Non-Coding RNA Search

Ss1.1-Spl1-SPL01B110085.5

Sequence:


               
               CGGCTTTCAATGCACCTCCCGCCGCTTTCGCTGCCCCTGCTGCTGCTCCTCGCGGCACTC
GCGGCAGCCACCACCACCTTCCGGCCCGACTGGAACCTCCAGCGGGGACCCGGCCAGCCC
GAGGGCCCAGACGTGGCGCTGTGGCCGGGCGGTTCACCTCTAGTTTTCGGATCACCTCCG
GCCGGCTTTCAATGCACCTCCCGCCGCTTTCGCTGCCCCTGCTGCTGCTCCTCGCGGCAC
TCGCGGCAGCCACCACCACCTTCCGGCCCGACTGGAACCGTCTACAAGGCCTGGCCCGAG
CCCGGGTAGAGACCTGTGGGGGATGACAGCTGAATCGCCTCAAAGAGGTGAAGGCCTTCG
TCACCCAGGACATCCCACTCTACCACAACCTGGTCATGAAACATCTCCCGGGGGCCGACC
CAGAGCTCGTGCTACTGGGCCACCGCTTTGAGGAACTGGAGCGAATCCCACTCAGCGACA
TGACCCGCGAAGAGATCAACGCGCTGGTGCAGGAGCTCGGCTTCTATCGCAAGGCGGCGC
CGGACGACCCTGTGCCTCCCGAGTACATGCGGGCACCCGCTAGGCCCGCCGAAGGAGCTC
CTGACCGCGCTGACCTGTAGGTCTGGCGGCGCGGCACCCCACCCTGCCTGAGCCTTAGGG
ACAGAATGAAGCGCTCAGCGTCCCGGGAGCCCCTCCCTCGCTGAGAGTCGACGACCCGTC
CCCGAGCCAGCAGGGATGGAGTTGGGGGTTCCTCCTAAGCCGTATTTCTCCCCTCCCCAG
CTCCACTAAATCCCCCTCTGCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTTTCAATGCACCTCCCGCCGCTTTCGCTGCCCCTGCTGCTGCTCCTCGCGGCACTC
GCGGCAGCCACCACCACCTTCCGGCCCGACTGGAACCTCCAGCGGGGACCCGGCCAGCCC
GAGGGCCCAGACGTGGCGCTGTGGCCGGGCGGTTCACCTCTAGTTTTCGGATCACCTCCG
GCCGGCTTTCAATGCACCTCCCGCCGCTTTCGCTGCCCCTGCTGCTGCTCCTCGCGGCAC
TCGCGGCAGCCACCACCACCTTCCGGCCCGACTGGAACCGTCTACAAGGCCTGGCCCGAG
CCCGGGTAGAGACCTGTGGGGGATGACAGCTGAATCGCCTCAAAGAGGTGAAGGCCTTCG
TCACCCAGGACATCCCACTCTACCACAACCTGGTCATGAAACATCTCCCGGGGGCCGACC
CAGAGCTCGTGCTACTGGGCCACCGCTTTGAGGAACTGGAGCGAATCCCACTCAGCGACA
TGACCCGCGAAGAGATCAACGCGCTGGTGCAGGAGCTCGGCTTCTATCGCAAGGCGGCGC
CGGACGACCCTGTGCCTCCCGAGTACATGCGGGCACCCGCTAGGCCCGCCGAAGGAGCTC
CTGACCGCGCTGACCTGTAGGTCTGGCGGCGCGGCACCCCACCCTGCCTGAGCCTTAGGG
ACAGAATGAAGCGCTCAGCGTCCCGGGAGCCCCTCCCTCGCTGAGAGTCGACGACCCGTC
CCCGAGCCAGCAGGGATGGAGTTGGGGGTTCCTCCTAAGCCGTATTTCTCCCCTCCCCAG
CTCCACTAAATCCCCCTCTGCCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27805722|sp|Q8WWX9|SELM_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27805722|sp|Q8WWX9|SELM_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               171-804, + strand, RNAz p=0.999718

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-804, + strand, RNAz p=0.999718

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               92-409, gnl|bosTau2|chr17 (44268598-44268915)
               


               
               621-804, gnl|bosTau2|chr17 (44271117-44271309)
               

               
               621-804, gnl|Hg17|chr22 (29825509-29825319)
               

               
               621-804, gnl|Mm7|chr11 (3469188-3469352)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-409, gnl|bosTau2|chr17 (44268598-44268915)
               


               
               621-804, gnl|bosTau2|chr17 (44271117-44271309)
               

               
               621-804, gnl|Hg17|chr22 (29825509-29825319)
               

               
               621-804, gnl|Mm7|chr11 (3469188-3469352)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               ute (0.531138)
               

               
               cov (0.528611)
               

               
               nep (0.36785)
               

               
               eru (0.360144)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               jca (0.22792)
               

               
               eje (0.197668)
               

               
               mgm (0.180343)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cly (0.120642)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.531138)
               

               
               cov (0.528611)
               

               
               nep (0.36785)
               

               
               eru (0.360144)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               jca (0.22792)
               

               
               eje (0.197668)
               

               
               mgm (0.180343)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cly (0.120642)

	92-409, gnl\|bosTau2\|chr17 (44268598-44268915)

	621-804, gnl\|bosTau2\|chr17 (44271117-44271309)
	621-804, gnl\|Hg17\|chr22 (29825509-29825319)
	621-804, gnl\|Mm7\|chr11 (3469188-3469352)

	ute (0.531138)
	cov (0.528611)
	nep (0.36785)
	eru (0.360144)
	cga (0.279096)
	fce (0.271592)
	nmm (0.265604)
	ese (0.253004)
	jca (0.22792)
	eje (0.197668)
	mgm (0.180343)
	duo (0.172801)
	eye (0.170503)
	cly (0.120642)