Non-Coding RNA Search

Ss1.1-Spl1-SPL01C120076.5

Sequence:


               
               CAAAGCTTTCTGGGTAAAGATGGATGCCCACGATCTGTTTCGCCGGCTGGGCGCCGGGGC
CAAGTTCGACGTGAGACGCTTCTCGGCGGACGCAGCACGGTTCCAGATAGGAAAAAGGAA
ATATGACTTTGATTCCTCGGAGGCACTGCAAGGACTGGACTTTTTTGGAAGTAAGAAGTC
TGTCCCAGGTGAGTGTGGAGCATCAGGAACGCGTCAGGAGCTACAAGATGAAGAGAAAAG
AGAGGAGAGCCTCCCTGAAAGGAAGAGGGAGCAGAACAAGAGAAAGAGGAAGAAGATGAC
TTCAGAAGTTACTTCTCAAGAAGAAGTTTCTACTATACAGTGGATATCATCTGTGGAAGC
AAAGATTGAAGATACAAAAGTTAAAAGAGAAAAAAAACTAACTTCAGGAAAGTTGGAGGA
GCTCAGAAAAGAAAAGATAAACTTCTTCCGGAATAAACATAAAATTCATGTCCAAGGAAC
TGATCTTCCTGACCCAATTACTACATTTCAGCAACTTGATCAGGAATATAAAATCAGTTC
TCGACTGCTTCAGAACATTCTAGATGCAGGCTTCCAATTACCTACGCCAATCCAAATGCA
AGCCATTCCAGTAATGCTGCATGGTCGAGAACTTCTGGCTTCTGCTCCTACTGGATCTGG
AAAGACTTTGGCTTTTAGCATTCCAATTTTAATGCAGCTGAAACAACCCACAAATAAAGG
CTTCAGAGCCCTGGTTATATCACCAACACGAGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGCTTTCTGGGTAAAGATGGATGCCCACGATCTGTTTCGCCGGCTGGGCGCCGGGGC
CAAGTTCGACGTGAGACGCTTCTCGGCGGACGCAGCACGGTTCCAGATAGGAAAAAGGAA
ATATGACTTTGATTCCTCGGAGGCACTGCAAGGACTGGACTTTTTTGGAAGTAAGAAGTC
TGTCCCAGGTGAGTGTGGAGCATCAGGAACGCGTCAGGAGCTACAAGATGAAGAGAAAAG
AGAGGAGAGCCTCCCTGAAAGGAAGAGGGAGCAGAACAAGAGAAAGAGGAAGAAGATGAC
TTCAGAAGTTACTTCTCAAGAAGAAGTTTCTACTATACAGTGGATATCATCTGTGGAAGC
AAAGATTGAAGATACAAAAGTTAAAAGAGAAAAAAAACTAACTTCAGGAAAGTTGGAGGA
GCTCAGAAAAGAAAAGATAAACTTCTTCCGGAATAAACATAAAATTCATGTCCAAGGAAC
TGATCTTCCTGACCCAATTACTACATTTCAGCAACTTGATCAGGAATATAAAATCAGTTC
TCGACTGCTTCAGAACATTCTAGATGCAGGCTTCCAATTACCTACGCCAATCCAAATGCA
AGCCATTCCAGTAATGCTGCATGGTCGAGAACTTCTGGCTTCTGCTCCTACTGGATCTGG
AAAGACTTTGGCTTTTAGCATTCCAATTTTAATGCAGCTGAAACAACCCACAAATAAAGG
CTTCAGAGCCCTGGTTATATCACCAACACGAGAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CS33_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CS33_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               99-592, - strand, RNAz p=0.984498

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               99-592, - strand, RNAz p=0.984498

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               99-305, gnl|bosTau2|chr19 (6937229-6937429)
               

               
               99-305, gnl|Hg17|chr17 (33076458-33076252)
               

               
               99-305, gnl|Mm7|chr11 (84013143-84013349)
               


               
               435-623, gnl|bosTau2|chr19 (6942033-6942222)
               

               
               435-623, gnl|Hg17|chr17 (33066443-33066255)
               

               
               435-623, gnl|Mm7|chr11 (84016011-84016199)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-305, gnl|bosTau2|chr19 (6937229-6937429)
               

               
               99-305, gnl|Hg17|chr17 (33076458-33076252)
               

               
               99-305, gnl|Mm7|chr11 (84013143-84013349)
               


               
               435-623, gnl|bosTau2|chr19 (6942033-6942222)
               

               
               435-623, gnl|Hg17|chr17 (33066443-33066255)
               

               
               435-623, gnl|Mm7|chr11 (84016011-84016199)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	99-305, gnl\|bosTau2\|chr19 (6937229-6937429)
	99-305, gnl\|Hg17\|chr17 (33076458-33076252)
	99-305, gnl\|Mm7\|chr11 (84013143-84013349)

	435-623, gnl\|bosTau2\|chr19 (6942033-6942222)
	435-623, gnl\|Hg17\|chr17 (33066443-33066255)
	435-623, gnl\|Mm7\|chr11 (84016011-84016199)