Non-Coding RNA Search

Ss1.1-Spl1-SPL01B080080.5

Sequence:


               
               ACAGCCCACTGGCTCTGGGACCTGCATTCTCTCTCACTGCATAGCATGAGTGGGAAGTAC
AGGCATGTTTGGGGAATGATAAGCTCACGCGAGCAGAGCAAGGTGAAGGATTTTTTTCCA
GCTCAAGCTTTGCTGCCGCCGCTGCCTCCTTTCTCTTCTCGCTGCTTCCCGGCCCCTGGT
TGTGAGCCCAGGATACCTCAAGCCTTTTGTGAAGCGAACACAGGGATCCAACGGATTGTT
TGAAGACCCGAAACCCGCACAACTAAGTGCTCTGCGCTGAGTCTGATCTCGCACCTTGGA
GTGAGATGAACTACATTGATGGTGAGAAGGTAGTTAAGAGGTCGGCCACGCTTCCCCTCC
CCACACGCTCTTCCTCGCTAAAGTCAAGCCCAGAGAGAAACGACTGGGAGCCCCCCGATA
AGAAAGTGGATACAAGAAAATACCGCGCGGAGCCCAAAAGCATTTACGACTATCAGCCGG
GCAAGTCCTCCGTGCTGACCAACGAAAAGATGAGCTCAGCAGTCAGCCCCACTCCGGAAA
CTTCTTCAGAGCCTCCTGGATATATATATTCTTCCAACTTCCACGCAGTGAAGAGGGAAT
CAGATGGGGCTCCCGGGGACTTTGCTAGCTTGGAGAACGAGAGGCAGATTTATAAAAGTG
TCTTGGAAGGAGGAGACATCCCTCTCCAGGGCCTGAGCGGGCTCAAGCGGCCATCCAGCT
CGGCCTCCACGAAAGATTCAGAATCGCCAAGGCATTTTATCCCAGCTGATTACTTGGAGT
CTACAGAAGAATTTATTCGAAGACGTCATGATGATAAAGAGAAACTTTTAGCGGACCAGA
GACGACTTAAGCGAGAGCAAGAAGAGGCCGATATTGCAGCTCGACGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCCCACTGGCTCTGGGACCTGCATTCTCTCTCACTGCATAGCATGAGTGGGAAGTAC
AGGCATGTTTGGGGAATGATAAGCTCACGCGAGCAGAGCAAGGTGAAGGATTTTTTTCCA
GCTCAAGCTTTGCTGCCGCCGCTGCCTCCTTTCTCTTCTCGCTGCTTCCCGGCCCCTGGT
TGTGAGCCCAGGATACCTCAAGCCTTTTGTGAAGCGAACACAGGGATCCAACGGATTGTT
TGAAGACCCGAAACCCGCACAACTAAGTGCTCTGCGCTGAGTCTGATCTCGCACCTTGGA
GTGAGATGAACTACATTGATGGTGAGAAGGTAGTTAAGAGGTCGGCCACGCTTCCCCTCC
CCACACGCTCTTCCTCGCTAAAGTCAAGCCCAGAGAGAAACGACTGGGAGCCCCCCGATA
AGAAAGTGGATACAAGAAAATACCGCGCGGAGCCCAAAAGCATTTACGACTATCAGCCGG
GCAAGTCCTCCGTGCTGACCAACGAAAAGATGAGCTCAGCAGTCAGCCCCACTCCGGAAA
CTTCTTCAGAGCCTCCTGGATATATATATTCTTCCAACTTCCACGCAGTGAAGAGGGAAT
CAGATGGGGCTCCCGGGGACTTTGCTAGCTTGGAGAACGAGAGGCAGATTTATAAAAGTG
TCTTGGAAGGAGGAGACATCCCTCTCCAGGGCCTGAGCGGGCTCAAGCGGCCATCCAGCT
CGGCCTCCACGAAAGATTCAGAATCGCCAAGGCATTTTATCCCAGCTGATTACTTGGAGT
CTACAGAAGAATTTATTCGAAGACGTCATGATGATAAAGAGAAACTTTTAGCGGACCAGA
GACGACTTAAGCGAGAGCAAGAAGAGGCCGATATTGCAGCTCGACGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BX47_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BX47_MOUSE

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-300, gnl|bosTau2|chr26 (10831284-10831589)
               

               
               1-300, gnl|Hg17|chr10 (97131953-97131651)
               

               
               1-300, gnl|Mm7|chr19 (40244183-40243899)
               


               
               402-512, gnl|bosTau2|chr26 (10831694-10831804)
               

               
               402-512, gnl|Hg17|chr10 (97131542-97131432)
               

               
               402-512, gnl|Mm7|chr19 (40243797-40243687)
               


               
               565-735, gnl|bosTau2|chr26 (10854183-10854353)
               

               
               565-735, gnl|Hg17|chr10 (97107548-97107378)
               

               
               565-735, gnl|Mm7|chr19 (40221408-40221238)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-300, gnl|bosTau2|chr26 (10831284-10831589)
               

               
               1-300, gnl|Hg17|chr10 (97131953-97131651)
               

               
               1-300, gnl|Mm7|chr19 (40244183-40243899)
               


               
               402-512, gnl|bosTau2|chr26 (10831694-10831804)
               

               
               402-512, gnl|Hg17|chr10 (97131542-97131432)
               

               
               402-512, gnl|Mm7|chr19 (40243797-40243687)
               


               
               565-735, gnl|bosTau2|chr26 (10854183-10854353)
               

               
               565-735, gnl|Hg17|chr10 (97107548-97107378)
               

               
               565-735, gnl|Mm7|chr19 (40221408-40221238)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	1-300, gnl\|bosTau2\|chr26 (10831284-10831589)
	1-300, gnl\|Hg17\|chr10 (97131953-97131651)
	1-300, gnl\|Mm7\|chr19 (40244183-40243899)

	402-512, gnl\|bosTau2\|chr26 (10831694-10831804)
	402-512, gnl\|Hg17\|chr10 (97131542-97131432)
	402-512, gnl\|Mm7\|chr19 (40243797-40243687)

	565-735, gnl\|bosTau2\|chr26 (10854183-10854353)
	565-735, gnl\|Hg17\|chr10 (97107548-97107378)
	565-735, gnl\|Mm7\|chr19 (40221408-40221238)