Ss1.1-Spl1-SPL01C100086.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCCGACGGGGAAGACGGCTCCCGGGCGGGGCAGGAGCCCGGGCCAGCGCCGGGGCCGG AGCCGGGAGAAGAGTTTGAGATCGTGGACCGGAGCCAGTTGCCGGGCCCAGGCGAGCAGC AGAGCGCAGCGAAGGCCCGGGCGGCGGCGGAAGGCTGGTCAGCCCCCATCCTGACCCTGG CGCGGAAAGCCACCGGCAACCTGTCGGCGAGCTGCGGGAGCGCGCTGCGCGCGGCCGCGG GGCTGAGCGGCGCGGATGGCGGCGCGGATGGCGCGGTGCGCGCAGCTTCCAAGAGCCAGA TGATGGAGGAGCGTGCCAACCTGATGCACATGATGAAACTCAGCATCAAGGTCTTGCTCC AGTCTGCCCTGAGCCTGGGCCGCAGCCTGGATGCCGACCATGCCCCTTTGCAGCAGTTCT TTGTAGTGATGGAGCACTGCCTCAAACATGGGCTGAAAGTTAAGAAGAGTTTTATTGGCC AAAATAAATCTTTCTTTGGTCCTTTGGAGCTGGTGGAGAAACTTTGTCCAGAAGCATCAG ATATAGCCACTAGTGTCAGAAATCTGCCAGAATTAAAGACAGCTGTGGGAAGGGGCAGAG CTTGGCTTTATCTTGCCCTCATGCAGAAGAAACTGGCAGATTATCTGAAAGTGCTTATAG ACAATAAACATCTCCTAAGTGAGTTCTATGAGCCTGAGGCCTTGCTGATGGAGGAAGAAG GGATGGTCATTGTTGGTCTGCTGGTGGGGCTCAACGTGCTTGATGCGAATCTCTGCTTAA AGGGAGAGGACTTGGACTCTCAGGTTGGAGTGATCGATTTTTCTCTCTACCTCAAGGATG TGCAGGATCTTGATGGTGGCAAAGAGCATGAAAGAATTACTGATGTCCTTGATCAAAAAA ATTACGTGGAAGAACTGAACCGGCACTTGAGCTGCACAGTCGGGGATCTTCAAACCAAGA TAGATGGCTTGGAAAAGACTAATTCAAAGCTGCAAGAAGAGCTTGCAGCTGCAACAGACC GGATTTGTTCACTTCAAGAAGAACAGCAACAATTGAGAGAACAAAACGAATTAATTCGTG AGAGAAGCGAGAAGCGAGTAGAGATAACAAAACAGGATACAAAAGTTGAGCTGGAGACTT ACAAGCAGACACGGCAAGGTCTGGACGAAATGTACAGTGATGTGTGGAAGCAGCTAAAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCCGACGGGGAAGACGGCTCCCGGGCGGGGCAGGAGCCCGGGCCAGCGCCGGGGCCGG AGCCGGGAGAAGAGTTTGAGATCGTGGACCGGAGCCAGTTGCCGGGCCCAGGCGAGCAGC AGAGCGCAGCGAAGGCCCGGGCGGCGGCGGAAGGCTGGTCAGCCCCCATCCTGACCCTGG CGCGGAAAGCCACCGGCAACCTGTCGGCGAGCTGCGGGAGCGCGCTGCGCGCGGCCGCGG GGCTGAGCGGCGCGGATGGCGGCGCGGATGGCGCGGTGCGCGCAGCTTCCAAGAGCCAGA TGATGGAGGAGCGTGCCAACCTGATGCACATGATGAAACTCAGCATCAAGGTCTTGCTCC AGTCTGCCCTGAGCCTGGGCCGCAGCCTGGATGCCGACCATGCCCCTTTGCAGCAGTTCT TTGTAGTGATGGAGCACTGCCTCAAACATGGGCTGAAAGTTAAGAAGAGTTTTATTGGCC AAAATAAATCTTTCTTTGGTCCTTTGGAGCTGGTGGAGAAACTTTGTCCAGAAGCATCAG ATATAGCCACTAGTGTCAGAAATCTGCCAGAATTAAAGACAGCTGTGGGAAGGGGCAGAG CTTGGCTTTATCTTGCCCTCATGCAGAAGAAACTGGCAGATTATCTGAAAGTGCTTATAG ACAATAAACATCTCCTAAGTGAGTTCTATGAGCCTGAGGCCTTGCTGATGGAGGAAGAAG GGATGGTCATTGTTGGTCTGCTGGTGGGGCTCAACGTGCTTGATGCGAATCTCTGCTTAA AGGGAGAGGACTTGGACTCTCAGGTTGGAGTGATCGATTTTTCTCTCTACCTCAAGGATG TGCAGGATCTTGATGGTGGCAAAGAGCATGAAAGAATTACTGATGTCCTTGATCAAAAAA ATTACGTGGAAGAACTGAACCGGCACTTGAGCTGCACAGTCGGGGATCTTCAAACCAAGA TAGATGGCTTGGAAAAGACTAATTCAAAGCTGCAAGAAGAGCTTGCAGCTGCAACAGACC GGATTTGTTCACTTCAAGAAGAACAGCAACAATTGAGAGAACAAAACGAATTAATTCGTG AGAGAAGCGAGAAGCGAGTAGAGATAACAAAACAGGATACAAAAGTTGAGCTGGAGACTT ACAAGCAGACACGGCAAGGTCTGGACGAAATGTACAGTGATGTGTGGAAGCAGCTAAAGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 276-474, gnl|bosTau2|chr28 (16902295-16902495) | |
| 276-474, gnl|canFam2|chr4 (22825547-22825770) | |
| 276-474, gnl|danRer3|chr13 (26503355-26503560) | |
| 276-474, gnl|dasNov1|scaffold_46346 (2782-2608) | |
| 276-474, gnl|echTel1|scaffold_289939 (47350-47573) | |
| 276-474, gnl|fr1|chrUn (109701370-109701583) | |
| 276-474, gnl|galGal2|chr6 (9906706-9906904) | |
| 276-474, gnl|hg17|chr10 (69834416-69834639) | |
| 276-474, gnl|Hg17|chr10 (69834617-69834417) | |
| 276-474, gnl|loxAfr1|scaffold_12744 (27597-27820) | |
| 276-474, gnl|mm7|chr10 (62501651-62501429) | |
| 276-474, gnl|Mm7|chr10 (62501446-62501648) | |
| 276-474, gnl|monDom2|scaffold_67 (9395107-9395311) | |
| 276-474, gnl|oryCun1|scaffold_209045 (25398-25179) | |
| 276-474, gnl|panTro1|chr8 (70863858-70864081) | |
| 276-474, gnl|rheMac2|chr9 (68846950-68846727) | |
| 276-474, gnl|rn3|chr20 (25337410-25337189) | |
| 276-474, gnl|tetNig1|chr5 (3677840-3677658) | |
| 276-474, gnl|xenTro1|scaffold_228 (878624-878404) | |
| 563-686, gnl|bosTau2|chr7 (232336-232460) | |
| 563-686, gnl|Hg17|chr5 (178927052-178927176) | |
| 563-686, gnl|Mm7|chr11 (50376495-50376371) | |
| 706-1065, gnl|bosTau2|chr19 (6527042-6527401) | |
| 706-1065, gnl|Hg17|chr5 (105780427-105780068) | |
| 706-1065, gnl|Mm7|chr5 (88567621-88572961) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 276-474, gnl|bosTau2|chr28 (16902295-16902495) | |
| 276-474, gnl|canFam2|chr4 (22825547-22825770) | |
| 276-474, gnl|danRer3|chr13 (26503355-26503560) | |
| 276-474, gnl|dasNov1|scaffold_46346 (2782-2608) | |
| 276-474, gnl|echTel1|scaffold_289939 (47350-47573) | |
| 276-474, gnl|fr1|chrUn (109701370-109701583) | |
| 276-474, gnl|galGal2|chr6 (9906706-9906904) | |
| 276-474, gnl|hg17|chr10 (69834416-69834639) | |
| 276-474, gnl|Hg17|chr10 (69834617-69834417) | |
| 276-474, gnl|loxAfr1|scaffold_12744 (27597-27820) | |
| 276-474, gnl|mm7|chr10 (62501651-62501429) | |
| 276-474, gnl|Mm7|chr10 (62501446-62501648) | |
| 276-474, gnl|monDom2|scaffold_67 (9395107-9395311) | |
| 276-474, gnl|oryCun1|scaffold_209045 (25398-25179) | |
| 276-474, gnl|panTro1|chr8 (70863858-70864081) | |
| 276-474, gnl|rheMac2|chr9 (68846950-68846727) | |
| 276-474, gnl|rn3|chr20 (25337410-25337189) | |
| 276-474, gnl|tetNig1|chr5 (3677840-3677658) | |
| 276-474, gnl|xenTro1|scaffold_228 (878624-878404) | |
| 563-686, gnl|bosTau2|chr7 (232336-232460) | |
| 563-686, gnl|Hg17|chr5 (178927052-178927176) | |
| 563-686, gnl|Mm7|chr11 (50376495-50376371) | |
| 706-1065, gnl|bosTau2|chr19 (6527042-6527401) | |
| 706-1065, gnl|Hg17|chr5 (105780427-105780068) | |
| 706-1065, gnl|Mm7|chr5 (88567621-88572961) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| mas (0.210305) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ese (0.126502) | |
| cly (0.120642) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ese (0.126502) | |
| cly (0.120642) |