Ss1.1-Spl1-SPL01B100058.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGATTTCGGGTCCTGGCACCCTGGGTGGATGCCCAAAGACTCCGCCTTCCCAGGAGCCC CTGCGGCAGGGCGCGAAGATGGCGGCGGCGGCGGCCGGACGCCTCTAAAGCAGCAGCTAT GGAGCCTTCCCCCGCACCGGGGCCGGAGCGGCTCTTTGACTCGCACCGGCTCCCGGGTGA CGGCTTCCTGCTCCTCGCGCTGCTCCTCTACGCTCCAGTCGGGTTCTGCCTCCTCGTCCT GCGCCTCTTTCTTGGGATCCACGTCTTCTTGGTCAGCTGCGCGCTCCCAGACAGTGTCCT TCGCAGGTTCGTGGTGCGGACCATGTGTGCAGTACTGGGGCTCGTGGCCCGGCAGGAGGA TTCCGGACTCCGGGATCACCGTGTCAGGGTCCTCATTTCCAACCACGTGACACCTTTTGA CCACAACATAGTCAACCTGCTCACCAGCTGTAGCACCCCTCTACTCAATAGTCCCCCCAG CTTTGTGTGCTGGTCTCGGGGCTTCATGGAGATGGATGGGCGAGGGGAGTTGGTGGAGTC ACTCAAGAGATTCTGTGCTTCCACGAGGCTTCCCCCCACTCCTCTGCTGCTATTCCCCGA GGAAGAGGCCACCAATGGCCGGGAGGGGCTCCTGCGCTTCAGTTCCTGGCCATTTTCTAT CCAGGATGTGGTACAGCCTCTCACCCTGAGAGTCCAGAGACCCCTCGTCTCTGTGACGGT GTCAGACGCCTCCTGGGTCTCAGAACTGCTGTGGTCACTTTTCGTCCCTTTCACAGTGTA TCAAGTAAGGTGGCTCCGTCCTGTTCATCGCCAGCTGGGGGAGGGGAATGAGGAGTTTGC CCTCCGTGTGCAACAGCTGTTGGCCAAAGAATTGGGCCAGACGGGGACACGACTCACTCC AGCAGACAAAGCAGAGCACATGAAGCGACAGAGACACCCCAGATTGCGCCCCCAGTCAGC CCAGTCTTCCTTCCCTCCCTCCCCGGGCCCTTCTGAAGCACAGCTGGCAACTCTGGCTCA GAGAGTCAAGGAGGTTTTGCCCCATGTGCCACTGGGCGTCATCCAGAGAGACCTGGCCAG GACTGGCTGTGTAGACTTGACCATCACTAATCTGCTTGAGGGAGCCGTAGCTTTCATGCC TGAAGACATCACTGAGGGGACACAGCCCCTTCCCACAGCCTCCACCCCCAAGTTCCCCAG CTCTGGCCCGGCGACTCCTCAGCCCACAGCCCTAACATTTGCCAAGTCCTCCTGGGCCCG GCAGGAGAGTCTACAGGAGCGCAAGCAGGCGCTGTATGAATACGCAAGAAGGAGATTCAC AGAGAAGCAGGCCCAGGAGGCTGACTGAGTACAGGATGGCACCCAGAGCCGCAGGACGGA GACTGGGGGCAGCCCTCACCCAACTCACTACAGGCCGGAGGGGTGGGTGGTAAAAGGGGA GGGATGGGGCTCCCCCCAATATCTCATTAAATTCAGGGTTTTCACTCAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGATTTCGGGTCCTGGCACCCTGGGTGGATGCCCAAAGACTCCGCCTTCCCAGGAGCCC CTGCGGCAGGGCGCGAAGATGGCGGCGGCGGCGGCCGGACGCCTCTAAAGCAGCAGCTAT GGAGCCTTCCCCCGCACCGGGGCCGGAGCGGCTCTTTGACTCGCACCGGCTCCCGGGTGA CGGCTTCCTGCTCCTCGCGCTGCTCCTCTACGCTCCAGTCGGGTTCTGCCTCCTCGTCCT GCGCCTCTTTCTTGGGATCCACGTCTTCTTGGTCAGCTGCGCGCTCCCAGACAGTGTCCT TCGCAGGTTCGTGGTGCGGACCATGTGTGCAGTACTGGGGCTCGTGGCCCGGCAGGAGGA TTCCGGACTCCGGGATCACCGTGTCAGGGTCCTCATTTCCAACCACGTGACACCTTTTGA CCACAACATAGTCAACCTGCTCACCAGCTGTAGCACCCCTCTACTCAATAGTCCCCCCAG CTTTGTGTGCTGGTCTCGGGGCTTCATGGAGATGGATGGGCGAGGGGAGTTGGTGGAGTC ACTCAAGAGATTCTGTGCTTCCACGAGGCTTCCCCCCACTCCTCTGCTGCTATTCCCCGA GGAAGAGGCCACCAATGGCCGGGAGGGGCTCCTGCGCTTCAGTTCCTGGCCATTTTCTAT CCAGGATGTGGTACAGCCTCTCACCCTGAGAGTCCAGAGACCCCTCGTCTCTGTGACGGT GTCAGACGCCTCCTGGGTCTCAGAACTGCTGTGGTCACTTTTCGTCCCTTTCACAGTGTA TCAAGTAAGGTGGCTCCGTCCTGTTCATCGCCAGCTGGGGGAGGGGAATGAGGAGTTTGC CCTCCGTGTGCAACAGCTGTTGGCCAAAGAATTGGGCCAGACGGGGACACGACTCACTCC AGCAGACAAAGCAGAGCACATGAAGCGACAGAGACACCCCAGATTGCGCCCCCAGTCAGC CCAGTCTTCCTTCCCTCCCTCCCCGGGCCCTTCTGAAGCACAGCTGGCAACTCTGGCTCA GAGAGTCAAGGAGGTTTTGCCCCATGTGCCACTGGGCGTCATCCAGAGAGACCTGGCCAG GACTGGCTGTGTAGACTTGACCATCACTAATCTGCTTGAGGGAGCCGTAGCTTTCATGCC TGAAGACATCACTGAGGGGACACAGCCCCTTCCCACAGCCTCCACCCCCAAGTTCCCCAG CTCTGGCCCGGCGACTCCTCAGCCCACAGCCCTAACATTTGCCAAGTCCTCCTGGGCCCG GCAGGAGAGTCTACAGGAGCGCAAGCAGGCGCTGTATGAATACGCAAGAAGGAGATTCAC AGAGAAGCAGGCCCAGGAGGCTGACTGAGTACAGGATGGCACCCAGAGCCGCAGGACGGA GACTGGGGGCAGCCCTCACCCAACTCACTACAGGCCGGAGGGGTGGGTGGTAAAAGGGGA GGGATGGGGCTCCCCCCAATATCTCATTAAATTCAGGGTTTTCACTCAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 458-1489, + strand, RNAz p=0.854109 | |
| 1345-1489, - strand, RNAz p=0.781505 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 458-1489, + strand, RNAz p=0.854109 | |
| 1345-1489, - strand, RNAz p=0.781505 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 1-169, gnl|bosTau2|chr11 (7760868-7761033) | |
| 1-169, gnl|Hg17|chr2 (74668532-74668361) | |
| 1-169, gnl|Mm7|chr6 (83080102-83080267) | |
| 300-457, gnl|bosTau2|chr11 (7761323-7761480) | |
| 300-457, gnl|canFam2|chr17 (51683463-51683284) | |
| 300-457, gnl|danRer3|chr14 (1274943-1274769) | |
| 300-457, gnl|dasNov1|scaffold_54875 (4763-4582) | |
| 300-457, gnl|echTel1|scaffold_295249 (9857-9678) | |
| 300-457, gnl|fr1|chrUn (129804936-129805109) | |
| 300-457, gnl|galGal2|chrUn (122301209-122301381) | |
| 300-457, gnl|hg17|chr2 (74667902-74668080) | |
| 300-457, gnl|Hg17|chr2 (74668071-74667914) | |
| 300-457, gnl|loxAfr1|scaffold_8565 (17464-17643) | |
| 300-457, gnl|mm7|chr6 (83080728-83080549) | |
| 300-457, gnl|Mm7|chr6 (83080556-83080713) | |
| 300-457, gnl|monDom2|scaffold_10 (48134852-48134672) | |
| 300-457, gnl|oryCun1|scaffold_128785 (5093-4914) | |
| 300-457, gnl|panTro1|chr12 (77072314-77072492) | |
| 300-457, gnl|rheMac2|chr13 (74759458-74759636) | |
| 300-457, gnl|rn3|chr4 (117510685-117510506) | |
| 300-457, gnl|tetNig1|chr1 (9526063-9526234) | |
| 458-642, gnl|bosTau2|chr11 (7761680-7761864) | |
| 458-642, gnl|Hg17|chr2 (74667717-74667533) | |
| 458-642, gnl|Mm7|chr6 (83080940-83081124) | |
| 855-959, gnl|bosTau2|chr11 (7762743-7762847) | |
| 855-959, gnl|Hg17|chr2 (74666622-74666518) | |
| 855-959, gnl|Mm7|chr6 (83081974-83082078) | |
| 1076-1192, gnl|bosTau2|chr11 (7763213-7763329) | |
| 1076-1192, gnl|canFam2|chr17 (51685334-51685250) | |
| 1076-1192, gnl|dasNov1|scaffold_54875 (6589-6505) | |
| 1076-1192, gnl|echTel1|scaffold_295249 (11651-11567) | |
| 1076-1192, gnl|fr1|chrUn (129802281-129802383) | |
| 1076-1192, gnl|galGal2|chrUn (122294567-122294630) | |
| 1076-1192, gnl|hg17|chr2 (74666019-74666103) | |
| 1076-1192, gnl|Hg17|chr2 (74666146-74666030) | |
| 1076-1192, gnl|loxAfr1|scaffold_8565 (15671-15726) | |
| 1076-1192, gnl|mm7|chr6 (83082539-83082456) | |
| 1076-1192, gnl|Mm7|chr6 (83082411-83082527) | |
| 1076-1192, gnl|monDom2|scaffold_10 (48136756-48136654) | |
| 1076-1192, gnl|oryCun1|scaffold_128785 (7018-6934) | |
| 1076-1192, gnl|panTro1|chr12 (77070424-77070508) | |
| 1076-1192, gnl|rheMac2|chr13 (74757582-74757666) | |
| 1076-1192, gnl|rn3|chr4 (117512545-117512461) | |
| 1310-1489, gnl|bosTau2|chr11 (7763725-7763899) | |
| 1310-1489, gnl|canFam2|chr17 (51685989-51685653) | |
| 1310-1489, gnl|dasNov1|scaffold_54875 (7240-6909) | |
| 1310-1489, gnl|echTel1|scaffold_295249 (12307-11974) | |
| 1310-1489, gnl|hg17|chr2 (74665359-74665697) | |
| 1310-1489, gnl|Hg17|chr2 (74665620-74665434) | |
| 1310-1489, gnl|loxAfr1|scaffold_8565 (14912-15244) | |
| 1310-1489, gnl|mm7|chr6 (83083177-83082856) | |
| 1310-1489, gnl|Mm7|chr6 (83082930-83083116) | |
| 1310-1489, gnl|monDom2|scaffold_10 (48137382-48137044) | |
| 1310-1489, gnl|oryCun1|scaffold_128785 (7657-7330) | |
| 1310-1489, gnl|panTro1|chr12 (77069764-77070102) | |
| 1310-1489, gnl|rheMac2|chr13 (74756923-74757260) | |
| 1310-1489, gnl|rn3|chr4 (117513180-117512860) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-169, gnl|bosTau2|chr11 (7760868-7761033) | |
| 1-169, gnl|Hg17|chr2 (74668532-74668361) | |
| 1-169, gnl|Mm7|chr6 (83080102-83080267) | |
| 300-457, gnl|bosTau2|chr11 (7761323-7761480) | |
| 300-457, gnl|canFam2|chr17 (51683463-51683284) | |
| 300-457, gnl|danRer3|chr14 (1274943-1274769) | |
| 300-457, gnl|dasNov1|scaffold_54875 (4763-4582) | |
| 300-457, gnl|echTel1|scaffold_295249 (9857-9678) | |
| 300-457, gnl|fr1|chrUn (129804936-129805109) | |
| 300-457, gnl|galGal2|chrUn (122301209-122301381) | |
| 300-457, gnl|hg17|chr2 (74667902-74668080) | |
| 300-457, gnl|Hg17|chr2 (74668071-74667914) | |
| 300-457, gnl|loxAfr1|scaffold_8565 (17464-17643) | |
| 300-457, gnl|mm7|chr6 (83080728-83080549) | |
| 300-457, gnl|Mm7|chr6 (83080556-83080713) | |
| 300-457, gnl|monDom2|scaffold_10 (48134852-48134672) | |
| 300-457, gnl|oryCun1|scaffold_128785 (5093-4914) | |
| 300-457, gnl|panTro1|chr12 (77072314-77072492) | |
| 300-457, gnl|rheMac2|chr13 (74759458-74759636) | |
| 300-457, gnl|rn3|chr4 (117510685-117510506) | |
| 300-457, gnl|tetNig1|chr1 (9526063-9526234) | |
| 458-642, gnl|bosTau2|chr11 (7761680-7761864) | |
| 458-642, gnl|Hg17|chr2 (74667717-74667533) | |
| 458-642, gnl|Mm7|chr6 (83080940-83081124) | |
| 855-959, gnl|bosTau2|chr11 (7762743-7762847) | |
| 855-959, gnl|Hg17|chr2 (74666622-74666518) | |
| 855-959, gnl|Mm7|chr6 (83081974-83082078) | |
| 1076-1192, gnl|bosTau2|chr11 (7763213-7763329) | |
| 1076-1192, gnl|canFam2|chr17 (51685334-51685250) | |
| 1076-1192, gnl|dasNov1|scaffold_54875 (6589-6505) | |
| 1076-1192, gnl|echTel1|scaffold_295249 (11651-11567) | |
| 1076-1192, gnl|fr1|chrUn (129802281-129802383) | |
| 1076-1192, gnl|galGal2|chrUn (122294567-122294630) | |
| 1076-1192, gnl|hg17|chr2 (74666019-74666103) | |
| 1076-1192, gnl|Hg17|chr2 (74666146-74666030) | |
| 1076-1192, gnl|loxAfr1|scaffold_8565 (15671-15726) | |
| 1076-1192, gnl|mm7|chr6 (83082539-83082456) | |
| 1076-1192, gnl|Mm7|chr6 (83082411-83082527) | |
| 1076-1192, gnl|monDom2|scaffold_10 (48136756-48136654) | |
| 1076-1192, gnl|oryCun1|scaffold_128785 (7018-6934) | |
| 1076-1192, gnl|panTro1|chr12 (77070424-77070508) | |
| 1076-1192, gnl|rheMac2|chr13 (74757582-74757666) | |
| 1076-1192, gnl|rn3|chr4 (117512545-117512461) | |
| 1310-1489, gnl|bosTau2|chr11 (7763725-7763899) | |
| 1310-1489, gnl|canFam2|chr17 (51685989-51685653) | |
| 1310-1489, gnl|dasNov1|scaffold_54875 (7240-6909) | |
| 1310-1489, gnl|echTel1|scaffold_295249 (12307-11974) | |
| 1310-1489, gnl|hg17|chr2 (74665359-74665697) | |
| 1310-1489, gnl|Hg17|chr2 (74665620-74665434) | |
| 1310-1489, gnl|loxAfr1|scaffold_8565 (14912-15244) | |
| 1310-1489, gnl|mm7|chr6 (83083177-83082856) | |
| 1310-1489, gnl|Mm7|chr6 (83082930-83083116) | |
| 1310-1489, gnl|monDom2|scaffold_10 (48137382-48137044) | |
| 1310-1489, gnl|oryCun1|scaffold_128785 (7657-7330) | |
| 1310-1489, gnl|panTro1|chr12 (77069764-77070102) | |
| 1310-1489, gnl|rheMac2|chr13 (74756923-74757260) | |
| 1310-1489, gnl|rn3|chr4 (117513180-117512860) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| cty (0.41632) | |
| fty (0.351679) | |
| fhi (0.339155) | |
| cag (0.302389) | |
| jej (0.296765) | |
| ebs (0.236602) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| nbm (0.0993246) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.41632) | |
| fty (0.351679) | |
| fhi (0.339155) | |
| cag (0.302389) | |
| jej (0.296765) | |
| ebs (0.236602) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nje (0.16592) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| nbm (0.0993246) |