Ss1.1-Spl1-SPL01C120030.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACACTCTCCCTGGCGGCACCCCTAGAGGCCTCTCCTCCGCCTTGAGGGCTCTGCTTGACT TCTCATCCCCGGGAGGAGAGCAAGGCCATGGGGCTGCCCCTGCTGCTGCCCCTGCTGCTG CCGCTGCTGCTGCTGCTGCCACCGGCATCTCTGCAGGGTGATCACTGGGCACAACTCAAA GCACGCTTTGACTATGGGATGAACCAGCCAACACAACTCTCAGCCCCTGAGGGTGGCTCC ATCCGCATCCCCTTCTTCTTCTACTACTCCCAGGACTCAGGCAGCGTTTCCAATGTGATA ATATCCTGGAGATGGAAACACTTCCATGGGGATTTCATCTACAAAACGACCCCCCGACTC ATCCATAATAACTTCAAGAACCGGCTCCTCCTGAACTGGGAAGAGGGTATGAAGAACGGC TCCCTCCAGATCTCGAACCTGCGGAGGGAGGACGAGGGTTTGTACTTCTGCCAAGTGGAG ATGATCACAGAGAAATACGGTGAACAGGAGTGGCAGTCCATCCAGGGGACCGAGCTCACG ATCACACACAACCAGACAACCATCCTGGGCTCCACCACCACTGCTGCCGCCACAGCTGGC CTCGGGACCTCAGAGGACCAAAGGCATTCCCCGAGTACGGAAGCTGCAGTGGGGATAGCA GCCAATGAGCTTATAATAGCAATTGCGGGACTGATTTTGTGCCTCTGATGGAAGAAGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACACTCTCCCTGGCGGCACCCCTAGAGGCCTCTCCTCCGCCTTGAGGGCTCTGCTTGACT TCTCATCCCCGGGAGGAGAGCAAGGCCATGGGGCTGCCCCTGCTGCTGCCCCTGCTGCTG CCGCTGCTGCTGCTGCTGCCACCGGCATCTCTGCAGGGTGATCACTGGGCACAACTCAAA GCACGCTTTGACTATGGGATGAACCAGCCAACACAACTCTCAGCCCCTGAGGGTGGCTCC ATCCGCATCCCCTTCTTCTTCTACTACTCCCAGGACTCAGGCAGCGTTTCCAATGTGATA ATATCCTGGAGATGGAAACACTTCCATGGGGATTTCATCTACAAAACGACCCCCCGACTC ATCCATAATAACTTCAAGAACCGGCTCCTCCTGAACTGGGAAGAGGGTATGAAGAACGGC TCCCTCCAGATCTCGAACCTGCGGAGGGAGGACGAGGGTTTGTACTTCTGCCAAGTGGAG ATGATCACAGAGAAATACGGTGAACAGGAGTGGCAGTCCATCCAGGGGACCGAGCTCACG ATCACACACAACCAGACAACCATCCTGGGCTCCACCACCACTGCTGCCGCCACAGCTGGC CTCGGGACCTCAGAGGACCAAAGGCATTCCCCGAGTACGGAAGCTGCAGTGGGGATAGCA GCCAATGAGCTTATAATAGCAATTGCGGGACTGATTTTGTGCCTCTGATGGAAGAAGAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 3-124, - strand, RNAz p=0.887917 | |
| 202-359, - strand, RNAz p=0.957071 | |
| 217-332, - strand, RNAz p=0.889859 | |
| 239-358, - strand, RNAz p=0.960364 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-124, - strand, RNAz p=0.887917 | |
| 202-359, - strand, RNAz p=0.957071 | |
| 217-332, - strand, RNAz p=0.889859 | |
| 239-358, - strand, RNAz p=0.960364 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 3-124, gnl|bosTau2|chr25 (32563036-32562919) | |
| 3-124, gnl|canFam2|chr6 (12295832-12295421) | |
| 3-124, gnl|canFam2|chr6 (12295820-12294894) | |
| 3-124, gnl|dasNov1|scaffold_23444 (22253-21874) | |
| 3-124, gnl|dasNov1|scaffold_23444 (22266-21399) | |
| 3-124, gnl|hg17|chr7 (99615721-99616117) | |
| 3-124, gnl|hg17|chr7 (99600361-99601303) | |
| 3-124, gnl|Hg17|chr7 (99615847-99615976) | |
| 3-124, gnl|mm7|chr5 (136754309-136753928) | |
| 3-124, gnl|mm7|chr5 (136776146-136775210) | |
| 3-124, gnl|Mm7|chr5 (136754169-136754055) | |
| 3-124, gnl|oryCun1|scaffold_177702 (47706-48100) | |
| 3-124, gnl|oryCun1|scaffold_177702 (47693-48615) | |
| 3-124, gnl|panTro1|chr6 (101399449-101399845) | |
| 3-124, gnl|panTro1|chr6 (101383056-101384019) | |
| 3-124, gnl|rheMac2|chr3 (47545045-47545452) | |
| 3-124, gnl|rheMac2|chr3 (47545032-47545981) | |
| 3-124, gnl|rn3|chr12 (19885918-19885538) | |
| 3-124, gnl|rn3|chr12 (19984501-19985417) | |
| 162-545, gnl|bosTau2|chr25 (32562590-32562207) | |
| 162-545, gnl|canFam2|chr6 (12295820-12294894) | |
| 162-545, gnl|canFam2|chr6 (12295420-12294894) | |
| 162-545, gnl|dasNov1|scaffold_23444 (22266-21399) | |
| 162-545, gnl|dasNov1|scaffold_23444 (21873-21399) | |
| 162-545, gnl|hg17|chr7 (99600361-99601303) | |
| 162-545, gnl|hg17|chr7 (99616118-99616657) | |
| 162-545, gnl|Hg17|chr7 (99616319-99616702) | |
| 162-545, gnl|mm7|chr5 (136776146-136775210) | |
| 162-545, gnl|mm7|chr5 (136753902-136753385) | |
| 162-545, gnl|Mm7|chr5 (136753722-136753338) | |
| 162-545, gnl|oryCun1|scaffold_119790 (7864-7341) | |
| 162-545, gnl|oryCun1|scaffold_177702 (47693-48615) | |
| 162-545, gnl|panTro1|chr6 (101383056-101384019) | |
| 162-545, gnl|panTro1|chr6 (101399846-101400385) | |
| 162-545, gnl|rheMac2|chr3 (47545032-47545981) | |
| 162-545, gnl|rheMac2|chr3 (47545453-47545981) | |
| 162-545, gnl|rn3|chr12 (19984501-19985417) | |
| 162-545, gnl|rn3|chr12 (19885515-19885015) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-124, gnl|bosTau2|chr25 (32563036-32562919) | |
| 3-124, gnl|canFam2|chr6 (12295832-12295421) | |
| 3-124, gnl|canFam2|chr6 (12295820-12294894) | |
| 3-124, gnl|dasNov1|scaffold_23444 (22253-21874) | |
| 3-124, gnl|dasNov1|scaffold_23444 (22266-21399) | |
| 3-124, gnl|hg17|chr7 (99615721-99616117) | |
| 3-124, gnl|hg17|chr7 (99600361-99601303) | |
| 3-124, gnl|Hg17|chr7 (99615847-99615976) | |
| 3-124, gnl|mm7|chr5 (136754309-136753928) | |
| 3-124, gnl|mm7|chr5 (136776146-136775210) | |
| 3-124, gnl|Mm7|chr5 (136754169-136754055) | |
| 3-124, gnl|oryCun1|scaffold_177702 (47706-48100) | |
| 3-124, gnl|oryCun1|scaffold_177702 (47693-48615) | |
| 3-124, gnl|panTro1|chr6 (101399449-101399845) | |
| 3-124, gnl|panTro1|chr6 (101383056-101384019) | |
| 3-124, gnl|rheMac2|chr3 (47545045-47545452) | |
| 3-124, gnl|rheMac2|chr3 (47545032-47545981) | |
| 3-124, gnl|rn3|chr12 (19885918-19885538) | |
| 3-124, gnl|rn3|chr12 (19984501-19985417) | |
| 162-545, gnl|bosTau2|chr25 (32562590-32562207) | |
| 162-545, gnl|canFam2|chr6 (12295820-12294894) | |
| 162-545, gnl|canFam2|chr6 (12295420-12294894) | |
| 162-545, gnl|dasNov1|scaffold_23444 (22266-21399) | |
| 162-545, gnl|dasNov1|scaffold_23444 (21873-21399) | |
| 162-545, gnl|hg17|chr7 (99600361-99601303) | |
| 162-545, gnl|hg17|chr7 (99616118-99616657) | |
| 162-545, gnl|Hg17|chr7 (99616319-99616702) | |
| 162-545, gnl|mm7|chr5 (136776146-136775210) | |
| 162-545, gnl|mm7|chr5 (136753902-136753385) | |
| 162-545, gnl|Mm7|chr5 (136753722-136753338) | |
| 162-545, gnl|oryCun1|scaffold_119790 (7864-7341) | |
| 162-545, gnl|oryCun1|scaffold_177702 (47693-48615) | |
| 162-545, gnl|panTro1|chr6 (101383056-101384019) | |
| 162-545, gnl|panTro1|chr6 (101399846-101400385) | |
| 162-545, gnl|rheMac2|chr3 (47545032-47545981) | |
| 162-545, gnl|rheMac2|chr3 (47545453-47545981) | |
| 162-545, gnl|rn3|chr12 (19984501-19985417) | |
| 162-545, gnl|rn3|chr12 (19885515-19885015) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) |