Ss1.1-Spl1-SPL01B110093.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGGCAGCAGCGCAGCTTCTGGCCCGTCAGGGTTGCGCTGTCTTCTCCACTCGGATCTC CGCCGGAAGCGGAGGAAACAAAAGCCTGGAGATTTGAATCTACCTGCTTTCAAGCTAGTC ATCATGATGAAACTTAGGCACAAAAATAAAAAGCCAGGTAAAGGTTCCAAAGGCTGCAAG AAGCCTGCAAAGCAGAATGGAAAGAAAGCAGCCTCCAAAGTGACCTCTGCTCCCCAGTTT GTTCACTCCAGTGATCATGCCAATCGAGAGGCTGAATTAAAGAAGAAGAGGGTTGAGGAG ATGAGGGAGAAGCAGCAGGCTGCCCGGGAGCAAGAGAGACACAGACGCAGGACCATCGAG AGCTACTGTCAGGATGTCCTGCGACGCCAAGAGGAGTTTGAGCGCAAGGAGGAAGTTTTG CAGGAGTTAAATATGTTTCCTCAACTGGATGATGAGGCCACAAGGAAGGCTTATTATAAG GAGTTCCGTAAGGTGGTGGAATACTCTGATGTAATTCTAGAAGTCCTGGATGCCAGAGAC CCATTGGGCTGCCGCTGCTTCCAAATGGAGGAGGCTGTCCTGGGGGCAGAAGGCAACAAG AAGCTGGTCCTGGTCTTGAACAAGATTGACCTGGTCCCCAAGGAGGTTGTGGAGAAGTGG CTGGATTACTTGAGGAATGAGCTGCCAACCGTGGCTTTCAAGGCCAGCACCCAGCATCAG GTCAAAAACCTGAATCGCTGTAGTGTGCCAGTGGAGCAGGCCTCTGAGTCACTACTGAAA AGCAAAGCCTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGGCAGCAGCGCAGCTTCTGGCCCGTCAGGGTTGCGCTGTCTTCTCCACTCGGATCTC CGCCGGAAGCGGAGGAAACAAAAGCCTGGAGATTTGAATCTACCTGCTTTCAAGCTAGTC ATCATGATGAAACTTAGGCACAAAAATAAAAAGCCAGGTAAAGGTTCCAAAGGCTGCAAG AAGCCTGCAAAGCAGAATGGAAAGAAAGCAGCCTCCAAAGTGACCTCTGCTCCCCAGTTT GTTCACTCCAGTGATCATGCCAATCGAGAGGCTGAATTAAAGAAGAAGAGGGTTGAGGAG ATGAGGGAGAAGCAGCAGGCTGCCCGGGAGCAAGAGAGACACAGACGCAGGACCATCGAG AGCTACTGTCAGGATGTCCTGCGACGCCAAGAGGAGTTTGAGCGCAAGGAGGAAGTTTTG CAGGAGTTAAATATGTTTCCTCAACTGGATGATGAGGCCACAAGGAAGGCTTATTATAAG GAGTTCCGTAAGGTGGTGGAATACTCTGATGTAATTCTAGAAGTCCTGGATGCCAGAGAC CCATTGGGCTGCCGCTGCTTCCAAATGGAGGAGGCTGTCCTGGGGGCAGAAGGCAACAAG AAGCTGGTCCTGGTCTTGAACAAGATTGACCTGGTCCCCAAGGAGGTTGTGGAGAAGTGG CTGGATTACTTGAGGAATGAGCTGCCAACCGTGGCTTTCAAGGCCAGCACCCAGCATCAG GTCAAAAACCTGAATCGCTGTAGTGTGCCAGTGGAGCAGGCCTCTGAGTCACTACTGAAA AGCAAAGCCTGC |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 291-409, gnl|bosTau2|chrX (26726006-26726124) | |
| 291-409, gnl|canFam2|chrX (46255926-46256051) | |
| 291-409, gnl|canFam2|chrX (46256039-46255929) | |
| 291-409, gnl|dasNov1|scaffold_13174 (42211-42086) | |
| 291-409, gnl|dasNov1|scaffold_13174 (42098-42206) | |
| 291-409, gnl|echTel1|scaffold_260076 (1164-1039) | |
| 291-409, gnl|echTel1|scaffold_260076 (1051-1162) | |
| 291-409, gnl|fr1|chrUn (4174384-4174508) | |
| 291-409, gnl|hg17|chr5 (60224887-60224999) | |
| 291-409, gnl|hg17|chrX (54450725-54450850) | |
| 291-409, gnl|Hg17|chrX (54450726-54450844) | |
| 291-409, gnl|loxAfr1|scaffold_41943 (289-414) | |
| 291-409, gnl|loxAfr1|scaffold_41943 (402-291) | |
| 291-409, gnl|mm7|chrX (145760969-145760844) | |
| 291-409, gnl|mm7|chrX (145760856-145760967) | |
| 291-409, gnl|Mm7|chrX (145760966-145760848) | |
| 291-409, gnl|monDom2|scaffold_39 (17602430-17602542) | |
| 291-409, gnl|oryCun1|scaffold_120427 (6038-6163) | |
| 291-409, gnl|oryCun1|scaffold_120427 (6151-6040) | |
| 291-409, gnl|panTro1|chr4 (55722968-55722856) | |
| 291-409, gnl|panTro1|chrX (55715782-55715907) | |
| 291-409, gnl|rheMac2|chr6 (58588931-58589040) | |
| 291-409, gnl|rheMac2|chrX (52871384-52871509) | |
| 291-409, gnl|rn3|chrX (40372503-40372378) | |
| 291-409, gnl|rn3|chrX (40372390-40372501) | |
| 291-409, gnl|xenTro1|scaffold_82 (1151993-1151868) | |
| 491-628, gnl|bosTau2|chrX (26727099-26727236) | |
| 491-628, gnl|canFam2|chrX (46257068-46257227) | |
| 491-628, gnl|canFam2|chrX (46257202-46257071) | |
| 491-628, gnl|danRer3|chr11 (25751042-25751183) | |
| 491-628, gnl|danRer3|chr11 (25751176-25751041) | |
| 491-628, gnl|dasNov1|scaffold_3990 (98765-98918) | |
| 491-628, gnl|echTel1|scaffold_234142 (651-812) | |
| 491-628, gnl|echTel1|scaffold_238327 (4020-4141) | |
| 491-628, gnl|fr1|chrUn (4175016-4175157) | |
| 491-628, gnl|fr1|chrUn (4175150-4175024) | |
| 491-628, gnl|hg17|chr5 (60224661-60224804) | |
| 491-628, gnl|hg17|chrX (54452661-54452821) | |
| 491-628, gnl|Hg17|chrX (54452659-54452796) | |
| 491-628, gnl|loxAfr1|scaffold_41943 (2251-2411) | |
| 491-628, gnl|loxAfr1|scaffold_41943 (2385-2248) | |
| 491-628, gnl|mm7|chrX (145759415-145759256) | |
| 491-628, gnl|mm7|chrX (145759281-145759421) | |
| 491-628, gnl|Mm7|chrX (145759415-145759278) | |
| 491-628, gnl|monDom2|scaffold_39 (17602200-17602340) | |
| 491-628, gnl|oryCun1|scaffold_183037 (6078-5946) | |
| 491-628, gnl|oryCun1|scaffold_183037 (5945-6075) | |
| 491-628, gnl|panTro1|chr4 (55723058-55723194) | |
| 491-628, gnl|panTro1|chr4 (55723193-55723052) | |
| 491-628, gnl|rheMac2|chr6 (58588707-58588847) | |
| 491-628, gnl|rheMac2|chrX (52873628-52873788) | |
| 491-628, gnl|rn3|chrX (40371213-40371054) | |
| 491-628, gnl|rn3|chrX (40371079-40371219) | |
| 491-628, gnl|tetNig1|chr11 (9283408-9283549) | |
| 491-628, gnl|tetNig1|chr11 (9283542-9283407) | |
| 491-628, gnl|xenTro1|scaffold_82 (1150350-1150203) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 291-409, gnl|bosTau2|chrX (26726006-26726124) | |
| 291-409, gnl|canFam2|chrX (46255926-46256051) | |
| 291-409, gnl|canFam2|chrX (46256039-46255929) | |
| 291-409, gnl|dasNov1|scaffold_13174 (42211-42086) | |
| 291-409, gnl|dasNov1|scaffold_13174 (42098-42206) | |
| 291-409, gnl|echTel1|scaffold_260076 (1164-1039) | |
| 291-409, gnl|echTel1|scaffold_260076 (1051-1162) | |
| 291-409, gnl|fr1|chrUn (4174384-4174508) | |
| 291-409, gnl|hg17|chr5 (60224887-60224999) | |
| 291-409, gnl|hg17|chrX (54450725-54450850) | |
| 291-409, gnl|Hg17|chrX (54450726-54450844) | |
| 291-409, gnl|loxAfr1|scaffold_41943 (289-414) | |
| 291-409, gnl|loxAfr1|scaffold_41943 (402-291) | |
| 291-409, gnl|mm7|chrX (145760969-145760844) | |
| 291-409, gnl|mm7|chrX (145760856-145760967) | |
| 291-409, gnl|Mm7|chrX (145760966-145760848) | |
| 291-409, gnl|monDom2|scaffold_39 (17602430-17602542) | |
| 291-409, gnl|oryCun1|scaffold_120427 (6038-6163) | |
| 291-409, gnl|oryCun1|scaffold_120427 (6151-6040) | |
| 291-409, gnl|panTro1|chr4 (55722968-55722856) | |
| 291-409, gnl|panTro1|chrX (55715782-55715907) | |
| 291-409, gnl|rheMac2|chr6 (58588931-58589040) | |
| 291-409, gnl|rheMac2|chrX (52871384-52871509) | |
| 291-409, gnl|rn3|chrX (40372503-40372378) | |
| 291-409, gnl|rn3|chrX (40372390-40372501) | |
| 291-409, gnl|xenTro1|scaffold_82 (1151993-1151868) | |
| 491-628, gnl|bosTau2|chrX (26727099-26727236) | |
| 491-628, gnl|canFam2|chrX (46257068-46257227) | |
| 491-628, gnl|canFam2|chrX (46257202-46257071) | |
| 491-628, gnl|danRer3|chr11 (25751042-25751183) | |
| 491-628, gnl|danRer3|chr11 (25751176-25751041) | |
| 491-628, gnl|dasNov1|scaffold_3990 (98765-98918) | |
| 491-628, gnl|echTel1|scaffold_234142 (651-812) | |
| 491-628, gnl|echTel1|scaffold_238327 (4020-4141) | |
| 491-628, gnl|fr1|chrUn (4175016-4175157) | |
| 491-628, gnl|fr1|chrUn (4175150-4175024) | |
| 491-628, gnl|hg17|chr5 (60224661-60224804) | |
| 491-628, gnl|hg17|chrX (54452661-54452821) | |
| 491-628, gnl|Hg17|chrX (54452659-54452796) | |
| 491-628, gnl|loxAfr1|scaffold_41943 (2251-2411) | |
| 491-628, gnl|loxAfr1|scaffold_41943 (2385-2248) | |
| 491-628, gnl|mm7|chrX (145759415-145759256) | |
| 491-628, gnl|mm7|chrX (145759281-145759421) | |
| 491-628, gnl|Mm7|chrX (145759415-145759278) | |
| 491-628, gnl|monDom2|scaffold_39 (17602200-17602340) | |
| 491-628, gnl|oryCun1|scaffold_183037 (6078-5946) | |
| 491-628, gnl|oryCun1|scaffold_183037 (5945-6075) | |
| 491-628, gnl|panTro1|chr4 (55723058-55723194) | |
| 491-628, gnl|panTro1|chr4 (55723193-55723052) | |
| 491-628, gnl|rheMac2|chr6 (58588707-58588847) | |
| 491-628, gnl|rheMac2|chrX (52873628-52873788) | |
| 491-628, gnl|rn3|chrX (40371213-40371054) | |
| 491-628, gnl|rn3|chrX (40371079-40371219) | |
| 491-628, gnl|tetNig1|chr11 (9283408-9283549) | |
| 491-628, gnl|tetNig1|chr11 (9283542-9283407) | |
| 491-628, gnl|xenTro1|scaffold_82 (1150350-1150203) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.140036) | |
| ese (0.126502) | |
| eje (0.0988338) |