Ss1.1-Spl1-SPL01B110052.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACACACTCAGGCTCTTCGCTTGGCTGTGGTGTTTCTTTTTTCTCGCCTATTCTGCTTCTT CTCATTCTTTCTCGCTCTTCTGCTTTGCGGTGTGACGAGGCCGAATCCTCTCCGCACCCA GCCGCCGTTTTCCTTCTGCCCGCGCTGTTGTATTTCTCTCTTTCGGCCGCCGCCGCCACT GCTACACAGCTGGTGTCGGTGCCGCGCTTTTCCCCCGACGTCGTCCCCGCAGCCTATGGC CCAGGCCGCCTTGGGTATTTCTGCTCAAGGTAACCACATCCCTCTTTAAAAATTCCGCCG AAAAAGAGAAGACGCTTTACCCGACTCTTTGGGCCGTTATCTCACGGCGAACTTTCTGAC CAAGTATACAACTACCCAGAGGGCCTAGGAGAAGTGCTGTATAGAGAGCAGTTCGACTTC AACGCTGAGCCACCTTGGGAACCTAGCTGATGATAGGGGGGTTCCATCTCCTAACTTGTC CATTTTGTTGCATATTCTAAGGACCCAGACGTAAGGCTTAGCGGCCCGTCTCTTGTTTTT CCTGGTTTATGACTTTCGGCTTTGTGGAATACGGCTGAGATGAAAGGATTTATTGATGAT GCAAACTACTCCGTTGGCCTGTTGGATGAAGGAACAAACCTTGGAAATGTTATTGATAAC TATGTTTATGAACATACCCTGACAGGAAAAAATGCATTTTTTGTGGGAGATCTTGGAAAG ATTGTGAAGAAACACAGTCAGTGGCAGAACATAGTGGCTCAGATAAAGCCATTCTACACG GTAAAGTGCAACTCCACTCCAGCTGTGCTTGAGATTTTGGCAGCTCTTGGAACTGGATTT GCTTGTTCCAGTAAAACTGAAATGGCTTTAGTGCAAGAATTGGGTGTATCGCCAGAAAAC ATCATTTACATAAGTCCTTGCAAGCAAGTGTCTCAGATAAAGTATGCGGCAAAAGTTGGA GTAAATATCATGACATGTGACAATGAAGTCGAATTAAAGAAAATTGCACGTAATCACCCA AATGCCAAGATTGTATTTCATTAGGTTCACTTGATTCATCCATCGCTGGATTTTGGAGCA CTGACAGCATAATCAACACACTTCCTACAATCTTCAGGCTTCACATGTGCTGATGATGAT GTAAACCAACTCTGCCCCAATCATCTTCCCCTTCTCTTAGGGTCTTACTACATATTGCAA CAGAAGATAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACACACTCAGGCTCTTCGCTTGGCTGTGGTGTTTCTTTTTTCTCGCCTATTCTGCTTCTT CTCATTCTTTCTCGCTCTTCTGCTTTGCGGTGTGACGAGGCCGAATCCTCTCCGCACCCA GCCGCCGTTTTCCTTCTGCCCGCGCTGTTGTATTTCTCTCTTTCGGCCGCCGCCGCCACT GCTACACAGCTGGTGTCGGTGCCGCGCTTTTCCCCCGACGTCGTCCCCGCAGCCTATGGC CCAGGCCGCCTTGGGTATTTCTGCTCAAGGTAACCACATCCCTCTTTAAAAATTCCGCCG AAAAAGAGAAGACGCTTTACCCGACTCTTTGGGCCGTTATCTCACGGCGAACTTTCTGAC CAAGTATACAACTACCCAGAGGGCCTAGGAGAAGTGCTGTATAGAGAGCAGTTCGACTTC AACGCTGAGCCACCTTGGGAACCTAGCTGATGATAGGGGGGTTCCATCTCCTAACTTGTC CATTTTGTTGCATATTCTAAGGACCCAGACGTAAGGCTTAGCGGCCCGTCTCTTGTTTTT CCTGGTTTATGACTTTCGGCTTTGTGGAATACGGCTGAGATGAAAGGATTTATTGATGAT GCAAACTACTCCGTTGGCCTGTTGGATGAAGGAACAAACCTTGGAAATGTTATTGATAAC TATGTTTATGAACATACCCTGACAGGAAAAAATGCATTTTTTGTGGGAGATCTTGGAAAG ATTGTGAAGAAACACAGTCAGTGGCAGAACATAGTGGCTCAGATAAAGCCATTCTACACG GTAAAGTGCAACTCCACTCCAGCTGTGCTTGAGATTTTGGCAGCTCTTGGAACTGGATTT GCTTGTTCCAGTAAAACTGAAATGGCTTTAGTGCAAGAATTGGGTGTATCGCCAGAAAAC ATCATTTACATAAGTCCTTGCAAGCAAGTGTCTCAGATAAAGTATGCGGCAAAAGTTGGA GTAAATATCATGACATGTGACAATGAAGTCGAATTAAAGAAAATTGCACGTAATCACCCA AATGCCAAGATTGTATTTCATTAGGTTCACTTGATTCATCCATCGCTGGATTTTGGAGCA CTGACAGCATAATCAACACACTTCCTACAATCTTCAGGCTTCACATGTGCTGATGATGAT GTAAACCAACTCTGCCCCAATCATCTTCCCCTTCTCTTAGGGTCTTACTACATATTGCAA CAGAAGATAATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 32-346, gnl|bosTau2|chr14 (37029771-37029445) | |
| 32-346, gnl|Hg17|chr8 (103945528-103945210) | |
| 32-346, gnl|Mm7|chr15 (38630119-38629809) | |
| 468-681, gnl|bosTau2|chr14 (37011337-37011125) | |
| 468-681, gnl|canFam2|chr13 (7397274-7397485) | |
| 468-681, gnl|danRer3|chr19 (48573387-48573576) | |
| 468-681, gnl|dasNov1|scaffold_69716 (8939-8750) | |
| 468-681, gnl|echTel1|scaffold_291150 (18373-18162) | |
| 468-681, gnl|fr1|chrUn (181920166-181919962) | |
| 468-681, gnl|galGal2|chr2 (127835239-127835033) | |
| 468-681, gnl|hg17|chr8 (103924950-103925160) | |
| 468-681, gnl|Hg17|chr8 (103925166-103924955) | |
| 468-681, gnl|mm7|chr15 (38612163-38612373) | |
| 468-681, gnl|Mm7|chr15 (38612379-38612168) | |
| 468-681, gnl|monDom2|scaffold_3 (59941692-59941480) | |
| 468-681, gnl|oryCun1|scaffold_214928 (16978-17177) | |
| 468-681, gnl|panTro1|chr7 (106317085-106317295) | |
| 468-681, gnl|rheMac2|chr8 (105357682-105357892) | |
| 468-681, gnl|rn3|chr7 (74194781-74194991) | |
| 468-681, gnl|tetNig1|chr8 (9639403-9639192) | |
| 468-681, gnl|xenTro1|scaffold_3 (5544547-5544343) | |
| 692-1037, gnl|bosTau2|chr11 (66707837-66707492) | |
| 692-1037, gnl|Hg17|chr7 (128263012-128263336) | |
| 692-1037, gnl|Mm7|chr5 (95187703-95188048) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 32-346, gnl|bosTau2|chr14 (37029771-37029445) | |
| 32-346, gnl|Hg17|chr8 (103945528-103945210) | |
| 32-346, gnl|Mm7|chr15 (38630119-38629809) | |
| 468-681, gnl|bosTau2|chr14 (37011337-37011125) | |
| 468-681, gnl|canFam2|chr13 (7397274-7397485) | |
| 468-681, gnl|danRer3|chr19 (48573387-48573576) | |
| 468-681, gnl|dasNov1|scaffold_69716 (8939-8750) | |
| 468-681, gnl|echTel1|scaffold_291150 (18373-18162) | |
| 468-681, gnl|fr1|chrUn (181920166-181919962) | |
| 468-681, gnl|galGal2|chr2 (127835239-127835033) | |
| 468-681, gnl|hg17|chr8 (103924950-103925160) | |
| 468-681, gnl|Hg17|chr8 (103925166-103924955) | |
| 468-681, gnl|mm7|chr15 (38612163-38612373) | |
| 468-681, gnl|Mm7|chr15 (38612379-38612168) | |
| 468-681, gnl|monDom2|scaffold_3 (59941692-59941480) | |
| 468-681, gnl|oryCun1|scaffold_214928 (16978-17177) | |
| 468-681, gnl|panTro1|chr7 (106317085-106317295) | |
| 468-681, gnl|rheMac2|chr8 (105357682-105357892) | |
| 468-681, gnl|rn3|chr7 (74194781-74194991) | |
| 468-681, gnl|tetNig1|chr8 (9639403-9639192) | |
| 468-681, gnl|xenTro1|scaffold_3 (5544547-5544343) | |
| 692-1037, gnl|bosTau2|chr11 (66707837-66707492) | |
| 692-1037, gnl|Hg17|chr7 (128263012-128263336) | |
| 692-1037, gnl|Mm7|chr5 (95187703-95188048) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| tes (0.207814) |