Ss1.1-Spl1-SPL01A110086.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGTTCTATGTAACAACTGGTGAGTAAATACAAAGTTATACTTTATCAAAAAAAAAAAA CGGGCGCCGCGGGCTCTGAACCATGTACACTCGCAGTGCGGTGCTGGGCCCCATTTTTTT AGCCCCCGCTGCCTCCCGCCCTGACCGGGACCCCCCTGAGCGGCGCAGGGAGCTGGGCCC GCCGCAGGGCGCCGGGCAGGGTTTGGAGGCGGCTGCCGAGAGTCCTTCGCGGGAGAGCCT GGAGCACGAGCGCCCGAGGTTCACAGGCGCATATACCTTGATAACACCAACTGAAAAGCG AAGAAGCGAGCTGCAACGGATGGCTACGAAAGAGCTGGAGGACCTGGAGAGGTGGAAGGA GCAACAGAGGGCAAAGCCCATTCACCTGGAGCCCAGGCGGCTAGGTGGAAGCCAATCAGA GGCTGAAGTCAGGCAGAGACAACAACTCCAGCTGATACAATCTAAATACCAGAAAAAGCT AAAAAGAGAAGAACAGATAAGACTCAAGAAGGAAGCTGAAGAAGCTGAAATCCAAAAAAT GAAGGTCATTCAGAGAGAGAAGAGCAATAAACTAGAGGAGAAAAAACGACATCAAGAAGA GCTCAGAAGAGAAGCTTTTAGAGAGCATCGGCAATACAAAACTACTGAGTTCTTGAGAAG AATCAACACAGAGTTGCCACCCAGAAGTACCTGTCCAGAGGCTCTTGGTGACTCACAGTC TTCAGCTTGGGCCAGAAGCCGGGCATATATGGATTCTCGAAAGGAAGAAGAAAATCAAAA ATTGCAAAAGATGAAGGAAGTACAACATCAGAAGAGTGAATTACTGGAATTTAAACGACA GCAACAGGAGGAAGAAAGAATTAAAACCCACCAGGCTGAACGCAGAAGGGTAAATAATGC CTTCCTGGACCGACTCCAAGGCGAAAGTCAACCAGGTGGCCTCCAGCACTTTGGAGGCTA TGGGAATATGAATAGTGGTAACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGTTCTATGTAACAACTGGTGAGTAAATACAAAGTTATACTTTATCAAAAAAAAAAAA CGGGCGCCGCGGGCTCTGAACCATGTACACTCGCAGTGCGGTGCTGGGCCCCATTTTTTT AGCCCCCGCTGCCTCCCGCCCTGACCGGGACCCCCCTGAGCGGCGCAGGGAGCTGGGCCC GCCGCAGGGCGCCGGGCAGGGTTTGGAGGCGGCTGCCGAGAGTCCTTCGCGGGAGAGCCT GGAGCACGAGCGCCCGAGGTTCACAGGCGCATATACCTTGATAACACCAACTGAAAAGCG AAGAAGCGAGCTGCAACGGATGGCTACGAAAGAGCTGGAGGACCTGGAGAGGTGGAAGGA GCAACAGAGGGCAAAGCCCATTCACCTGGAGCCCAGGCGGCTAGGTGGAAGCCAATCAGA GGCTGAAGTCAGGCAGAGACAACAACTCCAGCTGATACAATCTAAATACCAGAAAAAGCT AAAAAGAGAAGAACAGATAAGACTCAAGAAGGAAGCTGAAGAAGCTGAAATCCAAAAAAT GAAGGTCATTCAGAGAGAGAAGAGCAATAAACTAGAGGAGAAAAAACGACATCAAGAAGA GCTCAGAAGAGAAGCTTTTAGAGAGCATCGGCAATACAAAACTACTGAGTTCTTGAGAAG AATCAACACAGAGTTGCCACCCAGAAGTACCTGTCCAGAGGCTCTTGGTGACTCACAGTC TTCAGCTTGGGCCAGAAGCCGGGCATATATGGATTCTCGAAAGGAAGAAGAAAATCAAAA ATTGCAAAAGATGAAGGAAGTACAACATCAGAAGAGTGAATTACTGGAATTTAAACGACA GCAACAGGAGGAAGAAAGAATTAAAACCCACCAGGCTGAACGCAGAAGGGTAAATAATGC CTTCCTGGACCGACTCCAAGGCGAAAGTCAACCAGGTGGCCTCCAGCACTTTGGAGGCTA TGGGAATATGAATAGTGGTAACAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 63-261, gnl|bosTau2|chr12 (5276030-5276229) | |
| 63-261, gnl|canFam2|chr22 (10804615-10804104) | |
| 63-261, gnl|dasNov1|scaffold_8803 (1394-1951) | |
| 63-261, gnl|echTel1|scaffold_302867 (8296-8848) | |
| 63-261, gnl|hg17|chr13 (42464001-42464597) | |
| 63-261, gnl|Hg17|chr13 (42464333-42464114) | |
| 63-261, gnl|loxAfr1|scaffold_11043 (43199-43809) | |
| 63-261, gnl|mm7|chr14 (72585134-72584529) | |
| 63-261, gnl|Mm7|chr14 (72584806-72585016) | |
| 63-261, gnl|oryCun1|scaffold_192880 (9031-8465) | |
| 63-261, gnl|panTro1|chr14 (42162531-42163130) | |
| 63-261, gnl|rheMac2|chr17 (21907802-21908393) | |
| 63-261, gnl|rn3|chr15 (59006044-59005456) | |
| 477-581, gnl|bosTau2|chr12 (5302035-5302137) | |
| 477-581, gnl|canFam2|chr22 (10830396-10830254) | |
| 477-581, gnl|dasNov1|scaffold_40164 (12469-12611) | |
| 477-581, gnl|echTel1|scaffold_216339 (6382-6241) | |
| 477-581, gnl|galGal2|chr1 (158865397-158865535) | |
| 477-581, gnl|hg17|chr13 (42435359-42435496) | |
| 477-581, gnl|Hg17|chr13 (42435476-42435378) | |
| 477-581, gnl|loxAfr1|scaffold_11043 (18306-18448) | |
| 477-581, gnl|mm7|chr14 (72612617-72612480) | |
| 477-581, gnl|Mm7|chr14 (72612498-72612601) | |
| 477-581, gnl|monDom2|scaffold_64 (4819973-4820088) | |
| 477-581, gnl|oryCun1|scaffold_192880 (43286-43147) | |
| 477-581, gnl|panTro1|chr14 (42135570-42135707) | |
| 477-581, gnl|rheMac2|chr17 (21880338-21880475) | |
| 477-581, gnl|rn3|chr15 (59035073-59034937) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 63-261, gnl|bosTau2|chr12 (5276030-5276229) | |
| 63-261, gnl|canFam2|chr22 (10804615-10804104) | |
| 63-261, gnl|dasNov1|scaffold_8803 (1394-1951) | |
| 63-261, gnl|echTel1|scaffold_302867 (8296-8848) | |
| 63-261, gnl|hg17|chr13 (42464001-42464597) | |
| 63-261, gnl|Hg17|chr13 (42464333-42464114) | |
| 63-261, gnl|loxAfr1|scaffold_11043 (43199-43809) | |
| 63-261, gnl|mm7|chr14 (72585134-72584529) | |
| 63-261, gnl|Mm7|chr14 (72584806-72585016) | |
| 63-261, gnl|oryCun1|scaffold_192880 (9031-8465) | |
| 63-261, gnl|panTro1|chr14 (42162531-42163130) | |
| 63-261, gnl|rheMac2|chr17 (21907802-21908393) | |
| 63-261, gnl|rn3|chr15 (59006044-59005456) | |
| 477-581, gnl|bosTau2|chr12 (5302035-5302137) | |
| 477-581, gnl|canFam2|chr22 (10830396-10830254) | |
| 477-581, gnl|dasNov1|scaffold_40164 (12469-12611) | |
| 477-581, gnl|echTel1|scaffold_216339 (6382-6241) | |
| 477-581, gnl|galGal2|chr1 (158865397-158865535) | |
| 477-581, gnl|hg17|chr13 (42435359-42435496) | |
| 477-581, gnl|Hg17|chr13 (42435476-42435378) | |
| 477-581, gnl|loxAfr1|scaffold_11043 (18306-18448) | |
| 477-581, gnl|mm7|chr14 (72612617-72612480) | |
| 477-581, gnl|Mm7|chr14 (72612498-72612601) | |
| 477-581, gnl|monDom2|scaffold_64 (4819973-4820088) | |
| 477-581, gnl|oryCun1|scaffold_192880 (43286-43147) | |
| 477-581, gnl|panTro1|chr14 (42135570-42135707) | |
| 477-581, gnl|rheMac2|chr17 (21880338-21880475) | |
| 477-581, gnl|rn3|chr15 (59035073-59034937) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cst (0.280073) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ese (0.126502) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.280073) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ese (0.126502) |