eep (0.122564) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.240096) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| bla (0.124347) | |
| eep (0.122564) | |
| med (0.116252) | |
| cty (0.10408) |