Ss1.1-Spl1-SPL01B090076.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGCGACCGCGTCCCCTCGGGTCCTTGAGCCGGTGCAGACCGCGGAGCCATGGCCTTGA GGCTGCTGAGACTGGCCCCCGCGTCCGCGTCCGCGGTCCCGCGGGGCCTCGGGGCGGTCG CCCAGCGCGTGGGCGGAATCCACACGGGCGCCCCGTGCAGGCTGCAGTATGGCCCTCTGG CCTTCATCCTTGGGGAAAGAACGACCAGGAAGCTGACGGAAACCAGCAAAGTGATAACTG TGGACGGCAACATATGTTCCGGAAAGGGCAGGCTGGCGAGAGAAATAGCCGAGAAGCTAG GCCTGAGGCACTTCCCCGAGGCCGGGATCCACTACGCCGACAGCACCACCGGCGACGGGA AGCCCCTGGACGTACAGCTCAGCGGCAACTGCAGTTTGGAGAAGTTCTATGACGACCCGA AAAGTAACGACGGCAACAGCTACCGCCTGCAGTCCTGGCTGTACGCCAGCCGCCTCCTGC AGTACGCGGACGCCCTGGAGCACCTGCTGAGCACAGGACAAGGCGTGGTGCTGGAGCGCT CCATCTACAGTGACTTTGTGTTCTTGGAGGCCATGTACAGACAGGGCTTCATCCGGAAGC AGTGCGTGGAGCACTACAACGAGGTGAAGAAGGTCACCGCCTGCGAGTACCTGCCCCCGC ACGTGGTCGTCTACGTGGACGTGCCCGTCCCCGAGATCCAGAGCCGCATCCAGAAGAAGG GCAACCCGCACGAGATGAAGATCACCGCCGCCTACCTGCAGGACATCGAGAACGCCTACA AGAAGACCTTCCTGCCCGAGATGAGCGAAAAATGTGAGGTGTTACAGTACAGTGCGAGGG AAGCCGAAGATGCAGAAAAGGTGGTCGAGGACATCGAGTACCTGAAGTGCGACAAGGGCC CGTGGCCGGACCAGGACGACCGCACCTTCCACAGGCTGAGGATGCTGGTTCAGAATAAGC TGGAGGTGCTGAATTACACGACCATTCCCGTCTATCTCCCGGAAATCACCATCGGGGCGC ACCAGAGCGACCGGGTCTTCCAGAAATTCACAGAGCTGCCAGGCCGCAAGTACAGCCCGG GCTACAACGAGGACGTGGGGGACAAGTGGATCTGGCTGAAGTGACCGGTGCCTCCGACCC AGCTGCCCGAGGACGACGCTGCCCCCCGGCCACCCCGCTCCCCTGGGCTCCCTCTGGCTT AGAAGCAGCGGGGTGGGGGCAGAGCACGCGGTGCGGGGGGCGCCTTCTGGCCTTGTGGGG GCGCTCAGTGCTTGGCTCGGGGGAAGAGTCGCCCCGGAGAGCGAGTGTCACGGGAGCGTT GCATTTCTGCACAGCGCGCGCCACCCGCGGCAGGCAGACTTGGGCGGGCTTTCTTCAGAC GTCGAGAAATAAAACCGTTCCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGCGACCGCGTCCCCTCGGGTCCTTGAGCCGGTGCAGACCGCGGAGCCATGGCCTTGA GGCTGCTGAGACTGGCCCCCGCGTCCGCGTCCGCGGTCCCGCGGGGCCTCGGGGCGGTCG CCCAGCGCGTGGGCGGAATCCACACGGGCGCCCCGTGCAGGCTGCAGTATGGCCCTCTGG CCTTCATCCTTGGGGAAAGAACGACCAGGAAGCTGACGGAAACCAGCAAAGTGATAACTG TGGACGGCAACATATGTTCCGGAAAGGGCAGGCTGGCGAGAGAAATAGCCGAGAAGCTAG GCCTGAGGCACTTCCCCGAGGCCGGGATCCACTACGCCGACAGCACCACCGGCGACGGGA AGCCCCTGGACGTACAGCTCAGCGGCAACTGCAGTTTGGAGAAGTTCTATGACGACCCGA AAAGTAACGACGGCAACAGCTACCGCCTGCAGTCCTGGCTGTACGCCAGCCGCCTCCTGC AGTACGCGGACGCCCTGGAGCACCTGCTGAGCACAGGACAAGGCGTGGTGCTGGAGCGCT CCATCTACAGTGACTTTGTGTTCTTGGAGGCCATGTACAGACAGGGCTTCATCCGGAAGC AGTGCGTGGAGCACTACAACGAGGTGAAGAAGGTCACCGCCTGCGAGTACCTGCCCCCGC ACGTGGTCGTCTACGTGGACGTGCCCGTCCCCGAGATCCAGAGCCGCATCCAGAAGAAGG GCAACCCGCACGAGATGAAGATCACCGCCGCCTACCTGCAGGACATCGAGAACGCCTACA AGAAGACCTTCCTGCCCGAGATGAGCGAAAAATGTGAGGTGTTACAGTACAGTGCGAGGG AAGCCGAAGATGCAGAAAAGGTGGTCGAGGACATCGAGTACCTGAAGTGCGACAAGGGCC CGTGGCCGGACCAGGACGACCGCACCTTCCACAGGCTGAGGATGCTGGTTCAGAATAAGC TGGAGGTGCTGAATTACACGACCATTCCCGTCTATCTCCCGGAAATCACCATCGGGGCGC ACCAGAGCGACCGGGTCTTCCAGAAATTCACAGAGCTGCCAGGCCGCAAGTACAGCCCGG GCTACAACGAGGACGTGGGGGACAAGTGGATCTGGCTGAAGTGACCGGTGCCTCCGACCC AGCTGCCCGAGGACGACGCTGCCCCCCGGCCACCCCGCTCCCCTGGGCTCCCTCTGGCTT AGAAGCAGCGGGGTGGGGGCAGAGCACGCGGTGCGGGGGGCGCCTTCTGGCCTTGTGGGG GCGCTCAGTGCTTGGCTCGGGGGAAGAGTCGCCCCGGAGAGCGAGTGTCACGGGAGCGTT GCATTTCTGCACAGCGCGCGCCACCCGCGGCAGGCAGACTTGGGCGGGCTTTCTTCAGAC GTCGAGAAATAAAACCGTTCCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 299-517, gnl|bosTau2|chr3 (85247799-85248017) | |
| 299-517, gnl|canFam2|chr25 (52988122-52988267) | |
| 299-517, gnl|danRer3|chr16 (20250510-20250361) | |
| 299-517, gnl|dasNov1|scaffold_213491 (44-187) | |
| 299-517, gnl|fr1|chrUn (225013488-225013343) | |
| 299-517, gnl|galGal2|chr7 (6458540-6458684) | |
| 299-517, gnl|hg17|chr2 (240680601-240680746) | |
| 299-517, gnl|Hg17|chr2 (240680821-240680603) | |
| 299-517, gnl|loxAfr1|scaffold_1337 (46018-46159) | |
| 299-517, gnl|mm7|chr1 (92377669-92377814) | |
| 299-517, gnl|Mm7|chr1 (92377889-92377671) | |
| 299-517, gnl|monDom2|scaffold_190 (438907-439050) | |
| 299-517, gnl|panTro1|chr13 (131743530-131743675) | |
| 299-517, gnl|rheMac2|chr12 (103923946-103924091) | |
| 299-517, gnl|rn3|chr9 (91890785-91890930) | |
| 299-517, gnl|tetNig1|chr2 (17262664-17262519) | |
| 299-517, gnl|xenTro1|scaffold_49 (2973564-2973707) | |
| 606-725, gnl|bosTau2|chr3 (85250402-85250521) | |
| 606-725, gnl|canFam2|chr25 (52982383-52982536) | |
| 606-725, gnl|danRer3|chr16 (20250993-20250859) | |
| 606-725, gnl|echTel1|scaffold_114639 (245-385) | |
| 606-725, gnl|fr1|chrUn (225013883-225013739) | |
| 606-725, gnl|galGal2|chr7 (6455534-6455679) | |
| 606-725, gnl|hg17|chr2 (240674133-240674285) | |
| 606-725, gnl|Hg17|chr2 (240674265-240674146) | |
| 606-725, gnl|loxAfr1|scaffold_1337 (45830-45927) | |
| 606-725, gnl|mm7|chr1 (92372159-92372304) | |
| 606-725, gnl|Mm7|chr1 (92372289-92372170) | |
| 606-725, gnl|monDom2|scaffold_190 (435585-435731) | |
| 606-725, gnl|oryCun1|scaffold_139748 (4731-4581) | |
| 606-725, gnl|panTro1|chr13_random (35115651-35115499) | |
| 606-725, gnl|rheMac2|chr12 (103917552-103917704) | |
| 606-725, gnl|rn3|chr9 (91885058-91885203) | |
| 606-725, gnl|tetNig1|chr2 (17263115-17262981) | |
| 606-725, gnl|xenTro1|scaffold_49 (2971979-2972106) | |
| 1051-1405, gnl|bosTau2|chr3 (85276835-85277179) | |
| 1051-1405, gnl|Hg17|chr2 (240620598-240620150) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 299-517, gnl|bosTau2|chr3 (85247799-85248017) | |
| 299-517, gnl|canFam2|chr25 (52988122-52988267) | |
| 299-517, gnl|danRer3|chr16 (20250510-20250361) | |
| 299-517, gnl|dasNov1|scaffold_213491 (44-187) | |
| 299-517, gnl|fr1|chrUn (225013488-225013343) | |
| 299-517, gnl|galGal2|chr7 (6458540-6458684) | |
| 299-517, gnl|hg17|chr2 (240680601-240680746) | |
| 299-517, gnl|Hg17|chr2 (240680821-240680603) | |
| 299-517, gnl|loxAfr1|scaffold_1337 (46018-46159) | |
| 299-517, gnl|mm7|chr1 (92377669-92377814) | |
| 299-517, gnl|Mm7|chr1 (92377889-92377671) | |
| 299-517, gnl|monDom2|scaffold_190 (438907-439050) | |
| 299-517, gnl|panTro1|chr13 (131743530-131743675) | |
| 299-517, gnl|rheMac2|chr12 (103923946-103924091) | |
| 299-517, gnl|rn3|chr9 (91890785-91890930) | |
| 299-517, gnl|tetNig1|chr2 (17262664-17262519) | |
| 299-517, gnl|xenTro1|scaffold_49 (2973564-2973707) | |
| 606-725, gnl|bosTau2|chr3 (85250402-85250521) | |
| 606-725, gnl|canFam2|chr25 (52982383-52982536) | |
| 606-725, gnl|danRer3|chr16 (20250993-20250859) | |
| 606-725, gnl|echTel1|scaffold_114639 (245-385) | |
| 606-725, gnl|fr1|chrUn (225013883-225013739) | |
| 606-725, gnl|galGal2|chr7 (6455534-6455679) | |
| 606-725, gnl|hg17|chr2 (240674133-240674285) | |
| 606-725, gnl|Hg17|chr2 (240674265-240674146) | |
| 606-725, gnl|loxAfr1|scaffold_1337 (45830-45927) | |
| 606-725, gnl|mm7|chr1 (92372159-92372304) | |
| 606-725, gnl|Mm7|chr1 (92372289-92372170) | |
| 606-725, gnl|monDom2|scaffold_190 (435585-435731) | |
| 606-725, gnl|oryCun1|scaffold_139748 (4731-4581) | |
| 606-725, gnl|panTro1|chr13_random (35115651-35115499) | |
| 606-725, gnl|rheMac2|chr12 (103917552-103917704) | |
| 606-725, gnl|rn3|chr9 (91885058-91885203) | |
| 606-725, gnl|tetNig1|chr2 (17263115-17262981) | |
| 606-725, gnl|xenTro1|scaffold_49 (2971979-2972106) | |
| 1051-1405, gnl|bosTau2|chr3 (85276835-85277179) | |
| 1051-1405, gnl|Hg17|chr2 (240620598-240620150) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| nms (0.427716) | |
| fce (0.271592) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.427716) | |
| fce (0.271592) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |