Ss1.1-Spl1-SPL01B080054.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACGAACATGGCCCATGCTGCACGGGTTCTCTGGCCCAGCGGGCGCGCCCTGGCCTGGA GACTGGGCGGTCGTCCCTCTCTAAGACTCCCCGAGCAGAGCCGGGCGGGCTTCACCGGAG CGGCGGGAGGCCCAGGCCCCACCGCCACCACCCGCAAGGGGGGCCCACGGCTCCTGGGGG CGGCAGCACTGGCCTTGGGGGGCGCCCTGGGGCTGTACCACACCGTGCGGTGGCACCTTC GCGCCCAGGACCTCCGAGCGGAGCGCACAGCCGCGCAGCTCTTGCTGTCCAGCCGCCTGC AGCTGACTCTATACCAGTACAAGACGTGTCCATTCTGCAGCAAAGTCCGCGCCTTCCTCG ACTTCCACGCCCTGCCCTACCAGGTGGTGGAGGTGAACCCTGTCCGCAGGGCCGAGATCA AGTTCTCCTCCTACAGGAAGGTGCCCATCCTGCTGGCCCAGGAAGGAGACAGCTTGCAAC AACTGAATGACTCCTCTGTCATCATCAGCGCCCTGAAGACCTACCTGGTGTCAGGGCAGC CCCTGGAAGACATCGTCACCTACTACCCGCCCATGAAGGCTGTCAACGAGCAGGGCAAGG AGGTGACCGAGTTCTGCAACAAATACTGGCTCATGCTGGATGAGAAGGAGGCCCAGCGGA TGTACGGTGGAAAGGAGGCGAGGACAGAGGAGATGAAGTGGCGGCAGTGGGCAGATGACT GGCTGGTGCACCTGATCTCCCCCAACGTGTACCGCACGCCGGCCGAGGCCCTGGCCTCCT TCGACTACATTGTCAAGGAGGGCAATTTCGGGACGGTGGAGGGCGCCATGGCCAAGTACA TGGGCGCAGCTGCCATGTACCTCATCAGCAAGCGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACGAACATGGCCCATGCTGCACGGGTTCTCTGGCCCAGCGGGCGCGCCCTGGCCTGGA GACTGGGCGGTCGTCCCTCTCTAAGACTCCCCGAGCAGAGCCGGGCGGGCTTCACCGGAG CGGCGGGAGGCCCAGGCCCCACCGCCACCACCCGCAAGGGGGGCCCACGGCTCCTGGGGG CGGCAGCACTGGCCTTGGGGGGCGCCCTGGGGCTGTACCACACCGTGCGGTGGCACCTTC GCGCCCAGGACCTCCGAGCGGAGCGCACAGCCGCGCAGCTCTTGCTGTCCAGCCGCCTGC AGCTGACTCTATACCAGTACAAGACGTGTCCATTCTGCAGCAAAGTCCGCGCCTTCCTCG ACTTCCACGCCCTGCCCTACCAGGTGGTGGAGGTGAACCCTGTCCGCAGGGCCGAGATCA AGTTCTCCTCCTACAGGAAGGTGCCCATCCTGCTGGCCCAGGAAGGAGACAGCTTGCAAC AACTGAATGACTCCTCTGTCATCATCAGCGCCCTGAAGACCTACCTGGTGTCAGGGCAGC CCCTGGAAGACATCGTCACCTACTACCCGCCCATGAAGGCTGTCAACGAGCAGGGCAAGG AGGTGACCGAGTTCTGCAACAAATACTGGCTCATGCTGGATGAGAAGGAGGCCCAGCGGA TGTACGGTGGAAAGGAGGCGAGGACAGAGGAGATGAAGTGGCGGCAGTGGGCAGATGACT GGCTGGTGCACCTGATCTCCCCCAACGTGTACCGCACGCCGGCCGAGGCCCTGGCCTCCT TCGACTACATTGTCAAGGAGGGCAATTTCGGGACGGTGGAGGGCGCCATGGCCAAGTACA TGGGCGCAGCTGCCATGTACCTCATCAGCAAGCGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 759-876, + strand, RNAz p=0.721104 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 759-876, + strand, RNAz p=0.721104 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 6-278, gnl|bosTau2|chr11 (77620224-77619952) | |
| 6-278, gnl|Hg17|chr9 (127969553-127969272) | |
| 6-278, gnl|Mm7|chr2 (32403583-32403861) | |
| 535-685, gnl|bosTau2|chr11 (77617350-77617200) | |
| 535-685, gnl|canFam2|chr9 (58691258-58691100) | |
| 535-685, gnl|danRer3|chr8 (23959597-23959457) | |
| 535-685, gnl|echTel1|scaffold_130978 (903-1061) | |
| 535-685, gnl|fr1|chrUn (245193858-245194000) | |
| 535-685, gnl|galGal2|chr17 (5647164-5647322) | |
| 535-685, gnl|hg17|chr9 (127965529-127965687) | |
| 535-685, gnl|Hg17|chr9 (127965685-127965535) | |
| 535-685, gnl|loxAfr1|scaffold_8335 (66494-66336) | |
| 535-685, gnl|mm7|chr2 (32407871-32407713) | |
| 535-685, gnl|Mm7|chr2 (32407713-32407863) | |
| 535-685, gnl|monDom2|scaffold_51 (2656866-2657024) | |
| 535-685, gnl|panTro1|chr11 (112795832-112795990) | |
| 535-685, gnl|rheMac2|chr15 (98439878-98439720) | |
| 535-685, gnl|rn3|chr3 (11422672-11422514) | |
| 535-685, gnl|tetNig1|chr12 (10058983-10058840) | |
| 535-685, gnl|xenTro1|scaffold_82 (420923-420765) | |
| 687-876, gnl|bosTau2|chr11 (77616932-77616743) | |
| 687-876, gnl|canFam2|chr9 (58691796-58691520) | |
| 687-876, gnl|danRer3|chr8 (23959933-23959716) | |
| 687-876, gnl|echTel1|scaffold_130978 (395-621) | |
| 687-876, gnl|fr1|chrUn (245193550-245193765) | |
| 687-876, gnl|galGal2|chr17 (5646414-5646653) | |
| 687-876, gnl|hg17|chr9 (127964740-127964981) | |
| 687-876, gnl|Hg17|chr9 (127964966-127964777) | |
| 687-876, gnl|loxAfr1|scaffold_8335 (67090-66833) | |
| 687-876, gnl|mm7|chr2 (32408433-32408181) | |
| 687-876, gnl|Mm7|chr2 (32408190-32408379) | |
| 687-876, gnl|monDom2|scaffold_51 (2655514-2655739) | |
| 687-876, gnl|panTro1|chr11 (112794905-112795147) | |
| 687-876, gnl|rheMac2|chr15 (98440963-98440722) | |
| 687-876, gnl|rn3|chr3 (11423227-11422972) | |
| 687-876, gnl|tetNig1|chr12 (10059307-10059082) | |
| 687-876, gnl|xenTro1|scaffold_82 (421225-420996) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-278, gnl|bosTau2|chr11 (77620224-77619952) | |
| 6-278, gnl|Hg17|chr9 (127969553-127969272) | |
| 6-278, gnl|Mm7|chr2 (32403583-32403861) | |
| 535-685, gnl|bosTau2|chr11 (77617350-77617200) | |
| 535-685, gnl|canFam2|chr9 (58691258-58691100) | |
| 535-685, gnl|danRer3|chr8 (23959597-23959457) | |
| 535-685, gnl|echTel1|scaffold_130978 (903-1061) | |
| 535-685, gnl|fr1|chrUn (245193858-245194000) | |
| 535-685, gnl|galGal2|chr17 (5647164-5647322) | |
| 535-685, gnl|hg17|chr9 (127965529-127965687) | |
| 535-685, gnl|Hg17|chr9 (127965685-127965535) | |
| 535-685, gnl|loxAfr1|scaffold_8335 (66494-66336) | |
| 535-685, gnl|mm7|chr2 (32407871-32407713) | |
| 535-685, gnl|Mm7|chr2 (32407713-32407863) | |
| 535-685, gnl|monDom2|scaffold_51 (2656866-2657024) | |
| 535-685, gnl|panTro1|chr11 (112795832-112795990) | |
| 535-685, gnl|rheMac2|chr15 (98439878-98439720) | |
| 535-685, gnl|rn3|chr3 (11422672-11422514) | |
| 535-685, gnl|tetNig1|chr12 (10058983-10058840) | |
| 535-685, gnl|xenTro1|scaffold_82 (420923-420765) | |
| 687-876, gnl|bosTau2|chr11 (77616932-77616743) | |
| 687-876, gnl|canFam2|chr9 (58691796-58691520) | |
| 687-876, gnl|danRer3|chr8 (23959933-23959716) | |
| 687-876, gnl|echTel1|scaffold_130978 (395-621) | |
| 687-876, gnl|fr1|chrUn (245193550-245193765) | |
| 687-876, gnl|galGal2|chr17 (5646414-5646653) | |
| 687-876, gnl|hg17|chr9 (127964740-127964981) | |
| 687-876, gnl|Hg17|chr9 (127964966-127964777) | |
| 687-876, gnl|loxAfr1|scaffold_8335 (67090-66833) | |
| 687-876, gnl|mm7|chr2 (32408433-32408181) | |
| 687-876, gnl|Mm7|chr2 (32408190-32408379) | |
| 687-876, gnl|monDom2|scaffold_51 (2655514-2655739) | |
| 687-876, gnl|panTro1|chr11 (112794905-112795147) | |
| 687-876, gnl|rheMac2|chr15 (98440963-98440722) | |
| 687-876, gnl|rn3|chr3 (11423227-11422972) | |
| 687-876, gnl|tetNig1|chr12 (10059307-10059082) | |
| 687-876, gnl|xenTro1|scaffold_82 (421225-420996) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |