Ss1.1-Spl1-SPL01C070045.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAAGTCAGCCTTGAGAGGCAGAAGCACCCAGGACGGAGACGTGAACCACTGAATATCA AAATGACTGAAAAGGACCCAGAACCACACCTGGAGGAGGACGACGATGAGCTAGATGGCA AGCTCAATTATAAGCCTCCACCTCAGAAGTCCCTGAAGGAGCTGCAAGAGATGGACAAAG ATGATGAAAGTCTAACTAAGTACAAGAAAACGCTCCTGGGGGACGGTCCTGTAGTAGCAG ACCCTTCGGCCCCCAATGTCACTGTCACCCGCCTCACCCTGGTTTGTGAAAGTGCCCCAG GACCGATCACCATGGACCTCACGGGGGATCTGGAAGCCCTCAAAAAAGAAACTTTTGTGC TGAAGGAGGGGGTCGAATATAGAGTCAAAATTCACTTCAAAGTAAACAAGGATATTGTGT CAGGCCTGAAATATGTTCAACACACCTACCGGACTGGAGTGAAAGTGGATAAAGCAACAT TCATGGTTGGCAGCTACGGGCCTCGACCAGAGGAGTATGAATTTCTGACTCCAACCGAAG AGGCCCCCAAGGGCATGCTGGCCCGAGGCACCTACCACAACAAGTCCTTCTTTACCGATG ATGACAAGCACGACCACCTTACCTGGGAGTGGAACCTGTCCATTAAGAAGGACTGGACGG AATGAGCACCTCTGCCCATCCCTTCCCCTCACACTTGCCATCGGAAGAGCCCACAGTCAT GGTCGCCGCCCACTGCCCCATCCCTCCCCGCCTCACCATCGCGGCAGGGCCCCTTCCCCA GCACTCCCCTCCCTACGTTCCCACGTTCGTTATTGCTGCGTCCTCCTCTACACTGTCCCC CACCGTGCAACCTCCTCCCACCCCTGCACAAGATGCTTCTTCAAACCTGGGCTTTCATCC TGCCCCACCCTTCCGATCCCCTGTCATGGCCAGATTTCCGAAGTTCTTGGTCCCAACCTA AGATCATTTACTTTTTCCCTCTTTTATTCCCATTCAAGCAACTAGTAGCCAGGAAATGGG CAAGCTATCACTAGCAGTCCTTTGCCTTGGGTTCCAGGATCTCATTCCCACCCCTGGATT TTTCTGTGGTTGCTGCTGGCTCAGTGAAGGTCCTTAATCACATTTCCTGCTAACTGGGGT TCTGCCTTTCTGGGAGACACTGTAAACAGCACAAGGGAATCAGAATAAAAGAATTGTATG ATCTGAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAAGTCAGCCTTGAGAGGCAGAAGCACCCAGGACGGAGACGTGAACCACTGAATATCA AAATGACTGAAAAGGACCCAGAACCACACCTGGAGGAGGACGACGATGAGCTAGATGGCA AGCTCAATTATAAGCCTCCACCTCAGAAGTCCCTGAAGGAGCTGCAAGAGATGGACAAAG ATGATGAAAGTCTAACTAAGTACAAGAAAACGCTCCTGGGGGACGGTCCTGTAGTAGCAG ACCCTTCGGCCCCCAATGTCACTGTCACCCGCCTCACCCTGGTTTGTGAAAGTGCCCCAG GACCGATCACCATGGACCTCACGGGGGATCTGGAAGCCCTCAAAAAAGAAACTTTTGTGC TGAAGGAGGGGGTCGAATATAGAGTCAAAATTCACTTCAAAGTAAACAAGGATATTGTGT CAGGCCTGAAATATGTTCAACACACCTACCGGACTGGAGTGAAAGTGGATAAAGCAACAT TCATGGTTGGCAGCTACGGGCCTCGACCAGAGGAGTATGAATTTCTGACTCCAACCGAAG AGGCCCCCAAGGGCATGCTGGCCCGAGGCACCTACCACAACAAGTCCTTCTTTACCGATG ATGACAAGCACGACCACCTTACCTGGGAGTGGAACCTGTCCATTAAGAAGGACTGGACGG AATGAGCACCTCTGCCCATCCCTTCCCCTCACACTTGCCATCGGAAGAGCCCACAGTCAT GGTCGCCGCCCACTGCCCCATCCCTCCCCGCCTCACCATCGCGGCAGGGCCCCTTCCCCA GCACTCCCCTCCCTACGTTCCCACGTTCGTTATTGCTGCGTCCTCCTCTACACTGTCCCC CACCGTGCAACCTCCTCCCACCCCTGCACAAGATGCTTCTTCAAACCTGGGCTTTCATCC TGCCCCACCCTTCCGATCCCCTGTCATGGCCAGATTTCCGAAGTTCTTGGTCCCAACCTA AGATCATTTACTTTTTCCCTCTTTTATTCCCATTCAAGCAACTAGTAGCCAGGAAATGGG CAAGCTATCACTAGCAGTCCTTTGCCTTGGGTTCCAGGATCTCATTCCCACCCCTGGATT TTTCTGTGGTTGCTGCTGGCTCAGTGAAGGTCCTTAATCACATTTCCTGCTAACTGGGGT TCTGCCTTTCTGGGAGACACTGTAAACAGCACAAGGGAATCAGAATAAAAGAATTGTATG ATCTGAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 464-583, + strand, RNAz p=0.637841 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 464-583, + strand, RNAz p=0.637841 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_004309, + |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 57-240, gnl|bosTau2|chr5 (57284097-57284280) | |
| 57-240, gnl|Hg17|chr12 (14994919-14994733) | |
| 57-240, gnl|Mm7|chr6 (136958323-136958140) | |
| 464-671, gnl|bosTau2|chr19 (45386357-45386150) | |
| 464-671, gnl|canFam2|chr9 (3422279-3422049) | |
| 464-671, gnl|canFam2|chr9 (3422279-3422057) | |
| 464-671, gnl|danRer3|chr17 (11007532-11007310) | |
| 464-671, gnl|danRer3|chr17 (11007532-11007304) | |
| 464-671, gnl|dasNov1|scaffold_2523 (45199-45424) | |
| 464-671, gnl|dasNov1|scaffold_2523 (45199-45419) | |
| 464-671, gnl|echTel1|scaffold_221646 (901-697) | |
| 464-671, gnl|echTel1|scaffold_221646 (900-697) | |
| 464-671, gnl|fr1|chrUn (128704738-128704509) | |
| 464-671, gnl|fr1|chrUn (128704738-128704509) | |
| 464-671, gnl|galGal2|chrUn (75824506-75824292) | |
| 464-671, gnl|galGal2|chrUn (75824506-75824286) | |
| 464-671, gnl|hg17|chr17 (77420037-77420269) | |
| 464-671, gnl|Hg17|chr17 (77420242-77420037) | |
| 464-671, gnl|hg17|chr17_random (1925918-1926151) | |
| 464-671, gnl|mm7|chr11 (120688272-120688502) | |
| 464-671, gnl|mm7|chr11 (120688272-120688494) | |
| 464-671, gnl|Mm7|chr11 (120688477-120688270) | |
| 464-671, gnl|monDom2|scaffold_18 (14753733-14753957) | |
| 464-671, gnl|monDom2|scaffold_18 (14753733-14753978) | |
| 464-671, gnl|oryCun1|scaffold_199142 (72389-72168) | |
| 464-671, gnl|oryCun1|scaffold_199142 (72389-72182) | |
| 464-671, gnl|panTro1|chr19 (81180497-81180728) | |
| 464-671, gnl|panTro1|chr19 (81180497-81180720) | |
| 464-671, gnl|rheMac2|chr16 (77293465-77293696) | |
| 464-671, gnl|rheMac2|chr16 (77293465-77293688) | |
| 464-671, gnl|rn3|chr10 (109983403-109983633) | |
| 464-671, gnl|rn3|chr10 (109983403-109983625) | |
| 464-671, gnl|tetNig1|chrUn_random (39534967-39535180) | |
| 464-671, gnl|tetNig1|chrUn_random (39534967-39535180) | |
| 464-671, gnl|xenTro1|scaffold_973 (166307-166074) | |
| 464-671, gnl|xenTro1|scaffold_973 (166299-166081) | |
| 868-1206, gnl|bosTau2|chr5 (57291920-57292241) | |
| 868-1206, gnl|canFam2|chr27 (34700352-34700080) | |
| 868-1206, gnl|dasNov1|scaffold_2523 (44654-44930) | |
| 868-1206, gnl|echTel1|scaffold_281891 (46876-47157) | |
| 868-1206, gnl|hg17|chr12 (14986184-14986460) | |
| 868-1206, gnl|Hg17|chr12 (14986558-14986222) | |
| 868-1206, gnl|mm7|chr6 (136948231-136948478) | |
| 868-1206, gnl|Mm7|chr6 (136948537-136948268) | |
| 868-1206, gnl|monDom2|scaffold_31 (11049679-11049361) | |
| 868-1206, gnl|panTro1|chrUn_random (41251706-41251982) | |
| 868-1206, gnl|rheMac2|chr11 (15319028-15319303) | |
| 868-1206, gnl|rn3|chr4 (174212933-174213171) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 57-240, gnl|bosTau2|chr5 (57284097-57284280) | |
| 57-240, gnl|Hg17|chr12 (14994919-14994733) | |
| 57-240, gnl|Mm7|chr6 (136958323-136958140) | |
| 464-671, gnl|bosTau2|chr19 (45386357-45386150) | |
| 464-671, gnl|canFam2|chr9 (3422279-3422049) | |
| 464-671, gnl|canFam2|chr9 (3422279-3422057) | |
| 464-671, gnl|danRer3|chr17 (11007532-11007310) | |
| 464-671, gnl|danRer3|chr17 (11007532-11007304) | |
| 464-671, gnl|dasNov1|scaffold_2523 (45199-45424) | |
| 464-671, gnl|dasNov1|scaffold_2523 (45199-45419) | |
| 464-671, gnl|echTel1|scaffold_221646 (901-697) | |
| 464-671, gnl|echTel1|scaffold_221646 (900-697) | |
| 464-671, gnl|fr1|chrUn (128704738-128704509) | |
| 464-671, gnl|fr1|chrUn (128704738-128704509) | |
| 464-671, gnl|galGal2|chrUn (75824506-75824292) | |
| 464-671, gnl|galGal2|chrUn (75824506-75824286) | |
| 464-671, gnl|hg17|chr17 (77420037-77420269) | |
| 464-671, gnl|Hg17|chr17 (77420242-77420037) | |
| 464-671, gnl|hg17|chr17_random (1925918-1926151) | |
| 464-671, gnl|mm7|chr11 (120688272-120688502) | |
| 464-671, gnl|mm7|chr11 (120688272-120688494) | |
| 464-671, gnl|Mm7|chr11 (120688477-120688270) | |
| 464-671, gnl|monDom2|scaffold_18 (14753733-14753957) | |
| 464-671, gnl|monDom2|scaffold_18 (14753733-14753978) | |
| 464-671, gnl|oryCun1|scaffold_199142 (72389-72168) | |
| 464-671, gnl|oryCun1|scaffold_199142 (72389-72182) | |
| 464-671, gnl|panTro1|chr19 (81180497-81180728) | |
| 464-671, gnl|panTro1|chr19 (81180497-81180720) | |
| 464-671, gnl|rheMac2|chr16 (77293465-77293696) | |
| 464-671, gnl|rheMac2|chr16 (77293465-77293688) | |
| 464-671, gnl|rn3|chr10 (109983403-109983633) | |
| 464-671, gnl|rn3|chr10 (109983403-109983625) | |
| 464-671, gnl|tetNig1|chrUn_random (39534967-39535180) | |
| 464-671, gnl|tetNig1|chrUn_random (39534967-39535180) | |
| 464-671, gnl|xenTro1|scaffold_973 (166307-166074) | |
| 464-671, gnl|xenTro1|scaffold_973 (166299-166081) | |
| 868-1206, gnl|bosTau2|chr5 (57291920-57292241) | |
| 868-1206, gnl|canFam2|chr27 (34700352-34700080) | |
| 868-1206, gnl|dasNov1|scaffold_2523 (44654-44930) | |
| 868-1206, gnl|echTel1|scaffold_281891 (46876-47157) | |
| 868-1206, gnl|hg17|chr12 (14986184-14986460) | |
| 868-1206, gnl|Hg17|chr12 (14986558-14986222) | |
| 868-1206, gnl|mm7|chr6 (136948231-136948478) | |
| 868-1206, gnl|Mm7|chr6 (136948537-136948268) | |
| 868-1206, gnl|monDom2|scaffold_31 (11049679-11049361) | |
| 868-1206, gnl|panTro1|chrUn_random (41251706-41251982) | |
| 868-1206, gnl|rheMac2|chr11 (15319028-15319303) | |
| 868-1206, gnl|rn3|chr4 (174212933-174213171) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| cly (2.05091) | |
| cbr (1.66368) | |
| med (1.62753) | |
| fty (1.58256) | |
| csp (1.45068) | |
| cag (1.20956) | |
| ill (1.05356) | |
| lnt (0.853849) | |
| clu (0.598229) | |
| nbm (0.595948) | |
| cty (0.41632) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| eli (0.151814) | |
| pty (0.142714) | |
| nca (0.136874) | |
| thg (0.126791) | |
| eep (0.122564) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (2.05091) | |
| cbr (1.66368) | |
| med (1.62753) | |
| fty (1.58256) | |
| csp (1.45068) | |
| cag (1.20956) | |
| ill (1.05356) | |
| lnt (0.853849) | |
| clu (0.598229) | |
| nbm (0.595948) | |
| cty (0.41632) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| eli (0.151814) | |
| pty (0.142714) | |
| nca (0.136874) | |
| thg (0.126791) | |
| eep (0.122564) | |
| jej (0.0989218) | |
| eje (0.0988338) |