Ss1.1-Spl1-SPL01C040081.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTAGTACCGCTTCGGGGCCTGCGGAAAAGGGGCGCCAAGAACTTTCCTTGCAGACTTC ATTCCTGCGGCTGGTGGCGGCAGCCGAGACGTCATGGATCTCAGCGAGCTGGAAAGAGAC AATACGGGCCGCTGTCGCCTGAACTCGCCTGTGCCCGCTGTGTGCCTCAAGGAACCCTGC GTCCTGGGCGTCGATGAAGCGGGCCGGGGCCCGGTGCTGGGCCCCATGGTCTATGCCATA TGCTATTGCCCTCTGTCCCGCCTGGCAGATCTGGAGGCCCTGAAAGTGGCAGATTCAAAG ACCCTGTCAGAGAGCGAGCGGGACAGGCTCTTTGCGAAAATGGAGGAGGACGGAGACTTT GTGGGCTGGGCATTGGACGTGCTATCTCCAAATCTCATCTCTACCAGCATGCTTGGGCGG GTTAAATACAATCTGAACTCTCTGTCCCATGATACAGCCACTGGGCTGGTGCAGTATGCA TTGGACCAGGGTGTGAAAGTGGCCCAGGTGTTTGTGGACACTGTGGGGCTCCCAGAGACA TACCAGGAGCGGTTGCAGCAGCGCTTTCCTGACATTGAGGTGACAGTCAAGGCCAAGGCA GATGCCCTCTACCCTGTGGTCAGCGCTGCCAGTATCTGTGCCAAGGTGGCTCGAGACCAG GCTGTGAGGAATTGGCAGTTTGTGGAGAAACTACAGGACCTGGACACTGATTATGGCTCA GGCTACCCCAATGATCCCAAGACCAAAGCTTGGTTGAGGAAGCACGTGGACCCTGTGTTC GGCTTCCCCCAGTTTGTCCGGTTCAGTTGGCGCACAGCCCAGAGCATCCTGGAGAAGGAG GCAGAAGATGTTACATGGGAGGACTCGCAGACAGGGGATCAGGAGGGACTCAGGAAGATC AAGTCCTACTTCAGCAAAAGCCCCCGAACCCACCCCTGCCCCCACCTCTCCCATCGGTAC TTCCAGGAGCGGGGCCTGGAGTCAGCCACCACTCTCTAGGAGCCAGCCCGTATCCCCTTT AGACGCCCCCCACCCCACCTCCCAGTTTGATTGATTAAAATTGTGTGAAGAGCCCTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTAGTACCGCTTCGGGGCCTGCGGAAAAGGGGCGCCAAGAACTTTCCTTGCAGACTTC ATTCCTGCGGCTGGTGGCGGCAGCCGAGACGTCATGGATCTCAGCGAGCTGGAAAGAGAC AATACGGGCCGCTGTCGCCTGAACTCGCCTGTGCCCGCTGTGTGCCTCAAGGAACCCTGC GTCCTGGGCGTCGATGAAGCGGGCCGGGGCCCGGTGCTGGGCCCCATGGTCTATGCCATA TGCTATTGCCCTCTGTCCCGCCTGGCAGATCTGGAGGCCCTGAAAGTGGCAGATTCAAAG ACCCTGTCAGAGAGCGAGCGGGACAGGCTCTTTGCGAAAATGGAGGAGGACGGAGACTTT GTGGGCTGGGCATTGGACGTGCTATCTCCAAATCTCATCTCTACCAGCATGCTTGGGCGG GTTAAATACAATCTGAACTCTCTGTCCCATGATACAGCCACTGGGCTGGTGCAGTATGCA TTGGACCAGGGTGTGAAAGTGGCCCAGGTGTTTGTGGACACTGTGGGGCTCCCAGAGACA TACCAGGAGCGGTTGCAGCAGCGCTTTCCTGACATTGAGGTGACAGTCAAGGCCAAGGCA GATGCCCTCTACCCTGTGGTCAGCGCTGCCAGTATCTGTGCCAAGGTGGCTCGAGACCAG GCTGTGAGGAATTGGCAGTTTGTGGAGAAACTACAGGACCTGGACACTGATTATGGCTCA GGCTACCCCAATGATCCCAAGACCAAAGCTTGGTTGAGGAAGCACGTGGACCCTGTGTTC GGCTTCCCCCAGTTTGTCCGGTTCAGTTGGCGCACAGCCCAGAGCATCCTGGAGAAGGAG GCAGAAGATGTTACATGGGAGGACTCGCAGACAGGGGATCAGGAGGGACTCAGGAAGATC AAGTCCTACTTCAGCAAAAGCCCCCGAACCCACCCCTGCCCCCACCTCTCCCATCGGTAC TTCCAGGAGCGGGGCCTGGAGTCAGCCACCACTCTCTAGGAGCCAGCCCGTATCCCCTTT AGACGCCCCCCACCCCACCTCCCAGTTTGATTGATTAAAATTGTGTGAAGAGCCCTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-221, gnl|bosTau2|chr7 (8493087-8493307) | |
| 1-221, gnl|Hg17|chr19 (12778395-12778615) | |
| 1-221, gnl|Mm7|chr8 (83552266-83552046) | |
| 290-420, gnl|bosTau2|chr7 (8493706-8493836) | |
| 290-420, gnl|canFam2|chr20 (52352089-52351952) | |
| 290-420, gnl|danRer3|chr1 (50964283-50964412) | |
| 290-420, gnl|echTel1|scaffold_288945 (40712-40590) | |
| 290-420, gnl|fr1|chrUn (289524251-289524381) | |
| 290-420, gnl|hg17|chr19 (12779012-12779146) | |
| 290-420, gnl|Hg17|chr19 (12779017-12779144) | |
| 290-420, gnl|loxAfr1|scaffold_154804 (997-1135) | |
| 290-420, gnl|mm7|chr8 (83551640-83551503) | |
| 290-420, gnl|Mm7|chr8 (83551633-83551503) | |
| 290-420, gnl|monDom2|scaffold_106 (3861127-3861276) | |
| 290-420, gnl|panTro1|chr20 (13316506-13316640) | |
| 290-420, gnl|rheMac2|chr19 (12469074-12469211) | |
| 290-420, gnl|rn3|chr19 (24850610-24850747) | |
| 290-420, gnl|tetNig1|chr18 (3600191-3600328) | |
| 505-647, gnl|bosTau2|chr7 (8495523-8495665) | |
| 505-647, gnl|Hg17|chr19 (12781882-12782024) | |
| 505-647, gnl|Mm7|chr8 (83546218-83546076) | |
| 857-1070, gnl|bosTau2|chr7 (8496996-8497206) | |
| 857-1070, gnl|canFam2|chr20 (52347800-52347535) | |
| 857-1070, gnl|echTel1|scaffold_288945 (40151-39907) | |
| 857-1070, gnl|hg17|chr19 (12785142-12785383) | |
| 857-1070, gnl|Hg17|chr19 (12785141-12785337) | |
| 857-1070, gnl|loxAfr1|scaffold_154804 (4206-4445) | |
| 857-1070, gnl|mm7|chr8 (83543977-83543746) | |
| 857-1070, gnl|Mm7|chr8 (83543976-83543799) | |
| 857-1070, gnl|panTro1|chr20 (13322629-13322870) | |
| 857-1070, gnl|rheMac2|chr19 (12474143-12474384) | |
| 857-1070, gnl|rn3|chr19 (24856467-24856694) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-221, gnl|bosTau2|chr7 (8493087-8493307) | |
| 1-221, gnl|Hg17|chr19 (12778395-12778615) | |
| 1-221, gnl|Mm7|chr8 (83552266-83552046) | |
| 290-420, gnl|bosTau2|chr7 (8493706-8493836) | |
| 290-420, gnl|canFam2|chr20 (52352089-52351952) | |
| 290-420, gnl|danRer3|chr1 (50964283-50964412) | |
| 290-420, gnl|echTel1|scaffold_288945 (40712-40590) | |
| 290-420, gnl|fr1|chrUn (289524251-289524381) | |
| 290-420, gnl|hg17|chr19 (12779012-12779146) | |
| 290-420, gnl|Hg17|chr19 (12779017-12779144) | |
| 290-420, gnl|loxAfr1|scaffold_154804 (997-1135) | |
| 290-420, gnl|mm7|chr8 (83551640-83551503) | |
| 290-420, gnl|Mm7|chr8 (83551633-83551503) | |
| 290-420, gnl|monDom2|scaffold_106 (3861127-3861276) | |
| 290-420, gnl|panTro1|chr20 (13316506-13316640) | |
| 290-420, gnl|rheMac2|chr19 (12469074-12469211) | |
| 290-420, gnl|rn3|chr19 (24850610-24850747) | |
| 290-420, gnl|tetNig1|chr18 (3600191-3600328) | |
| 505-647, gnl|bosTau2|chr7 (8495523-8495665) | |
| 505-647, gnl|Hg17|chr19 (12781882-12782024) | |
| 505-647, gnl|Mm7|chr8 (83546218-83546076) | |
| 857-1070, gnl|bosTau2|chr7 (8496996-8497206) | |
| 857-1070, gnl|canFam2|chr20 (52347800-52347535) | |
| 857-1070, gnl|echTel1|scaffold_288945 (40151-39907) | |
| 857-1070, gnl|hg17|chr19 (12785142-12785383) | |
| 857-1070, gnl|Hg17|chr19 (12785141-12785337) | |
| 857-1070, gnl|loxAfr1|scaffold_154804 (4206-4445) | |
| 857-1070, gnl|mm7|chr8 (83543977-83543746) | |
| 857-1070, gnl|Mm7|chr8 (83543976-83543799) | |
| 857-1070, gnl|panTro1|chr20 (13322629-13322870) | |
| 857-1070, gnl|rheMac2|chr19 (12474143-12474384) | |
| 857-1070, gnl|rn3|chr19 (24856467-24856694) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| mas (0.210305) | |
| col (0.195008) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| col (0.195008) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| eje (0.0988338) |