Non-Coding RNA Search

Ss1.1-Spl1-SPL01C120086.5

Sequence:


               
               CCTCGCCCAGAGTCAGGCGTGTAAACCAGCCGGAGCGGCGGCGGCGGCAGCGGCAGCAGC
AGGACCGCCGTGGCGCCGGGAGCAGCGACCCGGAGGGAACGCGAGGCGACGCTGGCTGCG
GCGACCCGGTGACAGCGTGAGAGGTACTAGCTTTTACAAGTTTGCACCATGCGTGAGTAT
AAGCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAATCTGCTCTGACCGTACAATTTGTT
CAAGGAATTTTTGTTGAAAAATATGATCCTACGATAGAAGATTCTTATAGAAAGCAAGTT
GAAGTAGATGCGCAACAGTGTATGCTTGAAATCTTGGATACTGCAGGAACGGAACAATTT
ACAGCAATGAGGGACTTGTACATGAAAAATGGACAAGGCTTTGCATTAGTTTATTCCATC
ACAGCACAGTCCACATTTAATGATTTACAAGATCTGAGAGAACAGATTCTTCGAGTTAAA
GACACTGATGATGTTCCAATGATCCTGGTTGGTAATAAGTGTGACTTGGAAGATGAAAGA
GTTGTAGGAAAGGAACAAGGTCAAAATCTAGCAAGACAATGGAACAACTGTGCATTCTTA
GAATCCTCTGCAAAATCAAAAATAAATGTTAATGAGATCTTTTATGACTTAGTGCGACAA
ATTAACAGAAAAACTCCAGTGCCTGGGAAGGCCCGCAAAAAGTCATCATGTCAACTGCTT
TAATATACTAAATTCATTGTAGCTCTGAGCCAGGTCTGAAGAACTGTTGCCCAATTCAAC
AGTGCCAGCATTCCAACTTTGTTAAACCTACCAACATCTTAAATGGACTTTCTGTGGTGG
TACCCTTTAAGAGGCGGATGAAAGCTACTACATCAGTTTGCACATTCTAATCACTTTCCA
GTATCACAAGAGAGATTTTTACTTATATAATAGTCCTAGAGTATGCAGCTGGTAAAACCA
GAGGCTACAATCCAGTATTACTGCTAAGAGACATTTTTCATCCACCAATGTTGTACATGT
ATGAAAATGGTGTACTGTATACTTTAACACGCCCCATACTTTGTATTGGAGAGTACAATA
ATGTAAATCCTAAAAGCACCACTATTTTAGCATAATAAAAGAAAGTCCAAAGAGCTCCTA
TATAGACTACTCCAGATAACTTCGCTTCTTTGATACTTGTAGCTTATTGTAATTTTTTTT
AAGAAATTCAAGGTCATTATCATTGTATTGTACAAATAAGCGCTTTGATTAACACAGCTA
TATAGTTTTTTTAATTTTTAAAAAACCTGTGGAGACAGTGATCTTGTCTTTAAAATATGA
TAGTCCTTTCAGTATAATGTCTTAGATTAAAGACGTTGCCTTTAATATCTGTTGGGAAGG
AAATGTCCAGACTTTTCAAATCTCTTATTATATGTTTCCTTTTTGTTTACATAGGGAACA
ATGTTTATAGTTGTGTGTACAGTGGGGGTCTACAACAAGAAGTGTATATTTTCAAACAAT
TTTTTAATGATTTAACAATTTTTGTAAATCATTTTCAGGCTTCTGCAGCTGTAGATTCTC
ACTGTGAATCCCTTGCTTGCTCATGCATAAGTGTATTTGCAATACCAAATATACAGGTTT
AGTATTTTTGCCTGTTAGTGATTGTTTCACATGTGTAACGTTTTGGTTGAGATGTTAAAT
GGTGGACGAGTACTGTGGATGTGAATGTGGGAAGTAATTTTAATCATGTGTAATTGGTCA
CAAGGCCTAAGTTGCAGTAACTATTGCTGTTTTATTTAACAATGCCTTGTTGCTTCGTAT
GCATTAACGTTTGGGTGTAAAGATTGTGTGTCTATCCAACAGGGAGCCACAGTATTTAAA
TTGACCAACCTAATGTTACAACTACTTTGAGGTGGCCAAATGTAAACTAAAAGCCTTAAT
TAAAGTGGTGCAATTTTGTATAACTTAGCATCAGTAGTTCAATAAATTTGGATTGCCATG
CAAGGGCTTGCATTATAATTACTTGCCACTTGAATGTGTTTTGTGTAGTGTTTAACAGTG
CTAGTAAATAAATATGGGTTTAACTTCTTTTTACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCGCCCAGAGTCAGGCGTGTAAACCAGCCGGAGCGGCGGCGGCGGCAGCGGCAGCAGC
AGGACCGCCGTGGCGCCGGGAGCAGCGACCCGGAGGGAACGCGAGGCGACGCTGGCTGCG
GCGACCCGGTGACAGCGTGAGAGGTACTAGCTTTTACAAGTTTGCACCATGCGTGAGTAT
AAGCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAATCTGCTCTGACCGTACAATTTGTT
CAAGGAATTTTTGTTGAAAAATATGATCCTACGATAGAAGATTCTTATAGAAAGCAAGTT
GAAGTAGATGCGCAACAGTGTATGCTTGAAATCTTGGATACTGCAGGAACGGAACAATTT
ACAGCAATGAGGGACTTGTACATGAAAAATGGACAAGGCTTTGCATTAGTTTATTCCATC
ACAGCACAGTCCACATTTAATGATTTACAAGATCTGAGAGAACAGATTCTTCGAGTTAAA
GACACTGATGATGTTCCAATGATCCTGGTTGGTAATAAGTGTGACTTGGAAGATGAAAGA
GTTGTAGGAAAGGAACAAGGTCAAAATCTAGCAAGACAATGGAACAACTGTGCATTCTTA
GAATCCTCTGCAAAATCAAAAATAAATGTTAATGAGATCTTTTATGACTTAGTGCGACAA
ATTAACAGAAAAACTCCAGTGCCTGGGAAGGCCCGCAAAAAGTCATCATGTCAACTGCTT
TAATATACTAAATTCATTGTAGCTCTGAGCCAGGTCTGAAGAACTGTTGCCCAATTCAAC
AGTGCCAGCATTCCAACTTTGTTAAACCTACCAACATCTTAAATGGACTTTCTGTGGTGG
TACCCTTTAAGAGGCGGATGAAAGCTACTACATCAGTTTGCACATTCTAATCACTTTCCA
GTATCACAAGAGAGATTTTTACTTATATAATAGTCCTAGAGTATGCAGCTGGTAAAACCA
GAGGCTACAATCCAGTATTACTGCTAAGAGACATTTTTCATCCACCAATGTTGTACATGT
ATGAAAATGGTGTACTGTATACTTTAACACGCCCCATACTTTGTATTGGAGAGTACAATA
ATGTAAATCCTAAAAGCACCACTATTTTAGCATAATAAAAGAAAGTCCAAAGAGCTCCTA
TATAGACTACTCCAGATAACTTCGCTTCTTTGATACTTGTAGCTTATTGTAATTTTTTTT
AAGAAATTCAAGGTCATTATCATTGTATTGTACAAATAAGCGCTTTGATTAACACAGCTA
TATAGTTTTTTTAATTTTTAAAAAACCTGTGGAGACAGTGATCTTGTCTTTAAAATATGA
TAGTCCTTTCAGTATAATGTCTTAGATTAAAGACGTTGCCTTTAATATCTGTTGGGAAGG
AAATGTCCAGACTTTTCAAATCTCTTATTATATGTTTCCTTTTTGTTTACATAGGGAACA
ATGTTTATAGTTGTGTGTACAGTGGGGGTCTACAACAAGAAGTGTATATTTTCAAACAAT
TTTTTAATGATTTAACAATTTTTGTAAATCATTTTCAGGCTTCTGCAGCTGTAGATTCTC
ACTGTGAATCCCTTGCTTGCTCATGCATAAGTGTATTTGCAATACCAAATATACAGGTTT
AGTATTTTTGCCTGTTAGTGATTGTTTCACATGTGTAACGTTTTGGTTGAGATGTTAAAT
GGTGGACGAGTACTGTGGATGTGAATGTGGGAAGTAATTTTAATCATGTGTAATTGGTCA
CAAGGCCTAAGTTGCAGTAACTATTGCTGTTTTATTTAACAATGCCTTGTTGCTTCGTAT
GCATTAACGTTTGGGTGTAAAGATTGTGTGTCTATCCAACAGGGAGCCACAGTATTTAAA
TTGACCAACCTAATGTTACAACTACTTTGAGGTGGCCAAATGTAAACTAAAAGCCTTAAT
TAAAGTGGTGCAATTTTGTATAACTTAGCATCAGTAGTTCAATAAATTTGGATTGCCATG
CAAGGGCTTGCATTATAATTACTTGCCACTTGAATGTGTTTTGTGTAGTGTTTAACAGTG
CTAGTAAATAAATATGGGTTTAACTTCTTTTTACAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5ZHX1_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5ZHX1_CHICK

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-790, gnl|bosTau2|chr1 (40304324-40305098)
               

               
               2-790, gnl|Hg17|chr5 (75505931-75505143)
               

               
               2-790, gnl|Mm7|chr15 (91905141-91905895)
               


               
               1564-2076, gnl|bosTau2|chr14 (25782525-25782044)
               

               
               1564-2076, gnl|Hg17|chr19 (49040718-49040270)
               

               
               1564-2076, gnl|Mm7|chr10 (117326345-117325838)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-790, gnl|bosTau2|chr1 (40304324-40305098)
               

               
               2-790, gnl|Hg17|chr5 (75505931-75505143)
               

               
               2-790, gnl|Mm7|chr15 (91905141-91905895)
               


               
               1564-2076, gnl|bosTau2|chr14 (25782525-25782044)
               

               
               1564-2076, gnl|Hg17|chr19 (49040718-49040270)
               

               
               1564-2076, gnl|Mm7|chr10 (117326345-117325838)

Expressed library(ies): 45 entry(ies)

More info

Expressed library(ies): 45 entry(ies)

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               spl (1.14548)
               

               
               cbl (0.918379)
               

               
               liv (0.731422)
               

               
               ova (0.516529)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               nca (0.410621)
               

               
               nlu (0.383362)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               lun (0.300978)
               

               
               nbm (0.297974)
               

               
               jej (0.296765)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               eep (0.245128)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (1.14548)
               

               
               cbl (0.918379)
               

               
               liv (0.731422)
               

               
               ova (0.516529)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               nca (0.410621)
               

               
               nlu (0.383362)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               lun (0.300978)
               

               
               nbm (0.297974)
               

               
               jej (0.296765)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               eep (0.245128)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	2-790, gnl\|bosTau2\|chr1 (40304324-40305098)
	2-790, gnl\|Hg17\|chr5 (75505931-75505143)
	2-790, gnl\|Mm7\|chr15 (91905141-91905895)

	1564-2076, gnl\|bosTau2\|chr14 (25782525-25782044)
	1564-2076, gnl\|Hg17\|chr19 (49040718-49040270)
	1564-2076, gnl\|Mm7\|chr10 (117326345-117325838)

	spl (1.14548)
	cbl (0.918379)
	liv (0.731422)
	ova (0.516529)
	mgp (0.461361)
	lin (0.436808)
	lnt (0.426925)
	amn (0.417711)
	cty (0.41632)
	nca (0.410621)
	nlu (0.383362)
	vin (0.332557)
	nje (0.33184)
	mga (0.32041)
	lun (0.300978)
	nbm (0.297974)
	jej (0.296765)
	cga (0.279096)
	nmm (0.265604)
	ret (0.257467)
	thg (0.253582)
	tra (0.246184)
	eep (0.245128)
	ece (0.229305)
	tes (0.207814)
	col (0.195008)
	cmu (0.186393)
	sag (0.182715)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	nco (0.161734)
	tbr (0.154178)
	bfe (0.149858)
	hyp (0.142837)
	pty (0.142714)
	ste (0.135208)
	kid (0.129735)
	bla (0.124347)
	eru (0.120048)
	clu (0.119646)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)
	ldo (0.0970026)