Ss1.1-Spl1-SPL01C070103.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGAGCGAGCGCGCTCGGGACCGAGGACCGGCCATGGAGCGCGAAGTCCAGCGATTGC GCGCCGCGTTCCAGACGGGCCGATCGCGCCCTCTGGCCTTCCGGCTGCAGCAGCTCCAGG CCCTGCGCAGGATGGTGCAGGAGCGCGAGGAGGACCTGCTGGCGGCCATCGCCGCGGATC TGAGCAAGAGCAAACTCAATGCCTACAGTCAAGAAGTCCTTACGATTCTTGGGGAAATTG ATCTGGCGCTGGAGAAGCTTCCCGAATGGGCTGCAGCTCGGCCAGCGGAGAAGAACCTGC TAACCATGCTTGACGAGGCCTATGTCCAGCCAGAGCCCCTGGGTGTCATGCTGATCATTG GCGCGTGGAACTACCCCTTGGTTCTCTCCATCCAGCCTCTGATAGGAGCCATCGCTGCAG GAAACGCGGTGATTATCAAACCTTCCGAAATCAGCGAAAATACAGCCAAGATCTTGGCGA AGCTCCTCCCCCAGTATTTAGACCAGGACCTGTACGCTGTCATCAATGGCGGCGTCGAGG AAACCACGAAGCTGCTGGAGCAGCGATTTGACCACATTCTCTACACGGGAAGCACCGCGG TGGGGAAGATTGTCATGGAAGCCGCTGCCAAGCATTTGACCCCTGTGACCCTTGAACTGG GGGGGAAGAGCCCGTGTTACATTGACCCAGACTGTGACCTGGACGTCGCCTGCAGACGCA TCGCCTGGGGGAAGTACATGAACTGCGGGCAGACCTGCATCGCCCCCGACTACGTCCTCT GCGAGCCGTCCCTCCAGGACCAGGTCGTGCAGAAGACGAAGGAAGCCGTGAAGGAATTTT ATGGAGATAATATAAAAGACTCTCCGGACTATGAAAGGATCGTCAATCTCCGTCATTTCA AGAGGATACAGAGTCTGCTCGAGGGACAGAAGATAGCCTTCGGTGGGGAGACGGACGAGG CCACTCGCTACATAGCCCCAACAATACTTACCGATGTTGATCCTGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGAGCGAGCGCGCTCGGGACCGAGGACCGGCCATGGAGCGCGAAGTCCAGCGATTGC GCGCCGCGTTCCAGACGGGCCGATCGCGCCCTCTGGCCTTCCGGCTGCAGCAGCTCCAGG CCCTGCGCAGGATGGTGCAGGAGCGCGAGGAGGACCTGCTGGCGGCCATCGCCGCGGATC TGAGCAAGAGCAAACTCAATGCCTACAGTCAAGAAGTCCTTACGATTCTTGGGGAAATTG ATCTGGCGCTGGAGAAGCTTCCCGAATGGGCTGCAGCTCGGCCAGCGGAGAAGAACCTGC TAACCATGCTTGACGAGGCCTATGTCCAGCCAGAGCCCCTGGGTGTCATGCTGATCATTG GCGCGTGGAACTACCCCTTGGTTCTCTCCATCCAGCCTCTGATAGGAGCCATCGCTGCAG GAAACGCGGTGATTATCAAACCTTCCGAAATCAGCGAAAATACAGCCAAGATCTTGGCGA AGCTCCTCCCCCAGTATTTAGACCAGGACCTGTACGCTGTCATCAATGGCGGCGTCGAGG AAACCACGAAGCTGCTGGAGCAGCGATTTGACCACATTCTCTACACGGGAAGCACCGCGG TGGGGAAGATTGTCATGGAAGCCGCTGCCAAGCATTTGACCCCTGTGACCCTTGAACTGG GGGGGAAGAGCCCGTGTTACATTGACCCAGACTGTGACCTGGACGTCGCCTGCAGACGCA TCGCCTGGGGGAAGTACATGAACTGCGGGCAGACCTGCATCGCCCCCGACTACGTCCTCT GCGAGCCGTCCCTCCAGGACCAGGTCGTGCAGAAGACGAAGGAAGCCGTGAAGGAATTTT ATGGAGATAATATAAAAGACTCTCCGGACTATGAAAGGATCGTCAATCTCCGTCATTTCA AGAGGATACAGAGTCTGCTCGAGGGACAGAAGATAGCCTTCGGTGGGGAGACGGACGAGG CCACTCGCTACATAGCCCCAACAATACTTACCGATGTTGATCCTGAAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 187-421, gnl|bosTau2|chr19 (24656929-24656695) | |
| 187-421, gnl|Hg17|chr17 (19495450-19495684) | |
| 187-421, gnl|Mm7|chr11 (61346855-61346621) | |
| 504-713, gnl|bosTau2|chr19 (24654880-24654671) | |
| 504-713, gnl|canFam2|chr5 (43532374-43532135) | |
| 504-713, gnl|danRer3|chr15 (25307279-25307498) | |
| 504-713, gnl|dasNov1|scaffold_21491 (37326-37563) | |
| 504-713, gnl|echTel1|scaffold_280608 (87467-87224) | |
| 504-713, gnl|fr1|chrUn (44095004-44094765) | |
| 504-713, gnl|galGal2|chr19 (6417214-6417454) | |
| 504-713, gnl|hg17|chr17 (19500245-19500489) | |
| 504-713, gnl|Hg17|chr17 (19500268-19500477) | |
| 504-713, gnl|loxAfr1|scaffold_21252 (5421-5670) | |
| 504-713, gnl|mm7|chr11 (61344009-61343769) | |
| 504-713, gnl|Mm7|chr11 (61343988-61343779) | |
| 504-713, gnl|monDom2|scaffold_86 (4800150-4799906) | |
| 504-713, gnl|panTro1|chr19 (19828690-19828934) | |
| 504-713, gnl|rheMac2|chr16 (19169471-19169715) | |
| 504-713, gnl|rn3|chr10 (47429882-47429640) | |
| 504-713, gnl|tetNig1|chr16 (8358822-8358588) | |
| 504-713, gnl|xenTro1|scaffold_38 (1193597-1193361) | |
| 832-975, gnl|bosTau2|chr19 (24652030-24651887) | |
| 832-975, gnl|canFam2|chr5 (43528733-43528580) | |
| 832-975, gnl|danRer3|chr15 (25308426-25308572) | |
| 832-975, gnl|dasNov1|scaffold_21491 (40869-41022) | |
| 832-975, gnl|echTel1|scaffold_280608 (83739-83586) | |
| 832-975, gnl|fr1|chrUn (44094359-44094211) | |
| 832-975, gnl|galGal2|chr19 (6417838-6417984) | |
| 832-975, gnl|hg17|chr17 (19505030-19505183) | |
| 832-975, gnl|Hg17|chr17 (19505030-19505173) | |
| 832-975, gnl|loxAfr1|scaffold_21252 (9091-9244) | |
| 832-975, gnl|mm7|chr11 (61338442-61338289) | |
| 832-975, gnl|Mm7|chr11 (61338440-61338297) | |
| 832-975, gnl|monDom2|scaffold_86 (4788452-4788300) | |
| 832-975, gnl|oryCun1|scaffold_177937 (49253-49100) | |
| 832-975, gnl|panTro1|chr19 (19833470-19833623) | |
| 832-975, gnl|rheMac2|chr16 (19174582-19174735) | |
| 832-975, gnl|rn3|chr10 (47424925-47424771) | |
| 832-975, gnl|tetNig1|chr16 (8358292-8358145) | |
| 832-975, gnl|xenTro1|scaffold_38 (1192369-1192217) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 187-421, gnl|bosTau2|chr19 (24656929-24656695) | |
| 187-421, gnl|Hg17|chr17 (19495450-19495684) | |
| 187-421, gnl|Mm7|chr11 (61346855-61346621) | |
| 504-713, gnl|bosTau2|chr19 (24654880-24654671) | |
| 504-713, gnl|canFam2|chr5 (43532374-43532135) | |
| 504-713, gnl|danRer3|chr15 (25307279-25307498) | |
| 504-713, gnl|dasNov1|scaffold_21491 (37326-37563) | |
| 504-713, gnl|echTel1|scaffold_280608 (87467-87224) | |
| 504-713, gnl|fr1|chrUn (44095004-44094765) | |
| 504-713, gnl|galGal2|chr19 (6417214-6417454) | |
| 504-713, gnl|hg17|chr17 (19500245-19500489) | |
| 504-713, gnl|Hg17|chr17 (19500268-19500477) | |
| 504-713, gnl|loxAfr1|scaffold_21252 (5421-5670) | |
| 504-713, gnl|mm7|chr11 (61344009-61343769) | |
| 504-713, gnl|Mm7|chr11 (61343988-61343779) | |
| 504-713, gnl|monDom2|scaffold_86 (4800150-4799906) | |
| 504-713, gnl|panTro1|chr19 (19828690-19828934) | |
| 504-713, gnl|rheMac2|chr16 (19169471-19169715) | |
| 504-713, gnl|rn3|chr10 (47429882-47429640) | |
| 504-713, gnl|tetNig1|chr16 (8358822-8358588) | |
| 504-713, gnl|xenTro1|scaffold_38 (1193597-1193361) | |
| 832-975, gnl|bosTau2|chr19 (24652030-24651887) | |
| 832-975, gnl|canFam2|chr5 (43528733-43528580) | |
| 832-975, gnl|danRer3|chr15 (25308426-25308572) | |
| 832-975, gnl|dasNov1|scaffold_21491 (40869-41022) | |
| 832-975, gnl|echTel1|scaffold_280608 (83739-83586) | |
| 832-975, gnl|fr1|chrUn (44094359-44094211) | |
| 832-975, gnl|galGal2|chr19 (6417838-6417984) | |
| 832-975, gnl|hg17|chr17 (19505030-19505183) | |
| 832-975, gnl|Hg17|chr17 (19505030-19505173) | |
| 832-975, gnl|loxAfr1|scaffold_21252 (9091-9244) | |
| 832-975, gnl|mm7|chr11 (61338442-61338289) | |
| 832-975, gnl|Mm7|chr11 (61338440-61338297) | |
| 832-975, gnl|monDom2|scaffold_86 (4788452-4788300) | |
| 832-975, gnl|oryCun1|scaffold_177937 (49253-49100) | |
| 832-975, gnl|panTro1|chr19 (19833470-19833623) | |
| 832-975, gnl|rheMac2|chr16 (19174582-19174735) | |
| 832-975, gnl|rn3|chr10 (47424925-47424771) | |
| 832-975, gnl|tetNig1|chr16 (8358292-8358145) | |
| 832-975, gnl|xenTro1|scaffold_38 (1192369-1192217) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| clu (0.119646) |