Non-Coding RNA Search

Ss1.1-Spl1-SPL01C120066.5

Sequence:


               
               CACACTGGATCCGGGAGCTGGTGCTGATAACAGCGGAATCCCCCGTCTACCTCTCTCCTT
GGTCCTGGAATTGCGCTACCGATCACCAAGTAGCCATAAGATATAATAAACCTTCAGCAC
TTGCTCAGTAGCTTTGCGAAAGTCTCAAGTAAAAGAGACATAAACAAAACAATTTTTTTT
GGTGTGAAGAACTCCAAAAATAAAATTCTCTAGGGATTTAAAAAAAAAAAAAAAACAGAA
AATGCCAGCTGATATAATGGAGAAAAATTCCTCGTCCCCGGTGGCTGCTACCCCAGCCAG
TGTCAACACGACACCGGATAAACCAAAGACAGCATCTGAGCACAGAAAGTCATCAAAGCC
CATCATGGAGAAAAGACGAAGAGCAAGAATAAATGAAAGTCTGAGCCAGCTGAAAACACT
GATTTTGGATGCTCTTAAAAAAGATAGCTCGAGGCATTCCAAGCTGGAGAAGGCGGACAT
TCTGGAAATGACAGTGAAGCACCTCCGGAACCTGCAGCGGGCGCAGATGACGGCCGCGCT
AAGCACAGACCCGAGCGTGCTGGGGAAGTACCGCGCCGGCTTCAGTGAGTGCATGAACGA
GGTGACCCGCTTCCTGTCCACGTGCGAGGGCGTTAACACCGAGGTGCGCACCCGGCTGCT
CGGCCACCTGGCCAACTGCATGACCCAGATCAACGCCATGACCTACCCTGGGCAGCCGCA
CCCAGCCTTGCAGGCGCCGCCACCGCCCCCGCCAGGACCCGGAGGTCCGCAGCACGCGCC
GTTCGCGCCGCCACCGCCACTGGTGCCCATCCCCGGGGGTGCGGCGCCCCCTCCCGGCGG
CGCGCCCTGCAAGCTGGGCAGCCCGGCTGGAGAGGCGGCAAAGGTATTCGGCGGCTTCCA
GGTGGTCCCGGCTCCCGATGGCCAGTTTGCCTTCCTCATCCCCAACGGGGCCTTCGCTCA
CAGCGGCCCGGTCATCCCAGTCTACACCAGCAACAGCGGGACCTCCGTGGGCCCCAACGC
AGTGTCGCCTTCCAGCGGCCCCTCGCTCACGGCGGACTCCATGTGGAGGCCTTGGCGGAA
CTGAGGGGCTCAAGCCACCCCTCCCCCCAAACTCCCCAGCCCACCTCTCTTCCCTTGGGA
CACTAAACAGGAACTTGGACTCTGGGAGAGGGGAGAGGACTTTTGTGATTAACTGGTTAC
TTTGGGGTTTTTTTTAATTTCTAAAGTTACTTTTTTTGTAGAGAAATGTATTAAGTGACT
GACCATGCACTATATTTGTACATATTTTATATGTTCATATTGGATTGCGCCTTTGTATTA
TAAAAGTTCAGATGACATTTCGTTTTTTACACGAGATTTCTTTTTTATGTGATGCCAAAG
ATGTTTGAAAATGCTCTTAAAATATCTTCCTTTGGGGAAGTTTATTTGAGAAAATATAAT
AAAAGAAAAAGAGTCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACACTGGATCCGGGAGCTGGTGCTGATAACAGCGGAATCCCCCGTCTACCTCTCTCCTT
GGTCCTGGAATTGCGCTACCGATCACCAAGTAGCCATAAGATATAATAAACCTTCAGCAC
TTGCTCAGTAGCTTTGCGAAAGTCTCAAGTAAAAGAGACATAAACAAAACAATTTTTTTT
GGTGTGAAGAACTCCAAAAATAAAATTCTCTAGGGATTTAAAAAAAAAAAAAAAACAGAA
AATGCCAGCTGATATAATGGAGAAAAATTCCTCGTCCCCGGTGGCTGCTACCCCAGCCAG
TGTCAACACGACACCGGATAAACCAAAGACAGCATCTGAGCACAGAAAGTCATCAAAGCC
CATCATGGAGAAAAGACGAAGAGCAAGAATAAATGAAAGTCTGAGCCAGCTGAAAACACT
GATTTTGGATGCTCTTAAAAAAGATAGCTCGAGGCATTCCAAGCTGGAGAAGGCGGACAT
TCTGGAAATGACAGTGAAGCACCTCCGGAACCTGCAGCGGGCGCAGATGACGGCCGCGCT
AAGCACAGACCCGAGCGTGCTGGGGAAGTACCGCGCCGGCTTCAGTGAGTGCATGAACGA
GGTGACCCGCTTCCTGTCCACGTGCGAGGGCGTTAACACCGAGGTGCGCACCCGGCTGCT
CGGCCACCTGGCCAACTGCATGACCCAGATCAACGCCATGACCTACCCTGGGCAGCCGCA
CCCAGCCTTGCAGGCGCCGCCACCGCCCCCGCCAGGACCCGGAGGTCCGCAGCACGCGCC
GTTCGCGCCGCCACCGCCACTGGTGCCCATCCCCGGGGGTGCGGCGCCCCCTCCCGGCGG
CGCGCCCTGCAAGCTGGGCAGCCCGGCTGGAGAGGCGGCAAAGGTATTCGGCGGCTTCCA
GGTGGTCCCGGCTCCCGATGGCCAGTTTGCCTTCCTCATCCCCAACGGGGCCTTCGCTCA
CAGCGGCCCGGTCATCCCAGTCTACACCAGCAACAGCGGGACCTCCGTGGGCCCCAACGC
AGTGTCGCCTTCCAGCGGCCCCTCGCTCACGGCGGACTCCATGTGGAGGCCTTGGCGGAA
CTGAGGGGCTCAAGCCACCCCTCCCCCCAAACTCCCCAGCCCACCTCTCTTCCCTTGGGA
CACTAAACAGGAACTTGGACTCTGGGAGAGGGGAGAGGACTTTTGTGATTAACTGGTTAC
TTTGGGGTTTTTTTTAATTTCTAAAGTTACTTTTTTTGTAGAGAAATGTATTAAGTGACT
GACCATGCACTATATTTGTACATATTTTATATGTTCATATTGGATTGCGCCTTTGTATTA
TAAAAGTTCAGATGACATTTCGTTTTTTACACGAGATTTCTTTTTTATGTGATGCCAAAG
ATGTTTGAAAATGCTCTTAAAATATCTTCCTTTGGGGAAGTTTATTTGAGAAAATATAAT
AAAAGAAAAAGAGTCAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6FHB2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6FHB2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-116, - strand, RNAz p=0.816042
               

               
               225-349, - strand, RNAz p=0.992869

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, - strand, RNAz p=0.816042
               

               
               225-349, - strand, RNAz p=0.992869

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-349, gnl|bosTau2|chr1 (45456599-45456254)
               

               
               1-349, gnl|Hg17|chr3 (195336638-195336979)
               

               
               1-349, gnl|Mm7|chr16 (29738189-29738544)
               


               
               533-1457, gnl|bosTau2|chr1 (45455026-45454103)
               

               
               533-1457, gnl|Hg17|chr3 (195338173-195339095)
               

               
               533-1457, gnl|Mm7|chr16 (29739717-29740760)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-349, gnl|bosTau2|chr1 (45456599-45456254)
               

               
               1-349, gnl|Hg17|chr3 (195336638-195336979)
               

               
               1-349, gnl|Mm7|chr16 (29738189-29738544)
               


               
               533-1457, gnl|bosTau2|chr1 (45455026-45454103)
               

               
               533-1457, gnl|Hg17|chr3 (195338173-195339095)
               

               
               533-1457, gnl|Mm7|chr16 (29739717-29740760)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               eye (0.511509)
               

               
               pla (0.401016)
               

               
               elu (0.385356)
               

               
               eje (0.296501)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               pla (0.401016)
               

               
               elu (0.385356)
               

               
               eje (0.296501)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	1-116, - strand, RNAz p=0.816042
	225-349, - strand, RNAz p=0.992869

	1-349, gnl\|bosTau2\|chr1 (45456599-45456254)
	1-349, gnl\|Hg17\|chr3 (195336638-195336979)
	1-349, gnl\|Mm7\|chr16 (29738189-29738544)

	533-1457, gnl\|bosTau2\|chr1 (45455026-45454103)
	533-1457, gnl\|Hg17\|chr3 (195338173-195339095)
	533-1457, gnl\|Mm7\|chr16 (29739717-29740760)

	eye (0.511509)
	pla (0.401016)
	elu (0.385356)
	eje (0.296501)
	nlu (0.191681)
	cmu (0.186393)
	fty (0.17584)
	cli (0.152812)
	ski (0.146735)
	lnt (0.142308)
	nmm (0.132802)
	ese (0.126502)
	eru (0.120048)
	ebs (0.118301)
	jej (0.0989218)