Ss1.1-Spl1-SPL01B110103.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTAAAAGGAACTCGCGCGAGAGTGGCGCTCGGTACTCAGTGCGCAGGTGCGAAGCCTCT TGGCTGGGGCCCTGGCCGGGGGCTGGCTTGAAGACGCGTCGTTTGGTTTTGGACGCTTTG AGAGAGCCGTCTGGTATCAACCGCTGGGCGGAAGGCGTTTGTCAGGGGCCCGGCCACGAA CGAGGCCCACGAGTTTCCCGATGGTGTCCATGACTTTCAAGCGGAGCCGCAGCGACCGGT TCTACAGCACCCGGTGCTGCGGCTGTTGCCATGTCCGCACCGGGACGATCATCCTGGGGA CCTGGTACATGGTGGTCAACCTGTTGATGGCAATTTTGCTGACTGTTGAGGTGACACATC CAAACTCAGTGCCAGCTGTCAACATTCAGTATGAAGTCATTGGCAATTACTATTCATCTG AGAGAATGGCAGATAATGCCTGTGTTCTTTTTGCGGTCTCTGTTCTTATGTTTATAATCA GTTCAATGCTGGTTTATGGAGCAATTTCTTATCAAGTGGGTTGGTTGATTCCATTCTTCT GTTACCGGCTTTTTGACTTCGTTCTCAGCTGCCTGGTTGCTATCAGTTCTCTAACTTACT TGCCAAGAATCAAAGAATATCTGGATCAATTACCTGATTTCCCCTATAAAGACGACCTCC TGGCATTGGACTCCAGCTGCCTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTGTTCATCA TTTTTAAGGCTTATCTAATCAACTGTGTTTGGAACTGTTACAAATACATCAACAACAGAA ACATGCCAGAGATTGCTGTGTATCCTGCCTTTGAAGCACCTCCACAGTATGTTTTGCCAA CCTATGAAATGGCAGTGAAGATGCCTGAGAAAGAACCCCCGCCTCCTTACATACCTGCCT GAAGAAATGCTGCCTTTGTCAATAAACCCTATACCAGCTTTTCGTCTTGTTTATTTTACA GAATGCTGCAATACAGGGCTCTTCAAACTTGTTTGATATAAAGTACATTTTACTTTAAGC ATTTATTTTCAAACACTAACAAGCTTGTTGGATATCTATGAAAAGACTTTTGTTGTTTTG TTCAGTATATTACATTTTAATAGTTTTTGAAGACAATCTAGGTTAAGAGCAAAATGCCAT TGTTTGCCTTTGATTGGGGGGTGGGAAGGGGGCATTCTCCACACATAATCTTTTTTAACT TTGCACTTTCTTCATATCACAGTTTGTATTTTGGTTATTTGCTGCCCTGGATACTTTCAG GAAGAATGAAGTAAATACTCGGGGTGGGCAAGTTTAGTATAAGATCTGAAGTTTTCAGCT GTGAAAAAAACAAAAAATATACTACATTTTATCTTGACTGTGGGTGATGATGGTTGCATG TTTCTAATTTGTACGTGTTTCCATCTTTGTGATAAGATGCTTTAATAAATCTCTTAAATA TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTAAAAGGAACTCGCGCGAGAGTGGCGCTCGGTACTCAGTGCGCAGGTGCGAAGCCTCT TGGCTGGGGCCCTGGCCGGGGGCTGGCTTGAAGACGCGTCGTTTGGTTTTGGACGCTTTG AGAGAGCCGTCTGGTATCAACCGCTGGGCGGAAGGCGTTTGTCAGGGGCCCGGCCACGAA CGAGGCCCACGAGTTTCCCGATGGTGTCCATGACTTTCAAGCGGAGCCGCAGCGACCGGT TCTACAGCACCCGGTGCTGCGGCTGTTGCCATGTCCGCACCGGGACGATCATCCTGGGGA CCTGGTACATGGTGGTCAACCTGTTGATGGCAATTTTGCTGACTGTTGAGGTGACACATC CAAACTCAGTGCCAGCTGTCAACATTCAGTATGAAGTCATTGGCAATTACTATTCATCTG AGAGAATGGCAGATAATGCCTGTGTTCTTTTTGCGGTCTCTGTTCTTATGTTTATAATCA GTTCAATGCTGGTTTATGGAGCAATTTCTTATCAAGTGGGTTGGTTGATTCCATTCTTCT GTTACCGGCTTTTTGACTTCGTTCTCAGCTGCCTGGTTGCTATCAGTTCTCTAACTTACT TGCCAAGAATCAAAGAATATCTGGATCAATTACCTGATTTCCCCTATAAAGACGACCTCC TGGCATTGGACTCCAGCTGCCTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTGTTCATCA TTTTTAAGGCTTATCTAATCAACTGTGTTTGGAACTGTTACAAATACATCAACAACAGAA ACATGCCAGAGATTGCTGTGTATCCTGCCTTTGAAGCACCTCCACAGTATGTTTTGCCAA CCTATGAAATGGCAGTGAAGATGCCTGAGAAAGAACCCCCGCCTCCTTACATACCTGCCT GAAGAAATGCTGCCTTTGTCAATAAACCCTATACCAGCTTTTCGTCTTGTTTATTTTACA GAATGCTGCAATACAGGGCTCTTCAAACTTGTTTGATATAAAGTACATTTTACTTTAAGC ATTTATTTTCAAACACTAACAAGCTTGTTGGATATCTATGAAAAGACTTTTGTTGTTTTG TTCAGTATATTACATTTTAATAGTTTTTGAAGACAATCTAGGTTAAGAGCAAAATGCCAT TGTTTGCCTTTGATTGGGGGGTGGGAAGGGGGCATTCTCCACACATAATCTTTTTTAACT TTGCACTTTCTTCATATCACAGTTTGTATTTTGGTTATTTGCTGCCCTGGATACTTTCAG GAAGAATGAAGTAAATACTCGGGGTGGGCAAGTTTAGTATAAGATCTGAAGTTTTCAGCT GTGAAAAAAACAAAAAATATACTACATTTTATCTTGACTGTGGGTGATGATGGTTGCATG TTTCTAATTTGTACGTGTTTCCATCTTTGTGATAAGATGCTTTAATAAATCTCTTAAATA TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 157-313, + strand, RNAz p=0.953002 | |
| 953-1066, - strand, RNAz p=0.833314 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 157-313, + strand, RNAz p=0.953002 | |
| 953-1066, - strand, RNAz p=0.833314 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_014713, + | |
| 5' of NM_014713, - |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 3-313, gnl|bosTau2|chr11 (60247966-60247654) | |
| 3-313, gnl|Hg17|chr2 (20173088-20172797) | |
| 3-313, gnl|Mm7|chr12 (8948218-8948529) | |
| 510-632, gnl|bosTau2|chr11 (60233591-60233469) | |
| 510-632, gnl|canFam2|chr17 (18048474-18048641) | |
| 510-632, gnl|danRer3|chr20 (51956571-51956731) | |
| 510-632, gnl|dasNov1|scaffold_174530 (2776-2939) | |
| 510-632, gnl|echTel1|scaffold_261876 (14221-14388) | |
| 510-632, gnl|fr1|chrUn (80864643-80864795) | |
| 510-632, gnl|galGal2|chr3 (99654041-99654209) | |
| 510-632, gnl|hg17|chr2 (20158690-20158856) | |
| 510-632, gnl|Hg17|chr2 (20158827-20158705) | |
| 510-632, gnl|loxAfr1|scaffold_8971 (37493-37329) | |
| 510-632, gnl|mm7|chr12 (8961238-8961078) | |
| 510-632, gnl|Mm7|chr12 (8961099-8961221) | |
| 510-632, gnl|oryCun1|scaffold_175401 (19387-19542) | |
| 510-632, gnl|panTro1|chr12 (20984732-20984898) | |
| 510-632, gnl|rheMac2|chr13 (19934851-19935018) | |
| 510-632, gnl|rn3|chr6 (32427392-32427233) | |
| 510-632, gnl|tetNig1|chr14 (4072895-4072755) | |
| 825-1442, gnl|bosTau2|chr11 (60230340-60229716) | |
| 825-1442, gnl|canFam2|chr17 (18042904-18043516) | |
| 825-1442, gnl|dasNov1|scaffold_155501 (2913-3457) | |
| 825-1442, gnl|echTel1|scaffold_261876 (9546-10101) | |
| 825-1442, gnl|galGal2|chr3 (99650128-99650834) | |
| 825-1442, gnl|hg17|chr2 (20154021-20154593) | |
| 825-1442, gnl|Hg17|chr2 (20154671-20154041) | |
| 825-1442, gnl|loxAfr1|scaffold_8971 (42017-41445) | |
| 825-1442, gnl|mm7|chr12 (8964975-8964427) | |
| 825-1442, gnl|Mm7|chr12 (8964347-8964959) | |
| 825-1442, gnl|oryCun1|scaffold_172611 (13869-14424) | |
| 825-1442, gnl|panTro1|chr12 (20980061-20980633) | |
| 825-1442, gnl|rheMac2|chr13 (19930198-19930769) | |
| 825-1442, gnl|rn3|chr6 (32430886-32430373) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-313, gnl|bosTau2|chr11 (60247966-60247654) | |
| 3-313, gnl|Hg17|chr2 (20173088-20172797) | |
| 3-313, gnl|Mm7|chr12 (8948218-8948529) | |
| 510-632, gnl|bosTau2|chr11 (60233591-60233469) | |
| 510-632, gnl|canFam2|chr17 (18048474-18048641) | |
| 510-632, gnl|danRer3|chr20 (51956571-51956731) | |
| 510-632, gnl|dasNov1|scaffold_174530 (2776-2939) | |
| 510-632, gnl|echTel1|scaffold_261876 (14221-14388) | |
| 510-632, gnl|fr1|chrUn (80864643-80864795) | |
| 510-632, gnl|galGal2|chr3 (99654041-99654209) | |
| 510-632, gnl|hg17|chr2 (20158690-20158856) | |
| 510-632, gnl|Hg17|chr2 (20158827-20158705) | |
| 510-632, gnl|loxAfr1|scaffold_8971 (37493-37329) | |
| 510-632, gnl|mm7|chr12 (8961238-8961078) | |
| 510-632, gnl|Mm7|chr12 (8961099-8961221) | |
| 510-632, gnl|oryCun1|scaffold_175401 (19387-19542) | |
| 510-632, gnl|panTro1|chr12 (20984732-20984898) | |
| 510-632, gnl|rheMac2|chr13 (19934851-19935018) | |
| 510-632, gnl|rn3|chr6 (32427392-32427233) | |
| 510-632, gnl|tetNig1|chr14 (4072895-4072755) | |
| 825-1442, gnl|bosTau2|chr11 (60230340-60229716) | |
| 825-1442, gnl|canFam2|chr17 (18042904-18043516) | |
| 825-1442, gnl|dasNov1|scaffold_155501 (2913-3457) | |
| 825-1442, gnl|echTel1|scaffold_261876 (9546-10101) | |
| 825-1442, gnl|galGal2|chr3 (99650128-99650834) | |
| 825-1442, gnl|hg17|chr2 (20154021-20154593) | |
| 825-1442, gnl|Hg17|chr2 (20154671-20154041) | |
| 825-1442, gnl|loxAfr1|scaffold_8971 (42017-41445) | |
| 825-1442, gnl|mm7|chr12 (8964975-8964427) | |
| 825-1442, gnl|Mm7|chr12 (8964347-8964959) | |
| 825-1442, gnl|oryCun1|scaffold_172611 (13869-14424) | |
| 825-1442, gnl|panTro1|chr12 (20980061-20980633) | |
| 825-1442, gnl|rheMac2|chr13 (19930198-19930769) | |
| 825-1442, gnl|rn3|chr6 (32430886-32430373) |
| Expressed library(ies): 81 entry(ies) | More info |
| Expressed library(ies): 81 entry(ies) | Help | Less info |
| sug (2.41853) | |
| cty (1.76936) | |
| ski (1.76082) | |
| pro (1.5361) | |
| spl (1.43184) | |
| bla (1.36782) | |
| tra (1.35401) | |
| clu (1.3161) | |
| tes (1.24688) | |
| hea (1.22699) | |
| nep (1.10355) | |
| lyg (1.06482) | |
| nmm (1.06242) | |
| amn (0.835422) | |
| ldo (0.776021) | |
| elu (0.770713) | |
| eru (0.720288) | |
| gul (0.710353) | |
| mgp (0.692042) | |
| nje (0.66368) | |
| cov (0.660764) | |
| kid (0.648677) | |
| sme (0.610874) | |
| eje (0.593003) | |
| pgl (0.592417) | |
| fat (0.58971) | |
| cte (0.58548) | |
| liv (0.585137) | |
| nlu (0.575043) | |
| mgm (0.541028) | |
| ste (0.540833) | |
| sto (0.539471) | |
| pla (0.534688) | |
| rec (0.519211) | |
| ova (0.516529) | |
| fhi (0.508733) | |
| nco (0.485201) | |
| cbe (0.478469) | |
| fco (0.471624) | |
| lun (0.451467) | |
| isp (0.451128) | |
| bfe (0.449573) | |
| lnt (0.426925) | |
| csk (0.422238) | |
| mas (0.42061) | |
| ssp (0.406559) | |
| aor (0.390549) | |
| ese (0.379507) | |
| cmu (0.372787) | |
| eep (0.367692) | |
| duo (0.345602) | |
| cbl (0.344392) | |
| mcp (0.341297) | |
| cki (0.330469) | |
| mga (0.32041) | |
| cli (0.305623) | |
| nbm (0.297974) | |
| jej (0.296765) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| ute (0.265569) | |
| ret (0.257467) | |
| med (0.232504) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| nca (0.136874) | |
| che (0.136314) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 81 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (2.41853) | |
| cty (1.76936) | |
| ski (1.76082) | |
| pro (1.5361) | |
| spl (1.43184) | |
| bla (1.36782) | |
| tra (1.35401) | |
| clu (1.3161) | |
| tes (1.24688) | |
| hea (1.22699) | |
| nep (1.10355) | |
| lyg (1.06482) | |
| nmm (1.06242) | |
| amn (0.835422) | |
| ldo (0.776021) | |
| elu (0.770713) | |
| eru (0.720288) | |
| gul (0.710353) | |
| mgp (0.692042) | |
| nje (0.66368) | |
| cov (0.660764) | |
| kid (0.648677) | |
| sme (0.610874) | |
| eje (0.593003) | |
| pgl (0.592417) | |
| fat (0.58971) | |
| cte (0.58548) | |
| liv (0.585137) | |
| nlu (0.575043) | |
| mgm (0.541028) | |
| ste (0.540833) | |
| sto (0.539471) | |
| pla (0.534688) | |
| rec (0.519211) | |
| ova (0.516529) | |
| fhi (0.508733) | |
| nco (0.485201) | |
| cbe (0.478469) | |
| fco (0.471624) | |
| lun (0.451467) | |
| isp (0.451128) | |
| bfe (0.449573) | |
| lnt (0.426925) | |
| csk (0.422238) | |
| mas (0.42061) | |
| ssp (0.406559) | |
| aor (0.390549) | |
| ese (0.379507) | |
| cmu (0.372787) | |
| eep (0.367692) | |
| duo (0.345602) | |
| cbl (0.344392) | |
| mcp (0.341297) | |
| cki (0.330469) | |
| mga (0.32041) | |
| cli (0.305623) | |
| nbm (0.297974) | |
| jej (0.296765) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| ute (0.265569) | |
| ret (0.257467) | |
| med (0.232504) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cje (0.165235) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| nca (0.136874) | |
| che (0.136314) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) |