Ss1.1-Spl1-SPL01B060089.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTGGCGTCCCGGAAGGAGCGAGCTGCGGCGTCTGAGCAAGCGAGTGAGTGAAAGCGGC GCCGCCCGCCGGCCGCAGGCGCGGCTGGTGCCGGGCGTTCCCCTGCCTTTTGGTCTTGGG TTTCCCCAAAGAAGGCGGCGAGGGGCGTGTAGCCCAGCCACGTATCCTTGCAGTCAGTTC CCCAAATAGGGCCTCCTGTCCCCTGCCGCCCGCGCTACTCGTTGGGCTGGGCGCGCCATC CCCACACCGCAGCCCGTGTAGCTTTCTCATCTAGGTCCCTGGCCCCTGCCCTGTCGCCCC GCCGCCGGAGCGGTCACCGCCCGTTCCACCGTTCCTCCGCTGCCACCGCTGCCGGCAACC ATGGGCAGTGAGCAGAGCTCCGAGGCCGAGAGCCGACCCAACGATCTGAACTCCTCAGTG GCCCCTTCTCCAGCTAAGCATAGAGCCAAGATGGATGATATTGTGGTTGTAGCTCAGGGC TCCCAGGCCTCACGGAATGTCAGCAATGATCCTGATGTCATCAAGTTGCAAGAGATTCCA ACCTTCCAGCCACTTTTGAAAGGGCTACTGAGTGGCCAGACATCCCCAACAAACACCAAA TTGGAGAAATTGGATTCTCAGCAGGTGCTGCAGCTCTGCCTCCGCTACCAGGATCACCTC CATCAGTGTGCAGAGGCCGTGGCCTTTGACCAGAACGCTTTGGTTAAGCGAATCAAAGAG ATGGATCTGTCTGTAGAAACCCTCTTCAGCTTCATGCAGGAGCGCCAGAAAAGATACGCC AAATACGCAGAGCAGATCCAGAAGGTCAACGAAATGTCGGCTATCCTACGCCGCATCCAG ATGGGTATCGACCAGACGGTGCCGCTGCTGGAGCGGCTCAACAGCCTGCTGCCCGAGGCC GAGCGCCTGGAGCCCTTCAGCATGAAGCCTGAGCGGGAACTCAGGCTCTAGCCACTTCAC CCCACCAGCTGTGGGCGTAGATCAGCATCGCCAGGGCCCTGGGACGATTGGAACCACAGT CATGGGAGGTGACCGAAGGCCACTGGAGGCGTTGACACTCCTGAGGGCAGGGGAAGCGGT CCAGCCCCGCTGGAGACCCGTGAGGCCCAGCCCTTCCCTCCTGCACTTTCCCTGCAAAGC CAACAAACCAACTCTCAGTGGTCACCGAAGGTGGAACGTCTGAACTGTTAGGAATTCTTT ACAGAACTTTGCCTCGGGAATTATTTTTATTTTGTTTAGTTGCATTTTTTTTTTAATTGA CAGTGTCTATTACCTAGTCTTAGCTTGCAGAGTGAAAATGTCAAGGGTAAAAATATTTTA AGAAGCTCTGTGTTCTTGATGCCTTGGTGCCATTTCTCTCAGTAGGCTGTCTGGGTTGTA AACATAAAGAATGAATTTAATCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTGGCGTCCCGGAAGGAGCGAGCTGCGGCGTCTGAGCAAGCGAGTGAGTGAAAGCGGC GCCGCCCGCCGGCCGCAGGCGCGGCTGGTGCCGGGCGTTCCCCTGCCTTTTGGTCTTGGG TTTCCCCAAAGAAGGCGGCGAGGGGCGTGTAGCCCAGCCACGTATCCTTGCAGTCAGTTC CCCAAATAGGGCCTCCTGTCCCCTGCCGCCCGCGCTACTCGTTGGGCTGGGCGCGCCATC CCCACACCGCAGCCCGTGTAGCTTTCTCATCTAGGTCCCTGGCCCCTGCCCTGTCGCCCC GCCGCCGGAGCGGTCACCGCCCGTTCCACCGTTCCTCCGCTGCCACCGCTGCCGGCAACC ATGGGCAGTGAGCAGAGCTCCGAGGCCGAGAGCCGACCCAACGATCTGAACTCCTCAGTG GCCCCTTCTCCAGCTAAGCATAGAGCCAAGATGGATGATATTGTGGTTGTAGCTCAGGGC TCCCAGGCCTCACGGAATGTCAGCAATGATCCTGATGTCATCAAGTTGCAAGAGATTCCA ACCTTCCAGCCACTTTTGAAAGGGCTACTGAGTGGCCAGACATCCCCAACAAACACCAAA TTGGAGAAATTGGATTCTCAGCAGGTGCTGCAGCTCTGCCTCCGCTACCAGGATCACCTC CATCAGTGTGCAGAGGCCGTGGCCTTTGACCAGAACGCTTTGGTTAAGCGAATCAAAGAG ATGGATCTGTCTGTAGAAACCCTCTTCAGCTTCATGCAGGAGCGCCAGAAAAGATACGCC AAATACGCAGAGCAGATCCAGAAGGTCAACGAAATGTCGGCTATCCTACGCCGCATCCAG ATGGGTATCGACCAGACGGTGCCGCTGCTGGAGCGGCTCAACAGCCTGCTGCCCGAGGCC GAGCGCCTGGAGCCCTTCAGCATGAAGCCTGAGCGGGAACTCAGGCTCTAGCCACTTCAC CCCACCAGCTGTGGGCGTAGATCAGCATCGCCAGGGCCCTGGGACGATTGGAACCACAGT CATGGGAGGTGACCGAAGGCCACTGGAGGCGTTGACACTCCTGAGGGCAGGGGAAGCGGT CCAGCCCCGCTGGAGACCCGTGAGGCCCAGCCCTTCCCTCCTGCACTTTCCCTGCAAAGC CAACAAACCAACTCTCAGTGGTCACCGAAGGTGGAACGTCTGAACTGTTAGGAATTCTTT ACAGAACTTTGCCTCGGGAATTATTTTTATTTTGTTTAGTTGCATTTTTTTTTTAATTGA CAGTGTCTATTACCTAGTCTTAGCTTGCAGAGTGAAAATGTCAAGGGTAAAAATATTTTA AGAAGCTCTGTGTTCTTGATGCCTTGGTGCCATTTCTCTCAGTAGGCTGTCTGGGTTGTA AACATAAAGAATGAATTTAATCCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-418, gnl|bosTau2|chr7 (1267604-1267183) | |
| 1-418, gnl|Hg17|chr12 (12401278-12401710) | |
| 719-954, gnl|bosTau2|chr7 (1171747-1171512) | |
| 719-954, gnl|canFam2|chr27 (36857485-36857189) | |
| 719-954, gnl|danRer3|chr25 (12544882-12544643) | |
| 719-954, gnl|dasNov1|scaffold_66463 (2281-1991) | |
| 719-954, gnl|echTel1|scaffold_320556 (12705-12417) | |
| 719-954, gnl|fr1|chrUn (220646609-220646336) | |
| 719-954, gnl|galGal2|chrUn (130860342-130860626) | |
| 719-954, gnl|hg17|chr12 (12509710-12510003) | |
| 719-954, gnl|Hg17|chr12 (12509745-12509979) | |
| 719-954, gnl|loxAfr1|scaffold_1381 (136992-136692) | |
| 719-954, gnl|mm7|chr6 (134724328-134724603) | |
| 719-954, gnl|Mm7|chr6 (134724364-134724584) | |
| 719-954, gnl|monDom2|scaffold_31 (18925234-18924939) | |
| 719-954, gnl|oryCun1|scaffold_202753 (83410-83112) | |
| 719-954, gnl|panTro1|chrUn_random (38759293-38759586) | |
| 719-954, gnl|rheMac2|chr11 (12819890-12820183) | |
| 719-954, gnl|rn3|chr4 (171858064-171858341) | |
| 719-954, gnl|tetNig1|chr13 (11588830-11588570) | |
| 985-1404, gnl|bosTau2|chr7 (1171502-1171077) | |
| 985-1404, gnl|Hg17|chr12 (12509988-12510438) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-418, gnl|bosTau2|chr7 (1267604-1267183) | |
| 1-418, gnl|Hg17|chr12 (12401278-12401710) | |
| 719-954, gnl|bosTau2|chr7 (1171747-1171512) | |
| 719-954, gnl|canFam2|chr27 (36857485-36857189) | |
| 719-954, gnl|danRer3|chr25 (12544882-12544643) | |
| 719-954, gnl|dasNov1|scaffold_66463 (2281-1991) | |
| 719-954, gnl|echTel1|scaffold_320556 (12705-12417) | |
| 719-954, gnl|fr1|chrUn (220646609-220646336) | |
| 719-954, gnl|galGal2|chrUn (130860342-130860626) | |
| 719-954, gnl|hg17|chr12 (12509710-12510003) | |
| 719-954, gnl|Hg17|chr12 (12509745-12509979) | |
| 719-954, gnl|loxAfr1|scaffold_1381 (136992-136692) | |
| 719-954, gnl|mm7|chr6 (134724328-134724603) | |
| 719-954, gnl|Mm7|chr6 (134724364-134724584) | |
| 719-954, gnl|monDom2|scaffold_31 (18925234-18924939) | |
| 719-954, gnl|oryCun1|scaffold_202753 (83410-83112) | |
| 719-954, gnl|panTro1|chrUn_random (38759293-38759586) | |
| 719-954, gnl|rheMac2|chr11 (12819890-12820183) | |
| 719-954, gnl|rn3|chr4 (171858064-171858341) | |
| 719-954, gnl|tetNig1|chr13 (11588830-11588570) | |
| 985-1404, gnl|bosTau2|chr7 (1171502-1171077) | |
| 985-1404, gnl|Hg17|chr12 (12509988-12510438) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| med (0.348756) | |
| ill (0.175593) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| eep (0.122564) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.348756) | |
| ill (0.175593) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| eep (0.122564) |