Ss1.1-Spl1-SPL01C050077.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGCGTCATCACTGGCCCTGCTGCTTCAAAAATTTGCAGTGACTTGAGATCATCCAGAG CACGACTGCTTGAACTGTTCACCGATTTGAGCTGTAATCCAGAAATGATGAAGAGTGCAG CGGATTCATATTTTTCACTTTTACAAGGTTTCATTAACTCGTTGGATGAGTCCACCCAAG AAAGCAAATTACGATATATTCAAAATTTCAAGTGGACCGATACCTTACAGGGGCAGGTGC CCAGTGCTCAGCAGGACGCTGTGTTTGAATTGATTTCCATGGGCTTCAATGTAGCTCTGT GGTATACCAAGTATGCTTCCAGACTGGCTGGAAAAGAAAACATAACAGAGGACGAAGCAA AAGAAGTCCATCGGAGCTTAAAAATTGCAGCTGGGATTTTTAAACATTTAAAGGAAAGTC ACATCGCAAAGCTCATCACACCTGCAGAAAAGGGGCGGGATCTGGAGGCTCGCCTCCTGG AAGCGTATATCATCCAGTGTCAGGCCGAAGCTCAAGAAGTAACCATTGCTCGAGCAATTG AGCTGAAGCACGCACCTGGCCTGATTGCTGCCCTGGCTTATGAAACAGCCAATTTCTATC AAAAAGCTGATCATACTTTATCCAGTTTGGAGCCTGCATACTCTGCTAAATGGAGAAAAT ACCTTCACCTGAAAATGTGTTTCTACACAGCCTACGTAAGTATGTTTAGCCCAGAAACAG TGTCCTGTACTGTCCCTCCGGCCCAAGCAATCAGGTTCCTGTCATCTCGCCAGACTCTTC ATTAGCCGTGAATAAATGGCCACTGGAACCTTCTGCAGACTTAGTGAGGATGCTCTCGTT TCATCCTGTTCTTGGAGGACGGTTACTGACTCTGATCTTAAGGCTTCCGGCACAGTCCGT CACCTGAGCTGGTGAGGAACCGTTCATGCGATTTCTTAAACCTTATAGACTGTTTCAAGC ACACTTGCCGAAGCCTGNGTGCAGTCTTGCACTGATGTAGACATTTAAAGTTTGAACGTT CTTTACGATTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGCGTCATCACTGGCCCTGCTGCTTCAAAAATTTGCAGTGACTTGAGATCATCCAGAG CACGACTGCTTGAACTGTTCACCGATTTGAGCTGTAATCCAGAAATGATGAAGAGTGCAG CGGATTCATATTTTTCACTTTTACAAGGTTTCATTAACTCGTTGGATGAGTCCACCCAAG AAAGCAAATTACGATATATTCAAAATTTCAAGTGGACCGATACCTTACAGGGGCAGGTGC CCAGTGCTCAGCAGGACGCTGTGTTTGAATTGATTTCCATGGGCTTCAATGTAGCTCTGT GGTATACCAAGTATGCTTCCAGACTGGCTGGAAAAGAAAACATAACAGAGGACGAAGCAA AAGAAGTCCATCGGAGCTTAAAAATTGCAGCTGGGATTTTTAAACATTTAAAGGAAAGTC ACATCGCAAAGCTCATCACACCTGCAGAAAAGGGGCGGGATCTGGAGGCTCGCCTCCTGG AAGCGTATATCATCCAGTGTCAGGCCGAAGCTCAAGAAGTAACCATTGCTCGAGCAATTG AGCTGAAGCACGCACCTGGCCTGATTGCTGCCCTGGCTTATGAAACAGCCAATTTCTATC AAAAAGCTGATCATACTTTATCCAGTTTGGAGCCTGCATACTCTGCTAAATGGAGAAAAT ACCTTCACCTGAAAATGTGTTTCTACACAGCCTACGTAAGTATGTTTAGCCCAGAAACAG TGTCCTGTACTGTCCCTCCGGCCCAAGCAATCAGGTTCCTGTCATCTCGCCAGACTCTTC ATTAGCCGTGAATAAATGGCCACTGGAACCTTCTGCAGACTTAGTGAGGATGCTCTCGTT TCATCCTGTTCTTGGAGGACGGTTACTGACTCTGATCTTAAGGCTTCCGGCACAGTCCGT CACCTGAGCTGGTGAGGAACCGTTCATGCGATTTCTTAAACCTTATAGACTGTTTCAAGC ACACTTGCCGAAGCCTGNGTGCAGTCTTGCACTGATGTAGACATTTAAAGTTTGAACGTT CTTTACGATTCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 39-150, gnl|bosTau2|chr16 (13286354-13286243) | |
| 39-150, gnl|canFam2|chr38 (19976418-19976531) | |
| 39-150, gnl|canFam2|chr38 (19976418-19976531) | |
| 39-150, gnl|danRer3|chr20 (55121847-55121734) | |
| 39-150, gnl|danRer3|chr20 (55121847-55121734) | |
| 39-150, gnl|dasNov1|scaffold_5551 (53033-53146) | |
| 39-150, gnl|dasNov1|scaffold_5551 (53033-53146) | |
| 39-150, gnl|echTel1|scaffold_284236 (57847-57747) | |
| 39-150, gnl|echTel1|scaffold_284236 (57847-57747) | |
| 39-150, gnl|fr1|chrUn (148346069-148346212) | |
| 39-150, gnl|fr1|chrUn (148346069-148346212) | |
| 39-150, gnl|galGal2|chr3 (14340083-14339971) | |
| 39-150, gnl|galGal2|chr3 (14340083-14339971) | |
| 39-150, gnl|hg17|chr1 (219280658-219280771) | |
| 39-150, gnl|Hg17|chr1 (219280660-219280771) | |
| 39-150, gnl|hg17|chr1_random (2283925-2284038) | |
| 39-150, gnl|loxAfr1|scaffold_18058 (9070-9183) | |
| 39-150, gnl|loxAfr1|scaffold_18058 (9070-9183) | |
| 39-150, gnl|mm7|chrUn_random (1345964-1345851) | |
| 39-150, gnl|mm7|chrUn_random (1345964-1345851) | |
| 39-150, gnl|Mm7|chrUn_random (1345960-1345849) | |
| 39-150, gnl|monDom2|scaffold_13 (29487483-29487596) | |
| 39-150, gnl|monDom2|scaffold_13 (29487483-29487596) | |
| 39-150, gnl|oryCun1|scaffold_195264 (1650-1759) | |
| 39-150, gnl|oryCun1|scaffold_195264 (1650-1759) | |
| 39-150, gnl|panTro1|chr1 (203138488-203138601) | |
| 39-150, gnl|panTro1|chr1 (203138488-203138601) | |
| 39-150, gnl|rheMac2|chr1 (147552307-147552194) | |
| 39-150, gnl|rheMac2|chr1 (147552307-147552194) | |
| 39-150, gnl|rn3|chr13 (99524421-99524308) | |
| 39-150, gnl|rn3|chr13 (99524421-99524308) | |
| 39-150, gnl|tetNig1|chr14 (1153744-1153882) | |
| 39-150, gnl|tetNig1|chr14 (1153744-1153882) | |
| 412-519, gnl|bosTau2|chr16 (17997387-17997280) | |
| 412-519, gnl|Hg17|chr1 (219287185-219287292) | |
| 412-519, gnl|Mm7|chrUn_random (1338521-1338414) | |
| 609-797, gnl|bosTau2|chr16 (17994669-17994482) | |
| 609-797, gnl|Hg17|chr1 (219290479-219290669) | |
| 609-797, gnl|Mm7|chrUn_random (1335949-1335738) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-150, gnl|bosTau2|chr16 (13286354-13286243) | |
| 39-150, gnl|canFam2|chr38 (19976418-19976531) | |
| 39-150, gnl|canFam2|chr38 (19976418-19976531) | |
| 39-150, gnl|danRer3|chr20 (55121847-55121734) | |
| 39-150, gnl|danRer3|chr20 (55121847-55121734) | |
| 39-150, gnl|dasNov1|scaffold_5551 (53033-53146) | |
| 39-150, gnl|dasNov1|scaffold_5551 (53033-53146) | |
| 39-150, gnl|echTel1|scaffold_284236 (57847-57747) | |
| 39-150, gnl|echTel1|scaffold_284236 (57847-57747) | |
| 39-150, gnl|fr1|chrUn (148346069-148346212) | |
| 39-150, gnl|fr1|chrUn (148346069-148346212) | |
| 39-150, gnl|galGal2|chr3 (14340083-14339971) | |
| 39-150, gnl|galGal2|chr3 (14340083-14339971) | |
| 39-150, gnl|hg17|chr1 (219280658-219280771) | |
| 39-150, gnl|Hg17|chr1 (219280660-219280771) | |
| 39-150, gnl|hg17|chr1_random (2283925-2284038) | |
| 39-150, gnl|loxAfr1|scaffold_18058 (9070-9183) | |
| 39-150, gnl|loxAfr1|scaffold_18058 (9070-9183) | |
| 39-150, gnl|mm7|chrUn_random (1345964-1345851) | |
| 39-150, gnl|mm7|chrUn_random (1345964-1345851) | |
| 39-150, gnl|Mm7|chrUn_random (1345960-1345849) | |
| 39-150, gnl|monDom2|scaffold_13 (29487483-29487596) | |
| 39-150, gnl|monDom2|scaffold_13 (29487483-29487596) | |
| 39-150, gnl|oryCun1|scaffold_195264 (1650-1759) | |
| 39-150, gnl|oryCun1|scaffold_195264 (1650-1759) | |
| 39-150, gnl|panTro1|chr1 (203138488-203138601) | |
| 39-150, gnl|panTro1|chr1 (203138488-203138601) | |
| 39-150, gnl|rheMac2|chr1 (147552307-147552194) | |
| 39-150, gnl|rheMac2|chr1 (147552307-147552194) | |
| 39-150, gnl|rn3|chr13 (99524421-99524308) | |
| 39-150, gnl|rn3|chr13 (99524421-99524308) | |
| 39-150, gnl|tetNig1|chr14 (1153744-1153882) | |
| 39-150, gnl|tetNig1|chr14 (1153744-1153882) | |
| 412-519, gnl|bosTau2|chr16 (17997387-17997280) | |
| 412-519, gnl|Hg17|chr1 (219287185-219287292) | |
| 412-519, gnl|Mm7|chrUn_random (1338521-1338414) | |
| 609-797, gnl|bosTau2|chr16 (17994669-17994482) | |
| 609-797, gnl|Hg17|chr1 (219290479-219290669) | |
| 609-797, gnl|Mm7|chrUn_random (1335949-1335738) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) | |
| ste (0.135208) |