Ss1.1-Spl1-SPL01C070047.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTGAGCCACTTAGTCCGCCCCGCCGCCTCCGCGATGGCTCCCGGCGCCACCCATCCTG GCCAGCTTGCGCTCCTGGCCCTGCTCCTGCCCCTGCTTGGGGCTCTGCTCCCAGGGCTTG GAGGTGCTGAAATCTCAATGTGGCCCCTAAACACCATCATACCCAAAGGAGGCTCCATGA AGGTGAACTGCAGTGTTGCCTGTGATGGAAACATCACCAGCTTTGGCCTAGAGACTCACT GGCACAAGACTGAAGTGGACCACAGAGACAAGTGGAAGATTTTTGAACTGAGTAATGTGG AAAACGATGGCACTCTACTCTGCCATGCAGTATGTCAGGGAAACCAGACACAAGTTCAAG GGAACCTCACCGTATACTGGTTCCCGGAGTATGTGAAACTGGCTAACTTGTCGTGGCAGC GCGAGGGCCAGCACTTCAACCTGAGCTGCCAAGTGTCAGGCGGCGCACCCCGGACCAACC TCTCTGCGGTGCTGTTCCGGGGGGAGGAGGAGCTGTTCAGGCAGTCAGTGGGGATGGAGG AGCCTGCCAATGTCACGTTCCGGATGCTGGCCAGCAGAAAGGACCACGGTGCCAATTTCT CTTGTCGCACTGAGCTGAACCTGCAGCCCCAGGGGCTGGAACTGTTTTGGAACAGCTCGG CCCCCTTGAAGCTCCAAACTTATGTCCTGCCAGCCACCCACCCACACCTTGCTACCCCTG AGCTTGTGGAAGTGGGCACACCCGTTTCTGTGAACTGTTCCTTGGATGGACTGTTCCCAG CCTCAGAGGCTACGGTCCACCTGGCGAGGGGGGACCACAGGCCGCCACTAACAATCACGC ATAATGGCGACTCCCTCCTGGCCGAGACCTGGATCAATGGAACCGAGAAGGAGCAGGGCA CCCAGTACCTGGTATGTGAGATAATGCTGGCAGACGAGAAGGTGGTGACAAAGAAGAATG TGACCTTCTACAGCTTCCCACCTCCCAACCTGACCCTGAGCGAGCCTGAGGTCTCAGAAG GGACTACAGTGAGCATAGAGTGCCAGGCCCACGGTGAAGCTGTGGTGACACTGAACGAGG TTCCAGCAGAGCCCCCCAGCCAGAGGGCCCAATTGAAGCTGAATGTCAGCGCTGAGGACC ATGGGCGAAGCTTCTCCTGCTCTGCTGCCCTGACGGTGGCTGGGCATGTGCTATACAAGA ACCAGACCCAGGTGCTCAGTGTCCTGTATGGACCCCGGCTAGACGAGAGGGATTGCCCAG GAAACTGGACGTGGCCAGAAGGCTCCCACCAGACCCTGACGTGCCAGGCCAGGGGGAACC CAACCCCCAAGCTGATCTGTCGCCGGGAAGGGGATGGGGCTTTGCTGCCCACCGGAGACC TGGGGCCTGTCAAGCGGGAGATTACAGGCACCTACCAATGTCAGGCCACCAGCTCTCGCG GTGTGGCCACCCGAGTCGTGGTCGTGAACGTGATCCACAACCAGAATAACATGGTCATCA TCATTCCGGTGGCAGCCGTGGCTATCTTGGGCAGTGTTGGCGTCGCCGCTTACATCTATA ACTACCAGCGGAAGATCCAGAAGTATGAGCTACAGAAGGCCCAGGAAAATGCAGCCATGA AACTTAGCACACCAGCCTCGCCGCCTTGAACCTGATCCAGGGCAGGACCTCCTCAGCACC CCCTCCCACACTGGGACGAGCGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTGAGCCACTTAGTCCGCCCCGCCGCCTCCGCGATGGCTCCCGGCGCCACCCATCCTG GCCAGCTTGCGCTCCTGGCCCTGCTCCTGCCCCTGCTTGGGGCTCTGCTCCCAGGGCTTG GAGGTGCTGAAATCTCAATGTGGCCCCTAAACACCATCATACCCAAAGGAGGCTCCATGA AGGTGAACTGCAGTGTTGCCTGTGATGGAAACATCACCAGCTTTGGCCTAGAGACTCACT GGCACAAGACTGAAGTGGACCACAGAGACAAGTGGAAGATTTTTGAACTGAGTAATGTGG AAAACGATGGCACTCTACTCTGCCATGCAGTATGTCAGGGAAACCAGACACAAGTTCAAG GGAACCTCACCGTATACTGGTTCCCGGAGTATGTGAAACTGGCTAACTTGTCGTGGCAGC GCGAGGGCCAGCACTTCAACCTGAGCTGCCAAGTGTCAGGCGGCGCACCCCGGACCAACC TCTCTGCGGTGCTGTTCCGGGGGGAGGAGGAGCTGTTCAGGCAGTCAGTGGGGATGGAGG AGCCTGCCAATGTCACGTTCCGGATGCTGGCCAGCAGAAAGGACCACGGTGCCAATTTCT CTTGTCGCACTGAGCTGAACCTGCAGCCCCAGGGGCTGGAACTGTTTTGGAACAGCTCGG CCCCCTTGAAGCTCCAAACTTATGTCCTGCCAGCCACCCACCCACACCTTGCTACCCCTG AGCTTGTGGAAGTGGGCACACCCGTTTCTGTGAACTGTTCCTTGGATGGACTGTTCCCAG CCTCAGAGGCTACGGTCCACCTGGCGAGGGGGGACCACAGGCCGCCACTAACAATCACGC ATAATGGCGACTCCCTCCTGGCCGAGACCTGGATCAATGGAACCGAGAAGGAGCAGGGCA CCCAGTACCTGGTATGTGAGATAATGCTGGCAGACGAGAAGGTGGTGACAAAGAAGAATG TGACCTTCTACAGCTTCCCACCTCCCAACCTGACCCTGAGCGAGCCTGAGGTCTCAGAAG GGACTACAGTGAGCATAGAGTGCCAGGCCCACGGTGAAGCTGTGGTGACACTGAACGAGG TTCCAGCAGAGCCCCCCAGCCAGAGGGCCCAATTGAAGCTGAATGTCAGCGCTGAGGACC ATGGGCGAAGCTTCTCCTGCTCTGCTGCCCTGACGGTGGCTGGGCATGTGCTATACAAGA ACCAGACCCAGGTGCTCAGTGTCCTGTATGGACCCCGGCTAGACGAGAGGGATTGCCCAG GAAACTGGACGTGGCCAGAAGGCTCCCACCAGACCCTGACGTGCCAGGCCAGGGGGAACC CAACCCCCAAGCTGATCTGTCGCCGGGAAGGGGATGGGGCTTTGCTGCCCACCGGAGACC TGGGGCCTGTCAAGCGGGAGATTACAGGCACCTACCAATGTCAGGCCACCAGCTCTCGCG GTGTGGCCACCCGAGTCGTGGTCGTGAACGTGATCCACAACCAGAATAACATGGTCATCA TCATTCCGGTGGCAGCCGTGGCTATCTTGGGCAGTGTTGGCGTCGCCGCTTACATCTATA ACTACCAGCGGAAGATCCAGAAGTATGAGCTACAGAAGGCCCAGGAAAATGCAGCCATGA AACTTAGCACACCAGCCTCGCCGCCTTGAACCTGATCCAGGGCAGGACCTCCTCAGCACC CCCTCCCACACTGGGACGAGCGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 383-483, - strand, RNAz p=0.872215 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 383-483, - strand, RNAz p=0.872215 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 379-684, gnl|bosTau2|chr7 (9525259-9524951) | |
| 379-684, gnl|canFam2|chr20 (53824993-53824654) | |
| 379-684, gnl|dasNov1|scaffold_105369 (366-30) | |
| 379-684, gnl|echTel1|scaffold_307784 (40099-39758) | |
| 379-684, gnl|hg17|chr19 (10255135-10255470) | |
| 379-684, gnl|Hg17|chr19 (10255157-10255462) | |
| 379-684, gnl|loxAfr1|scaffold_80405 (4095-3774) | |
| 379-684, gnl|mm7|chr9 (20902081-20902426) | |
| 379-684, gnl|Mm7|chr9 (20902102-20902416) | |
| 379-684, gnl|monDom2|scaffold_106 (1971556-1971906) | |
| 379-684, gnl|oryCun1|scaffold_140573 (9157-8816) | |
| 379-684, gnl|panTro1|chr20 (10640803-10641138) | |
| 379-684, gnl|rheMac2|chr19 (10096417-10096752) | |
| 379-684, gnl|rn3|chr8 (20048331-20048665) | |
| 1230-1476, gnl|bosTau2|chr7 (9523834-9523588) | |
| 1230-1476, gnl|Hg17|chr19 (10256461-10256704) | |
| 1230-1476, gnl|Mm7|chr9 (20903992-20904238) | |
| 1481-1682, gnl|bosTau2|chr7 (9523501-9523288) | |
| 1481-1682, gnl|canFam2|chr20 (53823250-53823063) | |
| 1481-1682, gnl|dasNov1|scaffold_236445 (4273-4070) | |
| 1481-1682, gnl|echTel1|scaffold_104634 (1872-2067) | |
| 1481-1682, gnl|hg17|chr19 (10256749-10256945) | |
| 1481-1682, gnl|Hg17|chr19 (10256795-10257000) | |
| 1481-1682, gnl|mm7|chr9 (20904289-20904486) | |
| 1481-1682, gnl|Mm7|chr9 (20904333-20904537) | |
| 1481-1682, gnl|monDom2|scaffold_106 (2007904-2007716) | |
| 1481-1682, gnl|panTro1|chr20 (10642417-10642613) | |
| 1481-1682, gnl|rheMac2|chr19 (10098014-10098210) | |
| 1481-1682, gnl|rn3|chr8 (20050790-20050987) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 379-684, gnl|bosTau2|chr7 (9525259-9524951) | |
| 379-684, gnl|canFam2|chr20 (53824993-53824654) | |
| 379-684, gnl|dasNov1|scaffold_105369 (366-30) | |
| 379-684, gnl|echTel1|scaffold_307784 (40099-39758) | |
| 379-684, gnl|hg17|chr19 (10255135-10255470) | |
| 379-684, gnl|Hg17|chr19 (10255157-10255462) | |
| 379-684, gnl|loxAfr1|scaffold_80405 (4095-3774) | |
| 379-684, gnl|mm7|chr9 (20902081-20902426) | |
| 379-684, gnl|Mm7|chr9 (20902102-20902416) | |
| 379-684, gnl|monDom2|scaffold_106 (1971556-1971906) | |
| 379-684, gnl|oryCun1|scaffold_140573 (9157-8816) | |
| 379-684, gnl|panTro1|chr20 (10640803-10641138) | |
| 379-684, gnl|rheMac2|chr19 (10096417-10096752) | |
| 379-684, gnl|rn3|chr8 (20048331-20048665) | |
| 1230-1476, gnl|bosTau2|chr7 (9523834-9523588) | |
| 1230-1476, gnl|Hg17|chr19 (10256461-10256704) | |
| 1230-1476, gnl|Mm7|chr9 (20903992-20904238) | |
| 1481-1682, gnl|bosTau2|chr7 (9523501-9523288) | |
| 1481-1682, gnl|canFam2|chr20 (53823250-53823063) | |
| 1481-1682, gnl|dasNov1|scaffold_236445 (4273-4070) | |
| 1481-1682, gnl|echTel1|scaffold_104634 (1872-2067) | |
| 1481-1682, gnl|hg17|chr19 (10256749-10256945) | |
| 1481-1682, gnl|Hg17|chr19 (10256795-10257000) | |
| 1481-1682, gnl|mm7|chr9 (20904289-20904486) | |
| 1481-1682, gnl|Mm7|chr9 (20904333-20904537) | |
| 1481-1682, gnl|monDom2|scaffold_106 (2007904-2007716) | |
| 1481-1682, gnl|panTro1|chr20 (10642417-10642613) | |
| 1481-1682, gnl|rheMac2|chr19 (10098014-10098210) | |
| 1481-1682, gnl|rn3|chr8 (20050790-20050987) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| clu (0.837521) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| cag (0.151194) | |
| cly (0.120642) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.837521) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| cag (0.151194) | |
| cly (0.120642) |