Non-Coding RNA Search

Ss1.1-Spl1-SPL01C090080.5

Sequence:


               
               GGAAAATCCAGTCTCAACACCGTCATATTTACAGAACCTGACTTCTCGTACCTGGAAGCA
TTGGCTCCCTACCAGCCCTTGGCCATGAAATGCATATACTGCCCCATTGATACACGACTG
AATTTCATCCAAGTGTCAAAGCTGCTCAAAGAAGTGCAGCCCCTGCACGTGGTCTGCCCC
GAGCAGTACACCCAGCCGCCCCCAGCACAGTCCCACAGGATGGACCTGATGATCGACTGC
CAGCCGCCCGCCATGTCCTACCGGCGCGCCGAGGTCCTCGCCCTGCCCTTCAAGCGTCGG
TACGAGAAGATCGAAATCATGCCTGAGCTCGCAGACTCTCTGGTGCCCATGGAGATTAAG
CCTGGCATTTCCTTGGCCACCGTCTCAGCCGTGCTGCACACTAAAGATAACAAGCACGTT
CTTCAGCCCCCACCCAGGCCTGCCCAGCCCGTAGGCGGCAAGAAGAGAAAGCGGGCAAGT
GAGGAAGTCCCCGACTGCAAGGTTGTGAAGCCTTTGCTGAGTGGCTCCATCCCTGTGGAA
CAGTTTGTGCAGACCCTGGAGAAGCATGGCTTCAGTGATATTAAGGTGGAAGATACAGCC
AAGGGCCATATCGTCCTGCTCCAGGAAGCTGAGACACTCATCCAGATTGAGGAAGATTCG
ACCCACATCATCTGTGACAATGATGAGATGCTCCGGGTACGACTGAGGGACCTTGTCCTC
AAATTCCTACAGAAGTTCTAAGGGGCACACCTCGACCATCTCCCCGTCCCCGAGCCCTGC
AGTCCTTCACTCTGGCTGCCCCGTGCCCGGCTAAGGGGGCCCTACTGCAAGGCTGGTCTC
TGGGGTGGTTTCCCTGGCGTGAGAAATAAAGCAGCAGCCCTGGAGGGACGTTCTCAGGAG
GTACAGCCAGACTCTCCTGTCCAGCTTCCTCACACTGATGCAGGTGAGAGCTTTCCCCCT
GTCAACCTCAGACTCGTTTTCCTCCCGAGCCTAGCCCTCTTGGGTGCCAGCTGGGAAGAC
AGTGAGCTGGAGCAGCATGAGAGAGGCAGCTGCTTTCCAAGAGGCCAGGGTTGGAAGGGG
AGGTAAATAGATGATGATTTGTGGCCTATTTTTCATGCTTTCACAGGCCTCAGTTGAGGG
AACTAATCTTTGATTTTTGTTTTATTTACTTGTCTACAGTGCTGTACCTAGTCAGAAAGA
CGATCCCAAAATTAGTAGGAACCCATCTATTTGTATTTTATAATGTGAGCCCATTGTTAA
TAAAACTTATTTTGTATAGAAGTATGTATTTTCTGTGTTCTGTTGAACTTTGAACTTATG
TATTCATTTGGTATCTGAAAAATATTAAAATATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAATCCAGTCTCAACACCGTCATATTTACAGAACCTGACTTCTCGTACCTGGAAGCA
TTGGCTCCCTACCAGCCCTTGGCCATGAAATGCATATACTGCCCCATTGATACACGACTG
AATTTCATCCAAGTGTCAAAGCTGCTCAAAGAAGTGCAGCCCCTGCACGTGGTCTGCCCC
GAGCAGTACACCCAGCCGCCCCCAGCACAGTCCCACAGGATGGACCTGATGATCGACTGC
CAGCCGCCCGCCATGTCCTACCGGCGCGCCGAGGTCCTCGCCCTGCCCTTCAAGCGTCGG
TACGAGAAGATCGAAATCATGCCTGAGCTCGCAGACTCTCTGGTGCCCATGGAGATTAAG
CCTGGCATTTCCTTGGCCACCGTCTCAGCCGTGCTGCACACTAAAGATAACAAGCACGTT
CTTCAGCCCCCACCCAGGCCTGCCCAGCCCGTAGGCGGCAAGAAGAGAAAGCGGGCAAGT
GAGGAAGTCCCCGACTGCAAGGTTGTGAAGCCTTTGCTGAGTGGCTCCATCCCTGTGGAA
CAGTTTGTGCAGACCCTGGAGAAGCATGGCTTCAGTGATATTAAGGTGGAAGATACAGCC
AAGGGCCATATCGTCCTGCTCCAGGAAGCTGAGACACTCATCCAGATTGAGGAAGATTCG
ACCCACATCATCTGTGACAATGATGAGATGCTCCGGGTACGACTGAGGGACCTTGTCCTC
AAATTCCTACAGAAGTTCTAAGGGGCACACCTCGACCATCTCCCCGTCCCCGAGCCCTGC
AGTCCTTCACTCTGGCTGCCCCGTGCCCGGCTAAGGGGGCCCTACTGCAAGGCTGGTCTC
TGGGGTGGTTTCCCTGGCGTGAGAAATAAAGCAGCAGCCCTGGAGGGACGTTCTCAGGAG
GTACAGCCAGACTCTCCTGTCCAGCTTCCTCACACTGATGCAGGTGAGAGCTTTCCCCCT
GTCAACCTCAGACTCGTTTTCCTCCCGAGCCTAGCCCTCTTGGGTGCCAGCTGGGAAGAC
AGTGAGCTGGAGCAGCATGAGAGAGGCAGCTGCTTTCCAAGAGGCCAGGGTTGGAAGGGG
AGGTAAATAGATGATGATTTGTGGCCTATTTTTCATGCTTTCACAGGCCTCAGTTGAGGG
AACTAATCTTTGATTTTTGTTTTATTTACTTGTCTACAGTGCTGTACCTAGTCAGAAAGA
CGATCCCAAAATTAGTAGGAACCCATCTATTTGTATTTTATAATGTGAGCCCATTGTTAA
TAAAACTTATTTTGTATAGAAGTATGTATTTTCTGTGTTCTGTTGAACTTTGAACTTATG
TATTCATTTGGTATCTGAAAAATATTAAAATATATA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|1930149|gb|AAB67601.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1930149|gb|AAB67601.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               157-327, gnl|bosTau2|chr8 (4781684-4781854)
               

               
               157-327, gnl|Hg17|chr8 (28689365-28689195)
               

               
               157-327, gnl|Mm7|chr14 (59893849-59894019)
               


               
               557-1354, gnl|bosTau2|chr8 (4789079-4789857)
               

               
               557-1354, gnl|Hg17|chr8 (28681766-28681030)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-327, gnl|bosTau2|chr8 (4781684-4781854)
               

               
               157-327, gnl|Hg17|chr8 (28689365-28689195)
               

               
               157-327, gnl|Mm7|chr14 (59893849-59894019)
               


               
               557-1354, gnl|bosTau2|chr8 (4789079-4789857)
               

               
               557-1354, gnl|Hg17|chr8 (28681766-28681030)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ton (0.1755)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	157-327, gnl\|bosTau2\|chr8 (4781684-4781854)
	157-327, gnl\|Hg17\|chr8 (28689365-28689195)
	157-327, gnl\|Mm7\|chr14 (59893849-59894019)

	557-1354, gnl\|bosTau2\|chr8 (4789079-4789857)
	557-1354, gnl\|Hg17\|chr8 (28681766-28681030)

	ton (0.1755)
	cut (0.169924)
	fhi (0.169578)
	cje (0.165235)
	cki (0.165235)
	lin (0.145603)
	hlv (0.139256)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	jca (0.11396)
	eje (0.0988338)