Non-Coding RNA Search

Ss1.1-Spl1-SPL01B030046.5

Sequence:


               
               CGACAAACTTACTTTAAACTTGATTTTTAGCACACGCTCTGTTAAAAAAAAAAAAAACAA
CTGTACATCCTGGGAGGAAATGAAACTAAAGAACAGTTAGAGTAACTGTTTAACCTCATA
ATCGAAAGGCAGTTGTTTCTTTACTAAGTAAAGCAAGCACATACATAAATGATGCTTTCT
TTTGATGGACACTTCCAACATTATTGAATATTTCGTTCAGTTGCCTACACTGTGGATATG
TGGATGAAAAGTCTTAATTGGAACTGTGACTTGTAAACCCACCGTAAGTTTATTTGGTTT
TCACCTGGAATTTCTATTTGGAACCCGCCCCCTCCTGGAATTTTAAGGACCTCTGCAACT
CTGAACAAAGGGAAATGCCCAAGATGTCCTGATCTAATTAGTTTAATTCTTTGGGACTTG
TTAAGCATTTCAAAAGAATTAGACTAACAGATTCCTGTGAAATTCTGTGTGTGTTCCAGC
TAACATCCATCAAAGTCTAGAAACAGATGTTTTCAGTGCTGCTGAGAGAAACAAAAAAAT
GTCCTAATGCATCTGAGAGATAAGCTTCTGCAGTATCACAAGAAGATTAAAGTGGCAGAC
ACTCCTTCCAGCGGAAGTTACTAATTCGGACCTGACTGATGCAGTTCCCATAGCAACCTG
TGTTCCCCGGGAAACCCGAAAAGGTTGTCATGGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACAAACTTACTTTAAACTTGATTTTTAGCACACGCTCTGTTAAAAAAAAAAAAAACAA
CTGTACATCCTGGGAGGAAATGAAACTAAAGAACAGTTAGAGTAACTGTTTAACCTCATA
ATCGAAAGGCAGTTGTTTCTTTACTAAGTAAAGCAAGCACATACATAAATGATGCTTTCT
TTTGATGGACACTTCCAACATTATTGAATATTTCGTTCAGTTGCCTACACTGTGGATATG
TGGATGAAAAGTCTTAATTGGAACTGTGACTTGTAAACCCACCGTAAGTTTATTTGGTTT
TCACCTGGAATTTCTATTTGGAACCCGCCCCCTCCTGGAATTTTAAGGACCTCTGCAACT
CTGAACAAAGGGAAATGCCCAAGATGTCCTGATCTAATTAGTTTAATTCTTTGGGACTTG
TTAAGCATTTCAAAAGAATTAGACTAACAGATTCCTGTGAAATTCTGTGTGTGTTCCAGC
TAACATCCATCAAAGTCTAGAAACAGATGTTTTCAGTGCTGCTGAGAGAAACAAAAAAAT
GTCCTAATGCATCTGAGAGATAAGCTTCTGCAGTATCACAAGAAGATTAAAGTGGCAGAC
ACTCCTTCCAGCGGAAGTTACTAATTCGGACCTGACTGATGCAGTTCCCATAGCAACCTG
TGTTCCCCGGGAAACCCGAAAAGGTTGTCATGGCAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               46-696, gnl|bosTau2|chr3 (30060434-30059784)
               

               
               46-696, gnl|Hg17|chr1 (110927460-110926809)
               

               
               46-696, gnl|Mm7|chr3 (106856580-106857204)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-696, gnl|bosTau2|chr3 (30060434-30059784)
               

               
               46-696, gnl|Hg17|chr1 (110927460-110926809)
               

               
               46-696, gnl|Mm7|chr3 (106856580-106857204)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbl (0.344392)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               tra (0.123092)

	46-696, gnl\|bosTau2\|chr3 (30060434-30059784)
	46-696, gnl\|Hg17\|chr1 (110927460-110926809)
	46-696, gnl\|Mm7\|chr3 (106856580-106857204)