Non-Coding RNA Search

Ss1.1-Spl1-SPL01B030081.5.5

Sequence:


               
               CTTTTCCGCGTCCCTTGCGGCGGGCGTCAGGCCCGGTCAGCGGAGTCTGCTCTAAGGTTT
TGCGGCCAACGGGTACTTCGCAGTTCTCCCGCCGCAGCCGCCGCTGCTCCGTGGGGAGAA
GATGGTGGGCCGGAACAGCGCCATTGCCGCCGGCGTGTGCGGGGCCCTTTTCATCGGGTA
CTGCATTTACTTCGACCGCAAGAGACGAAGTGACCCCAACTTCAAGAACAGGCTGCGAGA
ACGAAGAAAGAAACAAAAGCTTGCTAAGGAGAGAGCTGGACTTTCCAAGTTACCTGACCT
TAAAGATGCTGAGGCTGTTCAGAAATTCTTCCTCGAAGAAATTCAGCTTGGTGAAGAGTT
ACTAGCTCAAGGTGAATATGAGAAGGGTGTAGACCATCTGACAAATGCCATTGCTGTGTG
TGGACAGCCACAGCAGTTACTGCAAGTGTTACAGCAAACTCTTCCACCACCAGTGTTCCA
GATGCTTCTGACTAAGCTCCCAACAATTAGTCAGAGAATTGTAAGTGCTCAGAGCTTGGC
TGAAGATGATGTGGAGTGAGAAACAAATGTCAACATAATTAAAAATATTTTTAAATCTTA
ACTTGGAAGATGAGCAGCTCTGGGGGAGTAAGGGCAAATAATGCTTGTTATGGACTGTCC
TACACTGAAATCTACCAAAGTTAATTTTTACTTTGTGTAGATCTGTTTGTCTGTTTTATT
TATTTTTCCCAGTGAAAAGTGTATTTTGATAGAGAGCCTTTCCCTTTTATAAATACACTA
TGAGTTACTGAAACATGGATTTTGTTTATTCCTGAGATATGCATTTAAAATGTATATGGA
ACATTACACTGCTTACATTAAAAATGCCTAGTCCTGGAGTTCCCTTGTAGTGTAGCAGGT
TAAGGATCCAGCGTTGTCACTGCAACATTGTCACTGCAGTGGCTTGGGTTGCTGCCATAA
ATGGGTTTGATCCCTGGCTTGGGAACTTCCACATGCCACGGGTTCAGATTAAAAAACCCA
ATGTTCAGCTTTGAAAGAGAGACCATAAGTGGTGTAGAAAGCTGAAGAATGAACTTATTT
TTTAAAAAGGTCCAATACACTTTTGCTGCACATCAGAAAATTGGATGAAAACTTGATTGT
TTATCAAAACTGAGCATTAAAGTCTTTGAGAGATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTCCGCGTCCCTTGCGGCGGGCGTCAGGCCCGGTCAGCGGAGTCTGCTCTAAGGTTT
TGCGGCCAACGGGTACTTCGCAGTTCTCCCGCCGCAGCCGCCGCTGCTCCGTGGGGAGAA
GATGGTGGGCCGGAACAGCGCCATTGCCGCCGGCGTGTGCGGGGCCCTTTTCATCGGGTA
CTGCATTTACTTCGACCGCAAGAGACGAAGTGACCCCAACTTCAAGAACAGGCTGCGAGA
ACGAAGAAAGAAACAAAAGCTTGCTAAGGAGAGAGCTGGACTTTCCAAGTTACCTGACCT
TAAAGATGCTGAGGCTGTTCAGAAATTCTTCCTCGAAGAAATTCAGCTTGGTGAAGAGTT
ACTAGCTCAAGGTGAATATGAGAAGGGTGTAGACCATCTGACAAATGCCATTGCTGTGTG
TGGACAGCCACAGCAGTTACTGCAAGTGTTACAGCAAACTCTTCCACCACCAGTGTTCCA
GATGCTTCTGACTAAGCTCCCAACAATTAGTCAGAGAATTGTAAGTGCTCAGAGCTTGGC
TGAAGATGATGTGGAGTGAGAAACAAATGTCAACATAATTAAAAATATTTTTAAATCTTA
ACTTGGAAGATGAGCAGCTCTGGGGGAGTAAGGGCAAATAATGCTTGTTATGGACTGTCC
TACACTGAAATCTACCAAAGTTAATTTTTACTTTGTGTAGATCTGTTTGTCTGTTTTATT
TATTTTTCCCAGTGAAAAGTGTATTTTGATAGAGAGCCTTTCCCTTTTATAAATACACTA
TGAGTTACTGAAACATGGATTTTGTTTATTCCTGAGATATGCATTTAAAATGTATATGGA
ACATTACACTGCTTACATTAAAAATGCCTAGTCCTGGAGTTCCCTTGTAGTGTAGCAGGT
TAAGGATCCAGCGTTGTCACTGCAACATTGTCACTGCAGTGGCTTGGGTTGCTGCCATAA
ATGGGTTTGATCCCTGGCTTGGGAACTTCCACATGCCACGGGTTCAGATTAAAAAACCCA
ATGTTCAGCTTTGAAAGAGAGACCATAAGTGGTGTAGAAAGCTGAAGAATGAACTTATTT
TTTAAAAAGGTCCAATACACTTTTGCTGCACATCAGAAAATTGGATGAAAACTTGATTGT
TTATCAAAACTGAGCATTAAAGTCTTTGAGAGATTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5RA31_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5RA31_PONPY

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               342-461, - strand, RNAz p=0.511422
               

               
               602-788, - strand, RNAz p=0.988535

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               342-461, - strand, RNAz p=0.511422
               

               
               602-788, - strand, RNAz p=0.988535

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               17-821, gnl|bosTau2|chr23 (20993388-20992578)
               

               
               17-821, gnl|Hg17|chrX (72225875-72226762)
               

               
               17-821, gnl|Mm7|chr2 (153566929-153567727)
               


               
               104-788, gnl|bosTau2|chr13 (47685082-47685760)
               

               
               104-788, gnl|Hg17|chrX (72225963-72226648)
               

               
               104-788, gnl|Mm7|chr2 (153567011-153567683)
               


               
               991-1161, gnl|bosTau2|chr9 (10612421-10612591)
               

               
               991-1161, gnl|Hg17|chrX (72226703-72226863)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-821, gnl|bosTau2|chr23 (20993388-20992578)
               

               
               17-821, gnl|Hg17|chrX (72225875-72226762)
               

               
               17-821, gnl|Mm7|chr2 (153566929-153567727)
               


               
               104-788, gnl|bosTau2|chr13 (47685082-47685760)
               

               
               104-788, gnl|Hg17|chrX (72225963-72226648)
               

               
               104-788, gnl|Mm7|chr2 (153567011-153567683)
               


               
               991-1161, gnl|bosTau2|chr9 (10612421-10612591)
               

               
               991-1161, gnl|Hg17|chrX (72226703-72226863)

Expressed library(ies): 51 entry(ies)

More info

Expressed library(ies): 51 entry(ies)

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               ece (0.917221)
               

               
               cmu (0.745573)
               

               
               pan (0.707881)
               

               
               lyg (0.665513)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               cki (0.495704)
               

               
               isp (0.451128)
               

               
               ski (0.440205)
               

               
               lin (0.436808)
               

               
               eje (0.395335)
               

               
               kid (0.389206)
               

               
               ova (0.387397)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               pgl (0.35545)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               tra (0.246184)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 51 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.917221)
               

               
               cmu (0.745573)
               

               
               pan (0.707881)
               

               
               lyg (0.665513)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               cki (0.495704)
               

               
               isp (0.451128)
               

               
               ski (0.440205)
               

               
               lin (0.436808)
               

               
               eje (0.395335)
               

               
               kid (0.389206)
               

               
               ova (0.387397)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               pgl (0.35545)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               cte (0.29274)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               tra (0.246184)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	342-461, - strand, RNAz p=0.511422
	602-788, - strand, RNAz p=0.988535

	17-821, gnl\|bosTau2\|chr23 (20993388-20992578)
	17-821, gnl\|Hg17\|chrX (72225875-72226762)
	17-821, gnl\|Mm7\|chr2 (153566929-153567727)

	104-788, gnl\|bosTau2\|chr13 (47685082-47685760)
	104-788, gnl\|Hg17\|chrX (72225963-72226648)
	104-788, gnl\|Mm7\|chr2 (153567011-153567683)

	991-1161, gnl\|bosTau2\|chr9 (10612421-10612591)
	991-1161, gnl\|Hg17\|chrX (72226703-72226863)

	ece (0.917221)
	cmu (0.745573)
	pan (0.707881)
	lyg (0.665513)
	sin (0.524843)
	pro (0.512033)
	cki (0.495704)
	isp (0.451128)
	ski (0.440205)
	lin (0.436808)
	eje (0.395335)
	kid (0.389206)
	ova (0.387397)
	ret (0.3862)
	sug (0.381874)
	thg (0.380373)
	sag (0.36543)
	pgl (0.35545)
	rec (0.346141)
	vin (0.332557)
	cje (0.330469)
	sme (0.305437)
	lun (0.300978)
	cte (0.29274)
	pty (0.285429)
	csk (0.281492)
	tra (0.246184)
	jca (0.22792)
	tes (0.207814)
	hea (0.204499)
	ldo (0.194005)
	nlu (0.191681)
	nep (0.183925)
	mgm (0.180343)
	fty (0.17584)
	cut (0.169924)
	nje (0.16592)
	fat (0.147427)
	hyp (0.142837)
	lnt (0.142308)
	nca (0.136874)
	che (0.136314)
	ste (0.135208)
	pla (0.133672)
	ute (0.132784)
	ese (0.126502)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)