Ss1.1-Spl1-SPL01C060078.5
|
AAAACAGCAACAAGCTGAGCTGCTGTGACAGAGGCAAACAAAATGGCGGCGCCGAAAGGG
AGCCTCTGGGTCCGGGCCCAACTGGGGCTCCTGCCGCTGCTGTTGCTGACCATGGCCCTG
GCCGGAGGCCCAGGGACTGCTTCCGCTGAAGCGTTTGACTCGGTCTTGGGTGATACGGCA
TCTTGTCACCGGGCCTGTCAGTTGACCTACCCCTTGCACACCTACCCCAAGGAGGAGGAG
TTGTACGCCTGTCAGAGAGGTTGCAGGCTGTTTTCCATTTGTCAGTTTGTGGATGATGGA
ATTGACTTAAATCGGACCAAACTGGAATGTGAATCTGCATGTACAGAAGCATATTCCCAA
TCTGATGAGCAATATGCCTGCCATCTTGGTTGCCAGAATCAGCTGCCATTCGCTGAGCTG
AGACAAGAGCAACTCATGTCCCTGATGCCAAAAATGCATCTACTCTTCCCTTTAACTCTG
GTGAGGTCATTCTGGAGTGACGTGATGGACTCGGCACAGAGCTTTATAACCTCTTCATGG
ACTTTTTATCTTCAAGCTGATGATGGGAAAATAGTTATCTTCCAGTCCAAGCCAGAAATC
CAGTATGCACCACAGTTGGAGCAGGAACCTACAAATTTGAAAGAATCGTCACTGAGCAAA
ATGTCCTCAGATTTGCAAATGAGAAGTTCACAAGCACACAGGAACTATCTTGAAGATGGA
GAAAACGATGGCTTTTTAAGATGCCTCTCTCTTAACTCTGGGTGGATTTTAACTATGACT
CTTGTCCTCTCCGTGATGGTATTGCTCTGGATTTGTTGTGCAACTGTTGCTACAGCTGTG
GAGCAGTATGTTCCCTCTGAGAAGCTGAGTATCTATGGTGACTTGGAATTTGTGAATGAA
CAAAAGCTAAACAGATATCCAGCTTCTTCTCTTGTGCTTGTTAGATCTAAAGCTGAAGAT
CATGACGAAGCAGGGCCATTACCTACAAAAGTGAATCTTGCTCATTCAGAAATTTAAGCT
TTTTTTTTTTTTTAAAGAAAAAATGTAATAGACATCTAAATTTCCATTCCTCATAGAGCT
TTTTAAGATGGTTTTGTTGGATATAGGGCTTAAAAATCACTATTAAATGCAAATAAAGTT
ACCCAAATCTGTGAAGACTGTATTTGCTGTAACTTTACCTATAATTTTTTTTCTAGTAAT
TTAAGAGAAGGATATTTGGGATTGTATTTTTATTTTACTAATCTCTGTAGCTATTGTAAT
TGTTATTTGCATTGTTTTTGTTTGTTTCTTTCTTAGTGAAATTCTAGGAGCTGAGCATTG
TCCTTCCCCACCTCCTGTGGTGATACTGTCAGTCACCAGCTGAATACTCAGTAGGATATG
ATGCTCCTACTCAGAAATGGCCCACAACCTGTAATTTGAAATGTAGCAGAAAATGCCCTT
TAATGACACTACATTTTCAGTTGTATGGAACTGAGATCATTAAAATTTTGTTTGAATAAT
AAAAAAAAAAAATTTGAGTTAATATACTCCTGATTTTCCAGATCTTCCCTTTCACTCCTA
CCCAGCCCAGAAAATAATTAGGACATGTTCTATGGCTATTTATTGAGCAAATTGAAACAA
AAATGATCTTCTCACAAGTGTGTTTTATGTTATTTTGCACAGGCAATAGATTTTTTTGGC
TGGATGTATCTTTCCAAAGAACCATTTTTCTCTGTTAGAAAGCATATGAAGTGTAAAAAA
TATTTTCATTGAGAGTAATTCTGTGAAACAGACTTAAGTAGAGATTTTACTTTGCAAAAA
CTATTGTTATCATCCCTTTATCATTATCAGTAATGCAGACACAAATATAAGAGCACATCA
GTCTTGACCCGATTCAGTGTCGTTTTACCATGAAATGTTAAATGACCTTGCAGACCTGTA
CGTCCTCACTCCGGGGGGCCTTCCTGGCAACTGCAGGAGTGCTGTTGGACTAAAGGGTGA
GTCACACGCTTACCTTCAGCCTGGTCATCAGCTTTCTCTGAGTCAAAAGAAAATACAATT
AACTAACCAAGTAAGGCTTTGGTCACAAAATAATAGGCTTTGGTTTTTTAAATAGTAGAT
TGTCTAGATTTGGAAGCTAGAGGGTTAGAAAGTGTGGAACACATCGAAATGGGGAAGAGA
AGGAGTCATTGTCTCTTTTTATGAGAAAACAGTTGTAAAACAAACGGAATGGATTGATTT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAACAGCAACAAGCTGAGCTGCTGTGACAGAGGCAAACAAAATGGCGGCGCCGAAAGGG
AGCCTCTGGGTCCGGGCCCAACTGGGGCTCCTGCCGCTGCTGTTGCTGACCATGGCCCTG
GCCGGAGGCCCAGGGACTGCTTCCGCTGAAGCGTTTGACTCGGTCTTGGGTGATACGGCA
TCTTGTCACCGGGCCTGTCAGTTGACCTACCCCTTGCACACCTACCCCAAGGAGGAGGAG
TTGTACGCCTGTCAGAGAGGTTGCAGGCTGTTTTCCATTTGTCAGTTTGTGGATGATGGA
ATTGACTTAAATCGGACCAAACTGGAATGTGAATCTGCATGTACAGAAGCATATTCCCAA
TCTGATGAGCAATATGCCTGCCATCTTGGTTGCCAGAATCAGCTGCCATTCGCTGAGCTG
AGACAAGAGCAACTCATGTCCCTGATGCCAAAAATGCATCTACTCTTCCCTTTAACTCTG
GTGAGGTCATTCTGGAGTGACGTGATGGACTCGGCACAGAGCTTTATAACCTCTTCATGG
ACTTTTTATCTTCAAGCTGATGATGGGAAAATAGTTATCTTCCAGTCCAAGCCAGAAATC
CAGTATGCACCACAGTTGGAGCAGGAACCTACAAATTTGAAAGAATCGTCACTGAGCAAA
ATGTCCTCAGATTTGCAAATGAGAAGTTCACAAGCACACAGGAACTATCTTGAAGATGGA
GAAAACGATGGCTTTTTAAGATGCCTCTCTCTTAACTCTGGGTGGATTTTAACTATGACT
CTTGTCCTCTCCGTGATGGTATTGCTCTGGATTTGTTGTGCAACTGTTGCTACAGCTGTG
GAGCAGTATGTTCCCTCTGAGAAGCTGAGTATCTATGGTGACTTGGAATTTGTGAATGAA
CAAAAGCTAAACAGATATCCAGCTTCTTCTCTTGTGCTTGTTAGATCTAAAGCTGAAGAT
CATGACGAAGCAGGGCCATTACCTACAAAAGTGAATCTTGCTCATTCAGAAATTTAAGCT
TTTTTTTTTTTTTAAAGAAAAAATGTAATAGACATCTAAATTTCCATTCCTCATAGAGCT
TTTTAAGATGGTTTTGTTGGATATAGGGCTTAAAAATCACTATTAAATGCAAATAAAGTT
ACCCAAATCTGTGAAGACTGTATTTGCTGTAACTTTACCTATAATTTTTTTTCTAGTAAT
TTAAGAGAAGGATATTTGGGATTGTATTTTTATTTTACTAATCTCTGTAGCTATTGTAAT
TGTTATTTGCATTGTTTTTGTTTGTTTCTTTCTTAGTGAAATTCTAGGAGCTGAGCATTG
TCCTTCCCCACCTCCTGTGGTGATACTGTCAGTCACCAGCTGAATACTCAGTAGGATATG
ATGCTCCTACTCAGAAATGGCCCACAACCTGTAATTTGAAATGTAGCAGAAAATGCCCTT
TAATGACACTACATTTTCAGTTGTATGGAACTGAGATCATTAAAATTTTGTTTGAATAAT
AAAAAAAAAAAATTTGAGTTAATATACTCCTGATTTTCCAGATCTTCCCTTTCACTCCTA
CCCAGCCCAGAAAATAATTAGGACATGTTCTATGGCTATTTATTGAGCAAATTGAAACAA
AAATGATCTTCTCACAAGTGTGTTTTATGTTATTTTGCACAGGCAATAGATTTTTTTGGC
TGGATGTATCTTTCCAAAGAACCATTTTTCTCTGTTAGAAAGCATATGAAGTGTAAAAAA
TATTTTCATTGAGAGTAATTCTGTGAAACAGACTTAAGTAGAGATTTTACTTTGCAAAAA
CTATTGTTATCATCCCTTTATCATTATCAGTAATGCAGACACAAATATAAGAGCACATCA
GTCTTGACCCGATTCAGTGTCGTTTTACCATGAAATGTTAAATGACCTTGCAGACCTGTA
CGTCCTCACTCCGGGGGGCCTTCCTGGCAACTGCAGGAGTGCTGTTGGACTAAAGGGTGA
GTCACACGCTTACCTTCAGCCTGGTCATCAGCTTTCTCTGAGTCAAAAGAAAATACAATT
AACTAACCAAGTAAGGCTTTGGTCACAAAATAATAGGCTTTGGTTTTTTAAATAGTAGAT
TGTCTAGATTTGGAAGCTAGAGGGTTAGAAAGTGTGGAACACATCGAAATGGGGAAGAGA
AGGAGTCATTGTCTCTTTTTATGAGAAAACAGTTGTAAAACAAACGGAATGGATTGATTT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
30-1155, gnl|bosTau2|chr13 (30295121-30296242) |
|
30-1155, gnl|Hg17|chr1 (54230894-54209709) |
|
30-1155, gnl|Mm7|chr4 (106555168-106577087) |
| |
|
1281-1529, gnl|bosTau2|chr14 (16307061-16306803) |
|
1281-1529, gnl|canFam2|chr29 (15683409-15683198) |
|
1281-1529, gnl|dasNov1|scaffold_6793 (6058-6310) |
|
1281-1529, gnl|hg17|chr3 (75265451-75265683) |
|
1281-1529, gnl|Hg17|chr8 (63508465-63508215) |
|
1281-1529, gnl|loxAfr1|scaffold_23666 (8061-8280) |
|
1281-1529, gnl|mm7|chr4 (106577212-106577426) |
|
1281-1529, gnl|Mm7|chr4 (106577203-106577423) |
|
1281-1529, gnl|oryCun1|scaffold_182486 (44815-44590) |
|
1281-1529, gnl|panTro1|chr2 (77292906-77293138) |
|
1281-1529, gnl|rheMac2|chr2 (61124564-61124333) |
|
1281-1529, gnl|rn3|chr4 (138515501-138515777) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
30-1155, gnl|bosTau2|chr13 (30295121-30296242) |
|
30-1155, gnl|Hg17|chr1 (54230894-54209709) |
|
30-1155, gnl|Mm7|chr4 (106555168-106577087) |
| |
|
1281-1529, gnl|bosTau2|chr14 (16307061-16306803) |
|
1281-1529, gnl|canFam2|chr29 (15683409-15683198) |
|
1281-1529, gnl|dasNov1|scaffold_6793 (6058-6310) |
|
1281-1529, gnl|hg17|chr3 (75265451-75265683) |
|
1281-1529, gnl|Hg17|chr8 (63508465-63508215) |
|
1281-1529, gnl|loxAfr1|scaffold_23666 (8061-8280) |
|
1281-1529, gnl|mm7|chr4 (106577212-106577426) |
|
1281-1529, gnl|Mm7|chr4 (106577203-106577423) |
|
1281-1529, gnl|oryCun1|scaffold_182486 (44815-44590) |
|
1281-1529, gnl|panTro1|chr2 (77292906-77293138) |
|
1281-1529, gnl|rheMac2|chr2 (61124564-61124333) |
|
1281-1529, gnl|rn3|chr4 (138515501-138515777) |
|
pro (4.09626) |
|
sug (3.05499) |
|
mga (2.08267) |
|
ret (2.05973) |
|
kid (1.94603) |
|
cbe (1.91388) |
|
sag (1.64444) |
|
mgp (1.61476) |
|
lyg (1.59723) |
|
rec (1.55763) |
|
tra (1.4771) |
|
ski (1.32062) |
|
liv (1.17027) |
|
bla (1.11912) |
|
mgm (1.08206) |
|
lun (1.05342) |
|
sin (1.04969) |
|
cmu (0.931966) |
|
tbr (0.925069) |
|
spl (0.859107) |
|
tes (0.831255) |
|
cbl (0.803582) |
|
spc (0.793561) |
|
lnt (0.711541) |
|
pgl (0.7109) |
|
cki (0.660939) |
|
aor (0.585823) |
|
lin (0.582411) |
|
nlu (0.575043) |
|
fbs (0.526039) |
|
cty (0.5204) |
|
ova (0.516529) |
|
eye (0.511509) |
|
eje (0.494169) |
|
ldo (0.485013) |
|
clu (0.478583) |
|
pan (0.471921) |
|
fco (0.471624) |
|
med (0.465008) |
|
csk (0.422238) |
|
ssp (0.406559) |
|
sto (0.359648) |
|
gul (0.355177) |
|
jca (0.34188) |
|
fhi (0.339155) |
|
cje (0.330469) |
|
isp (0.300752) |
|
cte (0.29274) |
|
cst (0.280073) |
|
ste (0.270416) |
|
ute (0.265569) |
|
thg (0.253582) |
|
mas (0.210305) |
|
jej (0.197844) |
|
col (0.195008) |
|
nep (0.183925) |
|
ill (0.175593) |
|
ton (0.1755) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
nco (0.161734) |
|
eli (0.151814) |
|
cag (0.151194) |
|
fat (0.147427) |
|
pty (0.142714) |
|
nca (0.136874) |
|
che (0.136314) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
eep (0.122564) |
|
cly (0.120642) |
|
ecc (0.115035) |
|
pro (4.09626) |
|
sug (3.05499) |
|
mga (2.08267) |
|
ret (2.05973) |
|
kid (1.94603) |
|
cbe (1.91388) |
|
sag (1.64444) |
|
mgp (1.61476) |
|
lyg (1.59723) |
|
rec (1.55763) |
|
tra (1.4771) |
|
ski (1.32062) |
|
liv (1.17027) |
|
bla (1.11912) |
|
mgm (1.08206) |
|
lun (1.05342) |
|
sin (1.04969) |
|
cmu (0.931966) |
|
tbr (0.925069) |
|
spl (0.859107) |
|
tes (0.831255) |
|
cbl (0.803582) |
|
spc (0.793561) |
|
lnt (0.711541) |
|
pgl (0.7109) |
|
cki (0.660939) |
|
aor (0.585823) |
|
lin (0.582411) |
|
nlu (0.575043) |
|
fbs (0.526039) |
|
cty (0.5204) |
|
ova (0.516529) |
|
eye (0.511509) |
|
eje (0.494169) |
|
ldo (0.485013) |
|
clu (0.478583) |
|
pan (0.471921) |
|
fco (0.471624) |
|
med (0.465008) |
|
csk (0.422238) |
|
ssp (0.406559) |
|
sto (0.359648) |
|
gul (0.355177) |
|
jca (0.34188) |
|
fhi (0.339155) |
|
cje (0.330469) |
|
isp (0.300752) |
|
cte (0.29274) |
|
cst (0.280073) |
|
ste (0.270416) |
|
ute (0.265569) |
|
thg (0.253582) |
|
mas (0.210305) |
|
jej (0.197844) |
|
col (0.195008) |
|
nep (0.183925) |
|
ill (0.175593) |
|
ton (0.1755) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
nco (0.161734) |
|
eli (0.151814) |
|
cag (0.151194) |
|
fat (0.147427) |
|
pty (0.142714) |
|
nca (0.136874) |
|
che (0.136314) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
eep (0.122564) |
|
cly (0.120642) |
|
ecc (0.115035) |
