Non-Coding RNA Search

Ss1.1-Spl1-SPL01C040064.5

Sequence:


               
               AGCACCTGGAGCCTCCCAACTCAAGGACTCCTACCTGCCTCCCAGCCTCCAGCTATGGCC
TGCTGGCACCTGGCCCTCCTTCTGATTGGGGTCCTCCTGGAAGTCTCCCAGCCGGCCCTG
GCCCAGCGGAACTCACTGCTGGTCTTCCCAGGCCAAGTGGCCCAACTCTTGTGCATGCTC
AGCCCCCGTCATGCCACCGTTGGGGACTACGGCGTGTCTTGGTATCAGCAGCGGGCAGGG
AGTGCCCCCCGCTTGCTCCTCTACTACCGCTCAGAGGAGGACCACCACCGGCCCCCTGAC
ATCCCTGATCGCTTCTCAGCAGCCGCGGATGCCGCCCATAACTCCTGCATCCTGACCATC
AGCCCTGTGCAGCCTGAGGATGACGCCGATTATTACTGCTTCGTAGGCATCAAATCATAG
GGGGGGATGTGGGATGAGTGCCTCCCATCTGCCTTCTGCTTCTTTCCTGACCCTGGGACC
CTATCTTTCCCTGAGCCTTGATTTTCCTCTTCTGTAAAATGGGATAACAATATTCAACAT
GTCAAAAATAACTATTCAAAAAAAAACAAAAACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCACCTGGAGCCTCCCAACTCAAGGACTCCTACCTGCCTCCCAGCCTCCAGCTATGGCC
TGCTGGCACCTGGCCCTCCTTCTGATTGGGGTCCTCCTGGAAGTCTCCCAGCCGGCCCTG
GCCCAGCGGAACTCACTGCTGGTCTTCCCAGGCCAAGTGGCCCAACTCTTGTGCATGCTC
AGCCCCCGTCATGCCACCGTTGGGGACTACGGCGTGTCTTGGTATCAGCAGCGGGCAGGG
AGTGCCCCCCGCTTGCTCCTCTACTACCGCTCAGAGGAGGACCACCACCGGCCCCCTGAC
ATCCCTGATCGCTTCTCAGCAGCCGCGGATGCCGCCCATAACTCCTGCATCCTGACCATC
AGCCCTGTGCAGCCTGAGGATGACGCCGATTATTACTGCTTCGTAGGCATCAAATCATAG
GGGGGGATGTGGGATGAGTGCCTCCCATCTGCCTTCTGCTTCTTTCCTGACCCTGGGACC
CTATCTTTCCCTGAGCCTTGATTTTCCTCTTCTGTAAAATGGGATAACAATATTCAACAT
GTCAAAAATAACTATTCAAAAAAAAACAAAAACAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37183118|gb|AAQ89359.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37183118|gb|AAQ89359.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               181-300, - strand, RNAz p=0.516563

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               181-300, - strand, RNAz p=0.516563

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               102-553, gnl|bosTau2|chr17 (41446439-41445995)
               

               
               102-553, gnl|Hg17|chr22 (22419941-22419481)
               

               
               102-553, gnl|Mm7|chr10 (75604792-75605241)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-553, gnl|bosTau2|chr17 (41446439-41445995)
               

               
               102-553, gnl|Hg17|chr22 (22419941-22419481)
               

               
               102-553, gnl|Mm7|chr10 (75604792-75605241)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ill (0.351185)
               

               
               cag (0.302389)
               

               
               fty (0.17584)
               

               
               lnt (0.142308)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               cag (0.302389)
               

               
               fty (0.17584)
               

               
               lnt (0.142308)
               

               
               nbm (0.0993246)

	102-553, gnl\|bosTau2\|chr17 (41446439-41445995)
	102-553, gnl\|Hg17\|chr22 (22419941-22419481)
	102-553, gnl\|Mm7\|chr10 (75604792-75605241)

	ill (0.351185)
	cag (0.302389)
	fty (0.17584)
	lnt (0.142308)
	nbm (0.0993246)