Non-Coding RNA Search

Ss1.1-Spl1-SPL01B090066.5

Sequence:


               
               GCGGAGGCTGCCCGGGTGGGCGCTTGGGGAACGGGGCCGGCGGGCCTGAGGCGGCGCAGC
GGCCGGGCGGCCTCGGCCACCCGGTAAAGTCAGAGTTTCCCGGTGTCTCGTCCGCAGAGG
GAGCAGGATGTCCGCGGAAGTCCCCGAGGCAGCCTCCGCGGAGGAGCAGAAGGAAATGGA
AGATAAAGTGACTAGTCCAGAGAAAGCTGAAGAAGCAAAATTAAAAGCGAGGTATCCTCA
TCTGGGACAAAAGCCTGGAGGTTCAGATTTCTTAAGAAAACGATTGCAGAAAGGGCAAAA
ATATTTTGATTCTGGGGATTATAACATGGCTAAAGCAAAAATGAAGAACAAGCAACTTCC
TACTGCAGCCCCGGATAAGACAGAGGTCACTGGTGACCACATTCCCACTCCACAGGACCT
TCCTCAGCGGAAACCATCTCTTGTTGCTAGCAAGCTAGCTGGCTGATTAAAAGAGCTGAA
CTGCATGAATCTTCTAATTCCCATTACTTCTCCTTAATATGTTACTTCTCTGCTTTTTAT
TTCTTTTCATTCACTAAGTCATTTTAGAGTGACGGCTTTGCAGGTAGCGGTAGTGTGTGC
TACTATTGTAAAGGAATATACATGTGTAGAGTTTTGATTAGTTTAACAGTGCACTGATGA
GAAGAACATGTTAGAGCAACATAAAGTAATCTACTTGAAAATAATTGTATATATTACTTA
ACTCTTAGTGTAAGGCTGGTTCCAACAAGTAACAAGCAAGTTTTACAGTTTTAATGTTTT
GGCTTTAATTCATCTGAAGTATAGCTTTGTATGTTACTCTATTTAATATAACCTCTGTAG
TATGATTTCTTCTGTATTTTCCTTTTGGATTTTGTAAAACAGACGTTTAAGACCACAAGT
TAGAAGAAGGTCACATATTTCAAACACAAATAGATGGGGCTCCAAAAGATTTGTATCCTT
TGCTTGAACTTGAATGGCCTTAAATCTGTTACAGCTTTAACAATAGAATTTTACTTGGGC
AATATTTGCCCATTCTGGTGTAACTTACGTGATTCTCAAGCTTAACAGCTGCTGTTGAAG
CTAGCATTCTTACTCAGTTCTGTAGTGTTAGAAGACCTTTTGTTGTTGAAGATGTGAATG
AAGTGTGCATGTGCATCGACTGTTGAATTCACTTGTGTGCCATTTTTGTAAATACAATAT
TTTGCACAACCTCTCACAAATGTCTGTATTAATTTTACATATTAAAAAGTAGATGAAGGG
AGTCCTGTGGTGCAGCAGGTTAAGGATCCGACATTGTCACTGCAGTGGCTCGGGTTCAGT
TCCTGGTCTTGGAACTTCCAGCTGCCATGGGCACAGCCAAAAAAAAAAAAGTAGATGATG
TGCCAACCAGAAGCACAAGAGTTCCTACACAAAACTGTATGTCATTAGAGCTTTTGTATA
GTAAGAATAGTTTGCAATCTTTGGGTTATGGACTACCAAACTGAAATCTTTGCTCATTCT
GCCATAGACTTTAGCTTTTTGATTCATTATTAATATCCATCACATTCGGTGGCCTTGTGC
AAATACGATATGTTGCTTAAGCATATCTTTTGTCCTATGCAGAACATTTCTTTTGACCTT
TATGAAAATTACAATTCATGTAATTTATATAAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAGGCTGCCCGGGTGGGCGCTTGGGGAACGGGGCCGGCGGGCCTGAGGCGGCGCAGC
GGCCGGGCGGCCTCGGCCACCCGGTAAAGTCAGAGTTTCCCGGTGTCTCGTCCGCAGAGG
GAGCAGGATGTCCGCGGAAGTCCCCGAGGCAGCCTCCGCGGAGGAGCAGAAGGAAATGGA
AGATAAAGTGACTAGTCCAGAGAAAGCTGAAGAAGCAAAATTAAAAGCGAGGTATCCTCA
TCTGGGACAAAAGCCTGGAGGTTCAGATTTCTTAAGAAAACGATTGCAGAAAGGGCAAAA
ATATTTTGATTCTGGGGATTATAACATGGCTAAAGCAAAAATGAAGAACAAGCAACTTCC
TACTGCAGCCCCGGATAAGACAGAGGTCACTGGTGACCACATTCCCACTCCACAGGACCT
TCCTCAGCGGAAACCATCTCTTGTTGCTAGCAAGCTAGCTGGCTGATTAAAAGAGCTGAA
CTGCATGAATCTTCTAATTCCCATTACTTCTCCTTAATATGTTACTTCTCTGCTTTTTAT
TTCTTTTCATTCACTAAGTCATTTTAGAGTGACGGCTTTGCAGGTAGCGGTAGTGTGTGC
TACTATTGTAAAGGAATATACATGTGTAGAGTTTTGATTAGTTTAACAGTGCACTGATGA
GAAGAACATGTTAGAGCAACATAAAGTAATCTACTTGAAAATAATTGTATATATTACTTA
ACTCTTAGTGTAAGGCTGGTTCCAACAAGTAACAAGCAAGTTTTACAGTTTTAATGTTTT
GGCTTTAATTCATCTGAAGTATAGCTTTGTATGTTACTCTATTTAATATAACCTCTGTAG
TATGATTTCTTCTGTATTTTCCTTTTGGATTTTGTAAAACAGACGTTTAAGACCACAAGT
TAGAAGAAGGTCACATATTTCAAACACAAATAGATGGGGCTCCAAAAGATTTGTATCCTT
TGCTTGAACTTGAATGGCCTTAAATCTGTTACAGCTTTAACAATAGAATTTTACTTGGGC
AATATTTGCCCATTCTGGTGTAACTTACGTGATTCTCAAGCTTAACAGCTGCTGTTGAAG
CTAGCATTCTTACTCAGTTCTGTAGTGTTAGAAGACCTTTTGTTGTTGAAGATGTGAATG
AAGTGTGCATGTGCATCGACTGTTGAATTCACTTGTGTGCCATTTTTGTAAATACAATAT
TTTGCACAACCTCTCACAAATGTCTGTATTAATTTTACATATTAAAAAGTAGATGAAGGG
AGTCCTGTGGTGCAGCAGGTTAAGGATCCGACATTGTCACTGCAGTGGCTCGGGTTCAGT
TCCTGGTCTTGGAACTTCCAGCTGCCATGGGCACAGCCAAAAAAAAAAAAGTAGATGATG
TGCCAACCAGAAGCACAAGAGTTCCTACACAAAACTGTATGTCATTAGAGCTTTTGTATA
GTAAGAATAGTTTGCAATCTTTGGGTTATGGACTACCAAACTGAAATCTTTGCTCATTCT
GCCATAGACTTTAGCTTTTTGATTCATTATTAATATCCATCACATTCGGTGGCCTTGTGC
AAATACGATATGTTGCTTAAGCATATCTTTTGTCCTATGCAGAACATTTCTTTTGACCTT
TATGAAAATTACAATTCATGTAATTTATATAAACTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|545792|gb|AAB30131.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|545792|gb|AAB30131.1|

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               104-201, - strand, RNAz p=0.596551
               

               
               354-472, - strand, RNAz p=0.592616
               

               
               553-671, - strand, RNAz p=0.671475
               

               
               984-1097, + strand, RNAz p=0.973414

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               104-201, - strand, RNAz p=0.596551
               

               
               354-472, - strand, RNAz p=0.592616
               

               
               553-671, - strand, RNAz p=0.671475
               

               
               984-1097, + strand, RNAz p=0.973414

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               97-1254, gnl|bosTau2|chr10 (41028796-41027637)
               

               
               97-1254, gnl|Hg17|chr5 (180341846-180342990)
               

               
               97-1254, gnl|Mm7|chr9 (75090292-75095429)
               


               
               1366-1654, gnl|bosTau2|chr10 (41027647-41027357)
               

               
               1366-1654, gnl|Hg17|chr5 (180342980-180343270)
               

               
               1366-1654, gnl|Mm7|chr9 (75095419-75095706)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-1254, gnl|bosTau2|chr10 (41028796-41027637)
               

               
               97-1254, gnl|Hg17|chr5 (180341846-180342990)
               

               
               97-1254, gnl|Mm7|chr9 (75090292-75095429)
               


               
               1366-1654, gnl|bosTau2|chr10 (41027647-41027357)
               

               
               1366-1654, gnl|Hg17|chr5 (180342980-180343270)
               

               
               1366-1654, gnl|Mm7|chr9 (75095419-75095706)

Expressed library(ies): 56 entry(ies)

More info

Expressed library(ies): 56 entry(ies)

Help | Less info


               
               cbr (2.43153)
               

               
               fco (2.0437)
               

               
               cte (1.4637)
               

               
               vin (1.33023)
               

               
               tbr (0.925069)
               

               
               ret (0.901133)
               

               
               bfe (0.899146)
               

               
               isp (0.601504)
               

               
               liv (0.585137)
               

               
               gul (0.532765)
               

               
               thg (0.507164)
               

               
               spc (0.453463)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               tes (0.415628)
               

               
               kid (0.389206)
               

               
               ova (0.387397)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               duo (0.345602)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               nmm (0.265604)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 56 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (2.43153)
               

               
               fco (2.0437)
               

               
               cte (1.4637)
               

               
               vin (1.33023)
               

               
               tbr (0.925069)
               

               
               ret (0.901133)
               

               
               bfe (0.899146)
               

               
               isp (0.601504)
               

               
               liv (0.585137)
               

               
               gul (0.532765)
               

               
               thg (0.507164)
               

               
               spc (0.453463)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               tes (0.415628)
               

               
               kid (0.389206)
               

               
               ova (0.387397)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               duo (0.345602)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               nmm (0.265604)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	104-201, - strand, RNAz p=0.596551
	354-472, - strand, RNAz p=0.592616
	553-671, - strand, RNAz p=0.671475
	984-1097, + strand, RNAz p=0.973414

	97-1254, gnl\|bosTau2\|chr10 (41028796-41027637)
	97-1254, gnl\|Hg17\|chr5 (180341846-180342990)
	97-1254, gnl\|Mm7\|chr9 (75090292-75095429)

	1366-1654, gnl\|bosTau2\|chr10 (41027647-41027357)
	1366-1654, gnl\|Hg17\|chr5 (180342980-180343270)
	1366-1654, gnl\|Mm7\|chr9 (75095419-75095706)

	cbr (2.43153)
	fco (2.0437)
	cte (1.4637)
	vin (1.33023)
	tbr (0.925069)
	ret (0.901133)
	bfe (0.899146)
	isp (0.601504)
	liv (0.585137)
	gul (0.532765)
	thg (0.507164)
	spc (0.453463)
	amn (0.417711)
	cty (0.41632)
	tes (0.415628)
	kid (0.389206)
	ova (0.387397)
	elu (0.385356)
	sug (0.381874)
	duo (0.345602)
	sme (0.305437)
	ski (0.29347)
	spl (0.286369)
	hyp (0.285673)
	ssp (0.271039)
	ste (0.270416)
	lyg (0.266205)
	nmm (0.265604)
	bla (0.248694)
	tra (0.246184)
	clu (0.239292)
	cbe (0.239234)
	pgl (0.236967)
	med (0.232504)
	mgp (0.230681)
	ece (0.229305)
	hea (0.204499)
	fcc (0.197785)
	aor (0.195274)
	sag (0.182715)
	ill (0.175593)
	fbs (0.175346)
	rec (0.17307)
	eye (0.170503)
	nje (0.16592)
	mga (0.160205)
	eli (0.151814)
	lin (0.145603)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)
	cbl (0.114797)
	jca (0.11396)
	nbm (0.0993246)
	ldo (0.0970026)