Ss1.1-Spl1-SPL01B100062.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGAAGTCCAGGCATGCGGCCAGCTCTGCAGTGGGCGCTTGAGGAGGGCAGTGGCCCTG CCGCCAGCCATCCGTCTGCACACCTACCTGGCTGCCTGGTTGACTGCTGTTTGTCGGGAA ACCTCTGTCAGTCCATCTGTCTGTAATCCTGACTGTCCAGTTGTCTGTCTGACCCTCCTT CTCTGTCCTCCGTCCAGCCATCTGGGCTGTCAGTCCATTTGTCTGTTTGTCTGTGGCCCC CGTCTATTTGTCCATTTGTCCAATCATCTGTGAGTCTATCTGCTCATCTTCTTGCCCCTT CATCCACCCGCCTCTGTGCATCTCTCTGTCCACTGGCCTGTGTGTCCCTGCCTCTCCTCT CCCTGCTGGGCCAGAGGAGACATGGCCAAGGGCCGTGGGACCACGGTCAGCATGGCCCTG CTGGGGCTGGGGATGGTGCTGGCCATCATTGTGCCCGCCGTGGTCCTGTCTCGGCAACGC ATCCACTGTGGCCCCAAGGCCTTTGCCCACGCTGCGGTTGCTGCAGACTCCAAGATCTGC TCGGACATTGGACGAGCTATCCTCCAGAAACACGGTTCACCTGTGGATGCCACCATCGCG GCTCTGGTCTGCACTGGGGTTGTCAACCCCCAGAGCATGGGCCTGGGTGGAGGAGTCATC TTCACTATCTACAACGCGACCACAGGGAGGGTCGACGTCATCAACGCCAGGGAGAGAGTG CCCGCCAGCCACGTTGCGGGTCTGCTGGACCAGTGTGAGCAGGCCCAGCCTCTGGGCACA GGCGCCCAGTGGATCGGGGTGCCTGGGGAGCTCCGTGGCTACGCCGAGGCCCACCGCCGC CACGGCCGCCTGCCCTGGGCGCAGCTGTTCCAGCCCACCATTGAGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGAAGTCCAGGCATGCGGCCAGCTCTGCAGTGGGCGCTTGAGGAGGGCAGTGGCCCTG CCGCCAGCCATCCGTCTGCACACCTACCTGGCTGCCTGGTTGACTGCTGTTTGTCGGGAA ACCTCTGTCAGTCCATCTGTCTGTAATCCTGACTGTCCAGTTGTCTGTCTGACCCTCCTT CTCTGTCCTCCGTCCAGCCATCTGGGCTGTCAGTCCATTTGTCTGTTTGTCTGTGGCCCC CGTCTATTTGTCCATTTGTCCAATCATCTGTGAGTCTATCTGCTCATCTTCTTGCCCCTT CATCCACCCGCCTCTGTGCATCTCTCTGTCCACTGGCCTGTGTGTCCCTGCCTCTCCTCT CCCTGCTGGGCCAGAGGAGACATGGCCAAGGGCCGTGGGACCACGGTCAGCATGGCCCTG CTGGGGCTGGGGATGGTGCTGGCCATCATTGTGCCCGCCGTGGTCCTGTCTCGGCAACGC ATCCACTGTGGCCCCAAGGCCTTTGCCCACGCTGCGGTTGCTGCAGACTCCAAGATCTGC TCGGACATTGGACGAGCTATCCTCCAGAAACACGGTTCACCTGTGGATGCCACCATCGCG GCTCTGGTCTGCACTGGGGTTGTCAACCCCCAGAGCATGGGCCTGGGTGGAGGAGTCATC TTCACTATCTACAACGCGACCACAGGGAGGGTCGACGTCATCAACGCCAGGGAGAGAGTG CCCGCCAGCCACGTTGCGGGTCTGCTGGACCAGTGTGAGCAGGCCCAGCCTCTGGGCACA GGCGCCCAGTGGATCGGGGTGCCTGGGGAGCTCCGTGGCTACGCCGAGGCCCACCGCCGC CACGGCCGCCTGCCCTGGGCGCAGCTGTTCCAGCCCACCATTGAGCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 295-486, - strand, RNAz p=0.999044 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 295-486, - strand, RNAz p=0.999044 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 1-554, gnl|bosTau2|chr17 (44721010-44720475) | |
| 1-554, gnl|canFam2|chr26 (31383196-31382552) | |
| 1-554, gnl|canFam2|chr26 (31383196-31382552) | |
| 1-554, gnl|hg17|chr13_random (77604-78282) | |
| 1-554, gnl|hg17|chr22 (17131225-17131896) | |
| 1-554, gnl|Hg17|chr22 (23353410-23353964) | |
| 1-554, gnl|mm7|chr10 (75245588-75244955) | |
| 1-554, gnl|mm7|chr10 (75245588-75244955) | |
| 1-554, gnl|Mm7|chr10 (75245010-75245533) | |
| 1-554, gnl|oryCun1|scaffold_62430 (732-1359) | |
| 1-554, gnl|oryCun1|scaffold_62430 (732-1359) | |
| 1-554, gnl|panTro1|chr23 (23018859-23019520) | |
| 1-554, gnl|panTro1|chr23 (23018859-23019520) | |
| 1-554, gnl|rheMac2|chr10 (68043817-68043161) | |
| 1-554, gnl|rheMac2|chr10 (68043817-68043161) | |
| 779-888, gnl|bosTau2|chr17 (44716731-44716622) | |
| 779-888, gnl|canFam2|chr26 (31373609-31373496) | |
| 779-888, gnl|danRer3|chr16 (15744070-15744180) | |
| 779-888, gnl|fr1|chrUn (41967277-41967157) | |
| 779-888, gnl|hg17|chr22 (22953424-22953544) | |
| 779-888, gnl|Hg17|chr22 (22953543-22953434) | |
| 779-888, gnl|loxAfr1|scaffold_128704 (1394-1514) | |
| 779-888, gnl|mm7|chr10 (75259736-75259616) | |
| 779-888, gnl|Mm7|chr10 (75259615-75259724) | |
| 779-888, gnl|monDom2|scaffold_94 (38627-38747) | |
| 779-888, gnl|oryCun1|scaffold_126684 (4645-4525) | |
| 779-888, gnl|panTro1|chr23 (23006234-23006354) | |
| 779-888, gnl|rheMac2|chr10 (68032810-68032690) | |
| 779-888, gnl|tetNig1|chr12 (11874669-11874549) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-554, gnl|bosTau2|chr17 (44721010-44720475) | |
| 1-554, gnl|canFam2|chr26 (31383196-31382552) | |
| 1-554, gnl|canFam2|chr26 (31383196-31382552) | |
| 1-554, gnl|hg17|chr13_random (77604-78282) | |
| 1-554, gnl|hg17|chr22 (17131225-17131896) | |
| 1-554, gnl|Hg17|chr22 (23353410-23353964) | |
| 1-554, gnl|mm7|chr10 (75245588-75244955) | |
| 1-554, gnl|mm7|chr10 (75245588-75244955) | |
| 1-554, gnl|Mm7|chr10 (75245010-75245533) | |
| 1-554, gnl|oryCun1|scaffold_62430 (732-1359) | |
| 1-554, gnl|oryCun1|scaffold_62430 (732-1359) | |
| 1-554, gnl|panTro1|chr23 (23018859-23019520) | |
| 1-554, gnl|panTro1|chr23 (23018859-23019520) | |
| 1-554, gnl|rheMac2|chr10 (68043817-68043161) | |
| 1-554, gnl|rheMac2|chr10 (68043817-68043161) | |
| 779-888, gnl|bosTau2|chr17 (44716731-44716622) | |
| 779-888, gnl|canFam2|chr26 (31373609-31373496) | |
| 779-888, gnl|danRer3|chr16 (15744070-15744180) | |
| 779-888, gnl|fr1|chrUn (41967277-41967157) | |
| 779-888, gnl|hg17|chr22 (22953424-22953544) | |
| 779-888, gnl|Hg17|chr22 (22953543-22953434) | |
| 779-888, gnl|loxAfr1|scaffold_128704 (1394-1514) | |
| 779-888, gnl|mm7|chr10 (75259736-75259616) | |
| 779-888, gnl|Mm7|chr10 (75259615-75259724) | |
| 779-888, gnl|monDom2|scaffold_94 (38627-38747) | |
| 779-888, gnl|oryCun1|scaffold_126684 (4645-4525) | |
| 779-888, gnl|panTro1|chr23 (23006234-23006354) | |
| 779-888, gnl|rheMac2|chr10 (68032810-68032690) | |
| 779-888, gnl|tetNig1|chr12 (11874669-11874549) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) |