Non-Coding RNA Search

Ss1.1-Spl1-SPL01A120063.5

Sequence:


               
               GGTTGGCGTTGCAAATCCAGTGTTATCAGTGTGAAGAATTCCAGCTGAATAACGACTGCT
CCTCCCCCGAGTTCATCGTGAATTGCACCGTGAACGTTCAAGACATGTGTCAGAAAGAAG
TGATGGAGCAAAGTGCAGGAATCATGTACCGCAAGTCGTGTGCCTCGTCAGCGGCCTGCC
TCATCGCCTCAGCGGGGTACCAGTCCTTCTGCTCCCCAGGGAAACTGAACTCAGTGTGCA
TCAGCTGCTGCAACACCCCTCTTTGCAACGGGCCGAGGCCCAAGAAACGGAGCAGTTCTG
CCTCAGCTCACTGGCCAGGGCTCCTCAGCACCATCCTGCTCCTCAAATTAGCTCTTTTTT
TGGCACACTGCTGAAGCTGAAGGAGATGCCAGACCCTCCTGCTTTGTTCTTCTGGCCCGC
CCTCCCCCTGCTCCCCGAAATTCTGCTGGGTGTCCTTTTATTCTGGGTGGGGAGGAGACT
CTGTGTTCTTTTAGTTCCTTGGCAAATAACAAAATAGCTCAGTGTAAAAAAAAAAAAAAC
AAAAAATGATCTGAGCTCTGAAGAAATTCAGTCTGCCTGAATTTTCAGTGTGTCCTCAAA
GGAAGGAAGGCGGTAGAGTGAAAATTGCCCCAGTCTGTCCCCAGAGTGGAGGCCAGGCTG
GCAGAATCAGCCCTTAGGCGACACTTAAGTGGCCATATGCCTTCTCCCAGGCCACTCCTG
TCCCTGATAGTGGCAGTTTCTTTTGTCACTGCTGTAAGCAGGTAATATTCCTTTCCTGGG
GGGAGGGCCAGTGAGCACTCTAGGCGTCCTTCCTTAAAAGTCACACTTCGTGCTCTTGAA
TACCATTCTCGGTGGCAGGGTTGGCTGGTTTCATCACCGAGTCGGACTCTGGTGACTCAT
GATTCAACATCTGAGGCTTGGACTGGGGCTTGGCCTCACTCTCGCTCTGAGAAGTGCTTA
AGAAAACCTTGTCAGTTCTCCTTGCAGAGGAATTGCTCCTGGAAGCCAGGAAGATGAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTGGCGTTGCAAATCCAGTGTTATCAGTGTGAAGAATTCCAGCTGAATAACGACTGCT
CCTCCCCCGAGTTCATCGTGAATTGCACCGTGAACGTTCAAGACATGTGTCAGAAAGAAG
TGATGGAGCAAAGTGCAGGAATCATGTACCGCAAGTCGTGTGCCTCGTCAGCGGCCTGCC
TCATCGCCTCAGCGGGGTACCAGTCCTTCTGCTCCCCAGGGAAACTGAACTCAGTGTGCA
TCAGCTGCTGCAACACCCCTCTTTGCAACGGGCCGAGGCCCAAGAAACGGAGCAGTTCTG
CCTCAGCTCACTGGCCAGGGCTCCTCAGCACCATCCTGCTCCTCAAATTAGCTCTTTTTT
TGGCACACTGCTGAAGCTGAAGGAGATGCCAGACCCTCCTGCTTTGTTCTTCTGGCCCGC
CCTCCCCCTGCTCCCCGAAATTCTGCTGGGTGTCCTTTTATTCTGGGTGGGGAGGAGACT
CTGTGTTCTTTTAGTTCCTTGGCAAATAACAAAATAGCTCAGTGTAAAAAAAAAAAAAAC
AAAAAATGATCTGAGCTCTGAAGAAATTCAGTCTGCCTGAATTTTCAGTGTGTCCTCAAA
GGAAGGAAGGCGGTAGAGTGAAAATTGCCCCAGTCTGTCCCCAGAGTGGAGGCCAGGCTG
GCAGAATCAGCCCTTAGGCGACACTTAAGTGGCCATATGCCTTCTCCCAGGCCACTCCTG
TCCCTGATAGTGGCAGTTTCTTTTGTCACTGCTGTAAGCAGGTAATATTCCTTTCCTGGG
GGGAGGGCCAGTGAGCACTCTAGGCGTCCTTCCTTAAAAGTCACACTTCGTGCTCTTGAA
TACCATTCTCGGTGGCAGGGTTGGCTGGTTTCATCACCGAGTCGGACTCTGGTGACTCAT
GATTCAACATCTGAGGCTTGGACTGGGGCTTGGCCTCACTCTCGCTCTGAGAAGTGCTTA
AGAAAACCTTGTCAGTTCTCCTTGCAGAGGAATTGCTCCTGGAAGCCAGGAAGATGAGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q53RU6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53RU6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               214-412, - strand, RNAz p=0.979616

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               214-412, - strand, RNAz p=0.979616

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               134-1020, gnl|bosTau2|chr2 (41142712-41141835)
               

               
               134-1020, gnl|Hg17|chr2 (133237590-133236721)
               

               
               134-1020, gnl|Mm7|chr1 (125752046-125751155)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               134-1020, gnl|bosTau2|chr2 (41142712-41141835)
               

               
               134-1020, gnl|Hg17|chr2 (133237590-133236721)
               

               
               134-1020, gnl|Mm7|chr1 (125752046-125751155)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	134-1020, gnl\|bosTau2\|chr2 (41142712-41141835)
	134-1020, gnl\|Hg17\|chr2 (133237590-133236721)
	134-1020, gnl\|Mm7\|chr1 (125752046-125751155)