Non-Coding RNA Search

Ss1.1-Spl1-SPL01C040047.5.5

Sequence:


               
               GCCCGCTCCCCTTTTCCCCCTCAGTCGCCTCGCGCCTGCAGTTTTTGGCTTTCACCCCCC
CACCAGTGACCAAAGACTTGACCACTCAAAGTCCAGCTCCCCAGAACACTGCTCGACATG
GACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACCATCCGGCTACTTATGCAT
GGAAAGGAAGTTGGCAGTATCATCGGAAAGAAAGGAGAATCGGTTAAGAAGATGCGAGAG
GAGAGTGGTGCACGTATCAACATCTCAGAAGGGAATTGTCCTGAGAGAATTATCACTTTG
GCTGGACCCACTAATGCCATCTTCAAAGCCTTTGCTATGATCATTGACAAACTGGAAGAG
GACATCAGCAGCTCTATGACCAATAGCACAGCTGCCAGTAGACCCCCAGTCACCCTGAGG
CTGGTGGTCCCTGCTAGTCAGTGTGGCTCTCTCATTGGGAAAGGTGGTTGCAAGATCAAA
GAGATTCGGGAGAGTACAGGAGCTCAGGTCCAGGTGGCAGGGGACATGCTCCCCAACTCC
ACTGAGCGGGCCATCACTATTGCTGGCATCCCGCAATCCATCATTGAGTGTGTGAAACAG
ATCTGCGTGGTCATGTTGGAGTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAG
CCGTCCAGTTCTCCGGTCATCTTTGCAGGTGGTCAGGACAGGTACAGCACAGGCAGCGAC
AGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGGACCA
CCTCTAGAGGCCTATACCATTCAAGGACAGTATGCCATTCCACAGCCAGATTTGACCAAG
CTGCACCAGTTGGCAATGCAACAGTCTCATTTTCCCATGACGCATGGCAACACCGGATTC
AGTGCAGGTTTGGATGCATCTGCTCAGACTACTTCTCATGAACTCACCATTCCAAACGAT
GCTCAGACTACTTCTCATGAACTCACCATTCCAAACGATTTGATTGGCTGCATAATCGGG
CGTCAAGGCGCCAAAATCAATGAGATCCGTCAGATGTCTGGGGCGCAGATCAAAATTGCG
AACCCAGTGGAAGGATCTACTGATAGGCAGGTTACCATCACTGGATCTGCTGCCAGCATT
AGCCTGGCTCAATATCTAATCAATGTCAGGCTTTCCTCGGAGACGGGTGGCATGGGGAGC
AGCTAGAACAATGCAGATTCATCCATAATCCCTTTCTGCTGTTCACCACCACCCATGATC
CATCTGTGTAGTTTCTGAACAGTCAGCGATTCCAGGTTTTAAATAGTTTGTAAATTTTCA
GTTTCTACACACTTTATCATCCACTCGTGATTTTTTAATTAAAGCGTTTTAATTCCTTTC
TCTGTTCAGCTGTTAATGCTGAGATCCATATTTAGTTTTATAAGCTTCTCCCGTTTTTTT
AAATGTAAGAGTGGAATATTAATACATTTCAGTTTAGTTCTGTAATGTCAGGAATTTTTC
AAAAAAATTAAAAGATGGACTGGAGCTTTTTTCTTTGTGAATAGAAACTGGATGCCACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGCTCCCCTTTTCCCCCTCAGTCGCCTCGCGCCTGCAGTTTTTGGCTTTCACCCCCC
CACCAGTGACCAAAGACTTGACCACTCAAAGTCCAGCTCCCCAGAACACTGCTCGACATG
GACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACCATCCGGCTACTTATGCAT
GGAAAGGAAGTTGGCAGTATCATCGGAAAGAAAGGAGAATCGGTTAAGAAGATGCGAGAG
GAGAGTGGTGCACGTATCAACATCTCAGAAGGGAATTGTCCTGAGAGAATTATCACTTTG
GCTGGACCCACTAATGCCATCTTCAAAGCCTTTGCTATGATCATTGACAAACTGGAAGAG
GACATCAGCAGCTCTATGACCAATAGCACAGCTGCCAGTAGACCCCCAGTCACCCTGAGG
CTGGTGGTCCCTGCTAGTCAGTGTGGCTCTCTCATTGGGAAAGGTGGTTGCAAGATCAAA
GAGATTCGGGAGAGTACAGGAGCTCAGGTCCAGGTGGCAGGGGACATGCTCCCCAACTCC
ACTGAGCGGGCCATCACTATTGCTGGCATCCCGCAATCCATCATTGAGTGTGTGAAACAG
ATCTGCGTGGTCATGTTGGAGTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAG
CCGTCCAGTTCTCCGGTCATCTTTGCAGGTGGTCAGGACAGGTACAGCACAGGCAGCGAC
AGTGCGAGCTTTCCCCACACCACCCCGTCCATGTGCCTCAACCCTGACCTGGAGGGACCA
CCTCTAGAGGCCTATACCATTCAAGGACAGTATGCCATTCCACAGCCAGATTTGACCAAG
CTGCACCAGTTGGCAATGCAACAGTCTCATTTTCCCATGACGCATGGCAACACCGGATTC
AGTGCAGGTTTGGATGCATCTGCTCAGACTACTTCTCATGAACTCACCATTCCAAACGAT
GCTCAGACTACTTCTCATGAACTCACCATTCCAAACGATTTGATTGGCTGCATAATCGGG
CGTCAAGGCGCCAAAATCAATGAGATCCGTCAGATGTCTGGGGCGCAGATCAAAATTGCG
AACCCAGTGGAAGGATCTACTGATAGGCAGGTTACCATCACTGGATCTGCTGCCAGCATT
AGCCTGGCTCAATATCTAATCAATGTCAGGCTTTCCTCGGAGACGGGTGGCATGGGGAGC
AGCTAGAACAATGCAGATTCATCCATAATCCCTTTCTGCTGTTCACCACCACCCATGATC
CATCTGTGTAGTTTCTGAACAGTCAGCGATTCCAGGTTTTAAATAGTTTGTAAATTTTCA
GTTTCTACACACTTTATCATCCACTCGTGATTTTTTAATTAAAGCGTTTTAATTCCTTTC
TCTGTTCAGCTGTTAATGCTGAGATCCATATTTAGTTTTATAAGCTTCTCCCGTTTTTTT
AAATGTAAGAGTGGAATATTAATACATTTCAGTTTAGTTCTGTAATGTCAGGAATTTTTC
AAAAAAATTAAAAGATGGACTGGAGCTTTTTTCTTTGTGAATAGAAACTGGATGCCACAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6997239|ref|NP_035172.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6997239|ref|NP_035172.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1377-1470, + strand, RNAz p=0.8156

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1377-1470, + strand, RNAz p=0.8156

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               131-627, gnl|bosTau2|chr10 (24636977-24637450)
               

               
               131-627, gnl|Hg17|chr8 (75678967-75678525)
               

               
               131-627, gnl|Mm7|chrX (156994906-156995349)
               


               
               660-904, gnl|bosTau2|chr10 (24637462-24637688)
               


               
               1011-1470, gnl|bosTau2|chr10 (24637902-24638347)
               

               
               1011-1470, gnl|Hg17|chr8 (75678273-75677790)
               

               
               1011-1470, gnl|Mm7|chrX (156996060-156996498)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-627, gnl|bosTau2|chr10 (24636977-24637450)
               

               
               131-627, gnl|Hg17|chr8 (75678967-75678525)
               

               
               131-627, gnl|Mm7|chrX (156994906-156995349)
               


               
               660-904, gnl|bosTau2|chr10 (24637462-24637688)
               


               
               1011-1470, gnl|bosTau2|chr10 (24637902-24638347)
               

               
               1011-1470, gnl|Hg17|chr8 (75678273-75677790)
               

               
               1011-1470, gnl|Mm7|chrX (156996060-156996498)

Expressed library(ies): 51 entry(ies)

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Expressed library(ies): 51 entry(ies)

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               tes (0.831255)
               

               
               fcc (0.791139)
               

               
               col (0.585023)
               

               
               pty (0.570858)
               

               
               fty (0.527519)
               

               
               ese (0.506009)
               

               
               med (0.465008)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               nmm (0.398406)
               

               
               cov (0.396458)
               

               
               clu (0.358938)
               

               
               eye (0.341006)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               eli (0.303628)
               

               
               cst (0.280073)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

Expressed library(ies): 51 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.831255)
               

               
               fcc (0.791139)
               

               
               col (0.585023)
               

               
               pty (0.570858)
               

               
               fty (0.527519)
               

               
               ese (0.506009)
               

               
               med (0.465008)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               nmm (0.398406)
               

               
               cov (0.396458)
               

               
               clu (0.358938)
               

               
               eye (0.341006)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               eli (0.303628)
               

               
               cst (0.280073)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

	131-627, gnl\|bosTau2\|chr10 (24636977-24637450)
	131-627, gnl\|Hg17\|chr8 (75678967-75678525)
	131-627, gnl\|Mm7\|chrX (156994906-156995349)

	660-904, gnl\|bosTau2\|chr10 (24637462-24637688)

	1011-1470, gnl\|bosTau2\|chr10 (24637902-24638347)
	1011-1470, gnl\|Hg17\|chr8 (75678273-75677790)
	1011-1470, gnl\|Mm7\|chrX (156996060-156996498)

	tes (0.831255)
	fcc (0.791139)
	col (0.585023)
	pty (0.570858)
	fty (0.527519)
	ese (0.506009)
	med (0.465008)
	lnt (0.426925)
	amn (0.417711)
	nmm (0.398406)
	cov (0.396458)
	clu (0.358938)
	eye (0.341006)
	cty (0.31224)
	sme (0.305437)
	eli (0.303628)
	cst (0.280073)
	bla (0.248694)
	tra (0.246184)
	cly (0.241284)
	ebs (0.236602)
	ecc (0.23007)
	cbl (0.229595)
	ece (0.229305)
	mas (0.210305)
	eje (0.197668)
	ldo (0.194005)
	ton (0.1755)
	sin (0.174948)
	rec (0.17307)
	mcp (0.170648)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	mga (0.160205)
	tbr (0.154178)
	ctl (0.153069)
	cag (0.151194)
	spl (0.143184)
	che (0.136314)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	eep (0.122564)
	eru (0.120048)
	pgl (0.118483)
	jca (0.11396)