Ss1.1-Spl1-SPL01B060100.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTGCGGAAGAAGACCGGGGGTGAGAAGATGCCCGTGCAAATGATCGGGGACATCCTGG CAGCCGAGCTGTCCCACATGCAGGCCTACATACGGTTCTGCAGCTGTCAGCTGAATGGCG CAGCGCTGTTACAGCAGAAGACAGATGAACACGCGGACTTCAAGGAATTCCTAAAGAAGC TGGCCTCGGACCCTCGATGTAAAGGAATGCCTCTTTCCAGCTTCCTGCTGAAGCCCATGC AGAGGATCACCCGCTACCCCCTCCTCATCAGAAGCATCCTGGAGAACACCCCGGAGAATC ACGTAGACCACTCCTCTCTGAAACTGGCCCTCGAGCGGGCGGAGGAGCTCTGCTCTCAGG TCAACGAAGGAGTTCGGGAGAAGGAAAACTCGGACCGACTGGAGTGGATCCAGACGCACG TTCAGTGTGAAGGTCTCACTGAGCAACTGGTTTTCAACTCGCTCACCAACTGCCTGGGGC CCCGGAAGCTCCTGCACAGTGGGAAGCTGTACAAGACCAAGAGCAATAAGGAGCTGCACG GATTCCTCTTCAATGACTTCCTGCTTCTTACCTACATGGTCAAGCAGTTTGCTGTTTCCT CGGGTTCTGAGAAACTTTTCAGCTCTAAGTCCAATGCTCAATTCAGAATGTATAAGACGC CGATTTTCCTGAATGAAGCCTTGGTGAAACTGCCCACAGACCCTTCCAGCGATGAGCCTG TCTTCCACATTTCTCACATTGACCGAGTCTACACCCTCCGAACAGACAACATTAACGAGA GGACGGCCTGGGTGCAGAAGATCAAGGCGGCGTCTGAGCAGTACATCGACACGGAGAAGA AGAAGCGGGAGAAAGCGTATCAAGCTCGCTCTCAAAAGACTTCAGGCATCGGGCGTCTGA TGGTGCACATCATTGAAGCTACAGAACTAAAAGCCTGTAAACCAAATGGAAAGAGNCATC CGTACTGTGAAATCAGCATGGGCTCCCAGAGCTACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTGCGGAAGAAGACCGGGGGTGAGAAGATGCCCGTGCAAATGATCGGGGACATCCTGG CAGCCGAGCTGTCCCACATGCAGGCCTACATACGGTTCTGCAGCTGTCAGCTGAATGGCG CAGCGCTGTTACAGCAGAAGACAGATGAACACGCGGACTTCAAGGAATTCCTAAAGAAGC TGGCCTCGGACCCTCGATGTAAAGGAATGCCTCTTTCCAGCTTCCTGCTGAAGCCCATGC AGAGGATCACCCGCTACCCCCTCCTCATCAGAAGCATCCTGGAGAACACCCCGGAGAATC ACGTAGACCACTCCTCTCTGAAACTGGCCCTCGAGCGGGCGGAGGAGCTCTGCTCTCAGG TCAACGAAGGAGTTCGGGAGAAGGAAAACTCGGACCGACTGGAGTGGATCCAGACGCACG TTCAGTGTGAAGGTCTCACTGAGCAACTGGTTTTCAACTCGCTCACCAACTGCCTGGGGC CCCGGAAGCTCCTGCACAGTGGGAAGCTGTACAAGACCAAGAGCAATAAGGAGCTGCACG GATTCCTCTTCAATGACTTCCTGCTTCTTACCTACATGGTCAAGCAGTTTGCTGTTTCCT CGGGTTCTGAGAAACTTTTCAGCTCTAAGTCCAATGCTCAATTCAGAATGTATAAGACGC CGATTTTCCTGAATGAAGCCTTGGTGAAACTGCCCACAGACCCTTCCAGCGATGAGCCTG TCTTCCACATTTCTCACATTGACCGAGTCTACACCCTCCGAACAGACAACATTAACGAGA GGACGGCCTGGGTGCAGAAGATCAAGGCGGCGTCTGAGCAGTACATCGACACGGAGAAGA AGAAGCGGGAGAAAGCGTATCAAGCTCGCTCTCAAAAGACTTCAGGCATCGGGCGTCTGA TGGTGCACATCATTGAAGCTACAGAACTAAAAGCCTGTAAACCAAATGGAAAGAGNCATC CGTACTGTGAAATCAGCATGGGCTCCCAGAGCTACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 276-394, - strand, RNAz p=0.61747 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 276-394, - strand, RNAz p=0.61747 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-176, gnl|bosTau2|chr11 (56254382-56254557) | |
| 1-176, gnl|canFam2|chr17 (21620529-21620733) | |
| 1-176, gnl|danRer3|chr20 (27346076-27345871) | |
| 1-176, gnl|dasNov1|scaffold_108379 (1255-1051) | |
| 1-176, gnl|echTel1|scaffold_283172 (1024-1228) | |
| 1-176, gnl|fr1|chrUn (195204939-195205213) | |
| 1-176, gnl|galGal2|chr3 (102439810-102440006) | |
| 1-176, gnl|hg17|chr2 (24350559-24350763) | |
| 1-176, gnl|Hg17|chr2 (24350744-24350569) | |
| 1-176, gnl|loxAfr1|scaffold_13549 (12449-12653) | |
| 1-176, gnl|mm7|chr12 (4633693-4633489) | |
| 1-176, gnl|Mm7|chr12 (4633506-4633681) | |
| 1-176, gnl|monDom2|scaffold_29 (13846370-13846567) | |
| 1-176, gnl|oryCun1|scaffold_200093 (64761-64965) | |
| 1-176, gnl|panTro1|chr12 (25228493-25228697) | |
| 1-176, gnl|rheMac2|chr19 (8337619-8337422) | |
| 1-176, gnl|rn3|chrUn (42852176-42852380) | |
| 1-176, gnl|tetNig1|chr14 (6089087-6088893) | |
| 1-176, gnl|xenTro1|scaffold_226 (443852-443652) | |
| 276-433, gnl|bosTau2|chr1 (1668974-1669131) | |
| 276-433, gnl|Hg17|chr21 (34169528-34169685) | |
| 276-433, gnl|Mm7|chr16 (91949851-91950008) | |
| 434-671, gnl|bosTau2|chr11 (56259394-56259631) | |
| 434-671, gnl|Hg17|chr2 (24344563-24344320) | |
| 434-671, gnl|Mm7|chr12 (4639909-4640142) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-176, gnl|bosTau2|chr11 (56254382-56254557) | |
| 1-176, gnl|canFam2|chr17 (21620529-21620733) | |
| 1-176, gnl|danRer3|chr20 (27346076-27345871) | |
| 1-176, gnl|dasNov1|scaffold_108379 (1255-1051) | |
| 1-176, gnl|echTel1|scaffold_283172 (1024-1228) | |
| 1-176, gnl|fr1|chrUn (195204939-195205213) | |
| 1-176, gnl|galGal2|chr3 (102439810-102440006) | |
| 1-176, gnl|hg17|chr2 (24350559-24350763) | |
| 1-176, gnl|Hg17|chr2 (24350744-24350569) | |
| 1-176, gnl|loxAfr1|scaffold_13549 (12449-12653) | |
| 1-176, gnl|mm7|chr12 (4633693-4633489) | |
| 1-176, gnl|Mm7|chr12 (4633506-4633681) | |
| 1-176, gnl|monDom2|scaffold_29 (13846370-13846567) | |
| 1-176, gnl|oryCun1|scaffold_200093 (64761-64965) | |
| 1-176, gnl|panTro1|chr12 (25228493-25228697) | |
| 1-176, gnl|rheMac2|chr19 (8337619-8337422) | |
| 1-176, gnl|rn3|chrUn (42852176-42852380) | |
| 1-176, gnl|tetNig1|chr14 (6089087-6088893) | |
| 1-176, gnl|xenTro1|scaffold_226 (443852-443652) | |
| 276-433, gnl|bosTau2|chr1 (1668974-1669131) | |
| 276-433, gnl|Hg17|chr21 (34169528-34169685) | |
| 276-433, gnl|Mm7|chr16 (91949851-91950008) | |
| 434-671, gnl|bosTau2|chr11 (56259394-56259631) | |
| 434-671, gnl|Hg17|chr2 (24344563-24344320) | |
| 434-671, gnl|Mm7|chr12 (4639909-4640142) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) | |
| pgl (0.118483) |