Ss1.1-Spl1-SPL01C070077.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGCCCGCTGGCCCCCGCCCGCAGCCCACCCGCCGCCCGGGTCATGGTGCTGGGCCGCG GGCTGCTCGGCCGTCGGAGCCTTGCTGCGCTGGGAGGTACCTGCGCCCGTCGCGGCTTGG GTCCAGCCCTGCTGGGACTCCTTCTCCATCACACAGACTCCAGGAAGAGCTTGACCGTGG AACAGGGCGCCATGAAGGTTGAATCGCTGCCTGCTCTGACCGACAATTACATGTACCTGG TCATTGATGATGACACCAAGGAGGCCGCCATTGTGGACCCAGTGCAGCCCCAGAAGGTTG TAGAAACGGTGAGAAAGCACGGGGTAAAGCTGACCACGGTGCTCACCACCCACCACCACT GGGACCACGCTGGTGGGAACGAGAAGCTGGTCAAGCTGGAGCCTGGGCTGAAGGTGTATG GGGGCGATGACCGGATCGGGGCTCTGACTCACAAGGTCACACACCTGTCCACACTGCAGG TGGGCTCTCTCAGCGTCAAGTGCCTGTCGACGCCGTGCCACACTTCGGGACACATCTGCT ACCTGGTGAGCAAGCCCGGCAGTTCCGAGCCCCCGGCCGTGTTCACAGGTGACACCTTGT TTGTGGCTGGCTGCGGGAAGTTCTACGAAGGGACAGCGGACGAGATGTACAAAGCCCTGC TCGAAGTCCTGGGCCGACTCCCTCCAGACACACGCGTGTACTGTGGCCACGAGTACACCG TCCATAACCTCAAGTTTGCGCGCCACGTGGAACCCGCCAACACCGCCATCCAGGAGAAGC TGGCCTGGGCCAAGGAGAAGCACAGCCTCGGGGAGCCCACGGTGCCGTCCACCATCGCGG AGGAGTTCACCTACAACCCGTTCATGCGAGTGAGGGAGAAGACAGTGCAGCAGCACGTGG GCGAGACGGACCCCGTGACCACCATGAGGGCCATCCGCAAGGAGAAGGACCACTTCAAGG TGCCCCGGGACTGAGGTGCCACCGCCGTCGCCACCTTCAAGCACACTCGGGTATTGGGAC GCGTTAGATGAATTTCCGGCTGGGGTGCAGGCCATGCAGCCTGTGTAATTTTAAATTAAT TTCAGAGCGCTTCGCCTGTGTTATCCAATGTTCTAATGCATATTTATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGCCCGCTGGCCCCCGCCCGCAGCCCACCCGCCGCCCGGGTCATGGTGCTGGGCCGCG GGCTGCTCGGCCGTCGGAGCCTTGCTGCGCTGGGAGGTACCTGCGCCCGTCGCGGCTTGG GTCCAGCCCTGCTGGGACTCCTTCTCCATCACACAGACTCCAGGAAGAGCTTGACCGTGG AACAGGGCGCCATGAAGGTTGAATCGCTGCCTGCTCTGACCGACAATTACATGTACCTGG TCATTGATGATGACACCAAGGAGGCCGCCATTGTGGACCCAGTGCAGCCCCAGAAGGTTG TAGAAACGGTGAGAAAGCACGGGGTAAAGCTGACCACGGTGCTCACCACCCACCACCACT GGGACCACGCTGGTGGGAACGAGAAGCTGGTCAAGCTGGAGCCTGGGCTGAAGGTGTATG GGGGCGATGACCGGATCGGGGCTCTGACTCACAAGGTCACACACCTGTCCACACTGCAGG TGGGCTCTCTCAGCGTCAAGTGCCTGTCGACGCCGTGCCACACTTCGGGACACATCTGCT ACCTGGTGAGCAAGCCCGGCAGTTCCGAGCCCCCGGCCGTGTTCACAGGTGACACCTTGT TTGTGGCTGGCTGCGGGAAGTTCTACGAAGGGACAGCGGACGAGATGTACAAAGCCCTGC TCGAAGTCCTGGGCCGACTCCCTCCAGACACACGCGTGTACTGTGGCCACGAGTACACCG TCCATAACCTCAAGTTTGCGCGCCACGTGGAACCCGCCAACACCGCCATCCAGGAGAAGC TGGCCTGGGCCAAGGAGAAGCACAGCCTCGGGGAGCCCACGGTGCCGTCCACCATCGCGG AGGAGTTCACCTACAACCCGTTCATGCGAGTGAGGGAGAAGACAGTGCAGCAGCACGTGG GCGAGACGGACCCCGTGACCACCATGAGGGCCATCCGCAAGGAGAAGGACCACTTCAAGG TGCCCCGGGACTGAGGTGCCACCGCCGTCGCCACCTTCAAGCACACTCGGGTATTGGGAC GCGTTAGATGAATTTCCGGCTGGGGTGCAGGCCATGCAGCCTGTGTAATTTTAAATTAAT TTCAGAGCGCTTCGCCTGTGTTATCCAATGTTCTAATGCATATTTATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 120-303, gnl|bosTau2|chr25 (3210661-3210841) | |
| 120-303, gnl|Hg17|chr16 (1813040-1812858) | |
| 120-303, gnl|Mm7|chr17 (23035383-23035568) | |
| 361-482, gnl|bosTau2|chr25 (3213351-3213472) | |
| 361-482, gnl|canFam2|chr6 (42133519-42133374) | |
| 361-482, gnl|danRer3|chr3 (9486356-9486495) | |
| 361-482, gnl|echTel1|scaffold_257216 (3081-2935) | |
| 361-482, gnl|fr1|chrUn (144220356-144220226) | |
| 361-482, gnl|galGal2|chr14 (8086146-8086278) | |
| 361-482, gnl|hg17|chr16 (1809892-1810037) | |
| 361-482, gnl|Hg17|chr16 (1810017-1809896) | |
| 361-482, gnl|mm7|chr17 (23039417-23039272) | |
| 361-482, gnl|Mm7|chr17 (23039290-23039425) | |
| 361-482, gnl|monDom2|scaffold_5 (121926037-121925890) | |
| 361-482, gnl|oryCun1|scaffold_210830 (78799-78923) | |
| 361-482, gnl|panTro1|chr18 (1894769-1894914) | |
| 361-482, gnl|rheMac2|chr20 (1806112-1806257) | |
| 361-482, gnl|rn3|chr10 (14109647-14109502) | |
| 361-482, gnl|tetNig1|chr3 (9071956-9071831) | |
| 361-482, gnl|xenTro1|scaffold_142 (1754624-1754764) | |
| 583-691, gnl|bosTau2|chr25 (3215370-3215478) | |
| 583-691, gnl|canFam2|chr6 (42137675-42137548) | |
| 583-691, gnl|danRer3|chr3 (9480275-9480376) | |
| 583-691, gnl|echTel1|scaffold_51037 (1237-1334) | |
| 583-691, gnl|fr1|chrUn (144220781-144220648) | |
| 583-691, gnl|galGal2|chr14 (8084715-8084822) | |
| 583-691, gnl|hg17|chr16 (1807142-1807269) | |
| 583-691, gnl|Hg17|chr16 (1807279-1807171) | |
| 583-691, gnl|loxAfr1|scaffold_156529 (998-891) | |
| 583-691, gnl|mm7|chr17 (23043778-23043652) | |
| 583-691, gnl|Mm7|chr17 (23043640-23043748) | |
| 583-691, gnl|monDom2|scaffold_5 (121930023-121929896) | |
| 583-691, gnl|oryCun1|scaffold_210830 (78304-78394) | |
| 583-691, gnl|panTro1|chr18 (1891875-1892002) | |
| 583-691, gnl|rheMac2|chr20 (1804147-1804274) | |
| 583-691, gnl|rn3|chr10 (14114051-14113934) | |
| 583-691, gnl|tetNig1|chr3 (9072441-9072333) | |
| 583-691, gnl|xenTro1|scaffold_142 (1752456-1752574) | |
| 696-798, gnl|bosTau2|chr25 (3215970-3216072) | |
| 696-798, gnl|canFam2|chr6 (42137995-42137870) | |
| 696-798, gnl|danRer3|chr3 (9478521-9478628) | |
| 696-798, gnl|dasNov1|scaffold_242766 (676-803) | |
| 696-798, gnl|echTel1|scaffold_51037 (1121-1236) | |
| 696-798, gnl|fr1|chrUn (144221092-144220981) | |
| 696-798, gnl|galGal2|chr14 (8084169-8084308) | |
| 696-798, gnl|hg17|chr16 (1806887-1807015) | |
| 696-798, gnl|Hg17|chr16 (1806993-1806891) | |
| 696-798, gnl|loxAfr1|scaffold_156529 (1636-1518) | |
| 696-798, gnl|mm7|chr17 (23044121-23043996) | |
| 696-798, gnl|Mm7|chr17 (23044016-23044118) | |
| 696-798, gnl|monDom2|scaffold_5 (121930739-121930618) | |
| 696-798, gnl|oryCun1|scaffold_210830 (78200-78297) | |
| 696-798, gnl|rheMac2|chr20 (1803891-1804019) | |
| 696-798, gnl|rn3|chr10 (14114440-14114311) | |
| 696-798, gnl|tetNig1|chr3 (9072614-9072494) | |
| 696-798, gnl|xenTro1|scaffold_142 (1752199-1752326) | |
| 873-1128, gnl|bosTau2|chr25 (3219916-3220156) | |
| 873-1128, gnl|Hg17|chr16 (1799386-1799136) | |
| 873-1128, gnl|Mm7|chr17 (23047035-23047260) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 120-303, gnl|bosTau2|chr25 (3210661-3210841) | |
| 120-303, gnl|Hg17|chr16 (1813040-1812858) | |
| 120-303, gnl|Mm7|chr17 (23035383-23035568) | |
| 361-482, gnl|bosTau2|chr25 (3213351-3213472) | |
| 361-482, gnl|canFam2|chr6 (42133519-42133374) | |
| 361-482, gnl|danRer3|chr3 (9486356-9486495) | |
| 361-482, gnl|echTel1|scaffold_257216 (3081-2935) | |
| 361-482, gnl|fr1|chrUn (144220356-144220226) | |
| 361-482, gnl|galGal2|chr14 (8086146-8086278) | |
| 361-482, gnl|hg17|chr16 (1809892-1810037) | |
| 361-482, gnl|Hg17|chr16 (1810017-1809896) | |
| 361-482, gnl|mm7|chr17 (23039417-23039272) | |
| 361-482, gnl|Mm7|chr17 (23039290-23039425) | |
| 361-482, gnl|monDom2|scaffold_5 (121926037-121925890) | |
| 361-482, gnl|oryCun1|scaffold_210830 (78799-78923) | |
| 361-482, gnl|panTro1|chr18 (1894769-1894914) | |
| 361-482, gnl|rheMac2|chr20 (1806112-1806257) | |
| 361-482, gnl|rn3|chr10 (14109647-14109502) | |
| 361-482, gnl|tetNig1|chr3 (9071956-9071831) | |
| 361-482, gnl|xenTro1|scaffold_142 (1754624-1754764) | |
| 583-691, gnl|bosTau2|chr25 (3215370-3215478) | |
| 583-691, gnl|canFam2|chr6 (42137675-42137548) | |
| 583-691, gnl|danRer3|chr3 (9480275-9480376) | |
| 583-691, gnl|echTel1|scaffold_51037 (1237-1334) | |
| 583-691, gnl|fr1|chrUn (144220781-144220648) | |
| 583-691, gnl|galGal2|chr14 (8084715-8084822) | |
| 583-691, gnl|hg17|chr16 (1807142-1807269) | |
| 583-691, gnl|Hg17|chr16 (1807279-1807171) | |
| 583-691, gnl|loxAfr1|scaffold_156529 (998-891) | |
| 583-691, gnl|mm7|chr17 (23043778-23043652) | |
| 583-691, gnl|Mm7|chr17 (23043640-23043748) | |
| 583-691, gnl|monDom2|scaffold_5 (121930023-121929896) | |
| 583-691, gnl|oryCun1|scaffold_210830 (78304-78394) | |
| 583-691, gnl|panTro1|chr18 (1891875-1892002) | |
| 583-691, gnl|rheMac2|chr20 (1804147-1804274) | |
| 583-691, gnl|rn3|chr10 (14114051-14113934) | |
| 583-691, gnl|tetNig1|chr3 (9072441-9072333) | |
| 583-691, gnl|xenTro1|scaffold_142 (1752456-1752574) | |
| 696-798, gnl|bosTau2|chr25 (3215970-3216072) | |
| 696-798, gnl|canFam2|chr6 (42137995-42137870) | |
| 696-798, gnl|danRer3|chr3 (9478521-9478628) | |
| 696-798, gnl|dasNov1|scaffold_242766 (676-803) | |
| 696-798, gnl|echTel1|scaffold_51037 (1121-1236) | |
| 696-798, gnl|fr1|chrUn (144221092-144220981) | |
| 696-798, gnl|galGal2|chr14 (8084169-8084308) | |
| 696-798, gnl|hg17|chr16 (1806887-1807015) | |
| 696-798, gnl|Hg17|chr16 (1806993-1806891) | |
| 696-798, gnl|loxAfr1|scaffold_156529 (1636-1518) | |
| 696-798, gnl|mm7|chr17 (23044121-23043996) | |
| 696-798, gnl|Mm7|chr17 (23044016-23044118) | |
| 696-798, gnl|monDom2|scaffold_5 (121930739-121930618) | |
| 696-798, gnl|oryCun1|scaffold_210830 (78200-78297) | |
| 696-798, gnl|rheMac2|chr20 (1803891-1804019) | |
| 696-798, gnl|rn3|chr10 (14114440-14114311) | |
| 696-798, gnl|tetNig1|chr3 (9072614-9072494) | |
| 696-798, gnl|xenTro1|scaffold_142 (1752199-1752326) | |
| 873-1128, gnl|bosTau2|chr25 (3219916-3220156) | |
| 873-1128, gnl|Hg17|chr16 (1799386-1799136) | |
| 873-1128, gnl|Mm7|chr17 (23047035-23047260) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| cli (0.458435) | |
| tes (0.415628) | |
| cov (0.396458) | |
| cag (0.302389) | |
| fce (0.271592) | |
| ute (0.265569) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| fli (0.202881) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| cki (0.165235) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| ste (0.135208) | |
| ese (0.126502) | |
| med (0.116252) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.458435) | |
| tes (0.415628) | |
| cov (0.396458) | |
| cag (0.302389) | |
| fce (0.271592) | |
| ute (0.265569) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| fli (0.202881) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| cki (0.165235) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| ste (0.135208) | |
| ese (0.126502) | |
| med (0.116252) |