Non-Coding RNA Search

Ss1.1-Spl1-SPL01D010099.5

Sequence:


               
               CTATGAAAAAGAGGTGCCTCTCTCCGCCCTCACCAGCATTCTGGACGCTCAGCTCATCAG
CCAGTGGAAAGGGAATATGACCAGACTCACCCGCCTCCTGGTTCTGCCCAAGTTCTCCCT
GGAGAGTGAAGTTGACCTCAGGAGGCCCCTGGAGAACTTGGGAATGACGGATATGTTTAG
GCCTAACCAGGCGGACTTCTCAAGTCTTTCAGATCAAGAGCTTCTGTACGTGTCGCAGGC
CCTGCAAAAGGTGAAGATCGAGGTGAATGAGAGCGGCACGGTGGCATCCTCCTCTACGGC
CATTATCGTCTCAGCCCGCATGGCCCCCGAGGAGATCATCATGGACCGGCCCTTCCTGTT
CGTGGTGCGGCACAACCCCACAGGAACGGTCCTTTTCATGGGCCAAGTGATGGAGCCTTG
ACCATGGATGGAAAAGCAGTCCTCGAATGGGACAGAACTGGAGATATCCAGGAAGAACAA
TCTCCGGAGAGAATTTTCACTTTAAGTCATTTTGCTGGAGAAAAAGAAGCTATTTGCCCT
TGTTTTCATAATGGTAAATCTTTCGAATCTGCCTCTTAGACCTCAGGCTCCCCCAGGAAG
GGGAGAGAGGACACTGGAGAAAACTCCCCCAGTGGAGGTCCCGGGAGAGACCTTGGAAGC
ACGTCTCCCCAAAGGGCTGGCAGCCAGACCACAGAACTCTCAGAACCACTCGCGCAGCTG
CTTCTGCCCAACGCTCTGCCCATTGGGGTCTTCGGACTGGATCCCACTGTGGCCCTGGCA
GGATAGGACCGCGAGGCTTACAGGAACCCCTGTGTGCTGGGTAGAAATGATTTGCGTTCC
AGTCACGTTGCTGTCACTCTTGCGCTGTCTGCCACTGCTGAGAGGGCTGGCGGTGGCGGG
CCCAAGGCCAAGGCAAGAAACACCCTTTGGTGGCAAGGTCCGTCCTCCCCCGGCCAGCTC
CAAGGTGCGCGACCCACCTGGGCCTGGCTGCTCCCTCCCCAGAAACAGTGTGTATGTATT
ATTTTGGAGTGTAGGTGACTTGTTTACTTGGAGGAGCAGGCTTCTGCTTCCCACAAACTT
CATTTTGCAGAAATAGAGGAAGAAACGTGAGGTGTCTGCCTGGATCTCAGCTCCAGTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATGAAAAAGAGGTGCCTCTCTCCGCCCTCACCAGCATTCTGGACGCTCAGCTCATCAG
CCAGTGGAAAGGGAATATGACCAGACTCACCCGCCTCCTGGTTCTGCCCAAGTTCTCCCT
GGAGAGTGAAGTTGACCTCAGGAGGCCCCTGGAGAACTTGGGAATGACGGATATGTTTAG
GCCTAACCAGGCGGACTTCTCAAGTCTTTCAGATCAAGAGCTTCTGTACGTGTCGCAGGC
CCTGCAAAAGGTGAAGATCGAGGTGAATGAGAGCGGCACGGTGGCATCCTCCTCTACGGC
CATTATCGTCTCAGCCCGCATGGCCCCCGAGGAGATCATCATGGACCGGCCCTTCCTGTT
CGTGGTGCGGCACAACCCCACAGGAACGGTCCTTTTCATGGGCCAAGTGATGGAGCCTTG
ACCATGGATGGAAAAGCAGTCCTCGAATGGGACAGAACTGGAGATATCCAGGAAGAACAA
TCTCCGGAGAGAATTTTCACTTTAAGTCATTTTGCTGGAGAAAAAGAAGCTATTTGCCCT
TGTTTTCATAATGGTAAATCTTTCGAATCTGCCTCTTAGACCTCAGGCTCCCCCAGGAAG
GGGAGAGAGGACACTGGAGAAAACTCCCCCAGTGGAGGTCCCGGGAGAGACCTTGGAAGC
ACGTCTCCCCAAAGGGCTGGCAGCCAGACCACAGAACTCTCAGAACCACTCGCGCAGCTG
CTTCTGCCCAACGCTCTGCCCATTGGGGTCTTCGGACTGGATCCCACTGTGGCCCTGGCA
GGATAGGACCGCGAGGCTTACAGGAACCCCTGTGTGCTGGGTAGAAATGATTTGCGTTCC
AGTCACGTTGCTGTCACTCTTGCGCTGTCTGCCACTGCTGAGAGGGCTGGCGGTGGCGGG
CCCAAGGCCAAGGCAAGAAACACCCTTTGGTGGCAAGGTCCGTCCTCCCCCGGCCAGCTC
CAAGGTGCGCGACCCACCTGGGCCTGGCTGCTCCCTCCCCAGAAACAGTGTGTATGTATT
ATTTTGGAGTGTAGGTGACTTGTTTACTTGGAGGAGCAGGCTTCTGCTTCCCACAAACTT
CATTTTGCAGAAATAGAGGAAGAAACGTGAGGTGTCTGCCTGGATCTCAGCTCCAGTCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7YSA1_CANFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7YSA1_CANFA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               569-683, - strand, RNAz p=0.999991

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               569-683, - strand, RNAz p=0.999991

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-113, gnl|bosTau2|chr25 (32765485-32765597)
               

               
               1-113, gnl|Hg17|chr7 (100370499-100370611)
               

               
               1-113, gnl|Mm7|chr5 (136037847-136037735)
               


               
               378-1140, gnl|bosTau2|chr25 (32768753-32769516)
               

               
               378-1140, gnl|canFam2|chr6 (11725745-11724724)
               

               
               378-1140, gnl|dasNov1|scaffold_36464 (8503-9500)
               

               
               378-1140, gnl|echTel1|scaffold_162590 (1473-204)
               

               
               378-1140, gnl|hg17|chr7 (100374101-100375135)
               

               
               378-1140, gnl|Hg17|chr7 (100374115-100374916)
               

               
               378-1140, gnl|loxAfr1|scaffold_65997 (6178-7267)
               

               
               378-1140, gnl|mm7|chr5 (136034143-136033184)
               

               
               378-1140, gnl|Mm7|chr5 (136034127-136033414)
               

               
               378-1140, gnl|monDom2|scaffold_66 (2974008-2975043)
               

               
               378-1140, gnl|oryCun1|scaffold_204524 (45117-44116)
               

               
               378-1140, gnl|panTro1|chr6 (102140735-102141769)
               

               
               378-1140, gnl|rheMac2|chr3 (48424638-48425672)
               

               
               378-1140, gnl|rn3|chr12 (20923404-20922433)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-113, gnl|bosTau2|chr25 (32765485-32765597)
               

               
               1-113, gnl|Hg17|chr7 (100370499-100370611)
               

               
               1-113, gnl|Mm7|chr5 (136037847-136037735)
               


               
               378-1140, gnl|bosTau2|chr25 (32768753-32769516)
               

               
               378-1140, gnl|canFam2|chr6 (11725745-11724724)
               

               
               378-1140, gnl|dasNov1|scaffold_36464 (8503-9500)
               

               
               378-1140, gnl|echTel1|scaffold_162590 (1473-204)
               

               
               378-1140, gnl|hg17|chr7 (100374101-100375135)
               

               
               378-1140, gnl|Hg17|chr7 (100374115-100374916)
               

               
               378-1140, gnl|loxAfr1|scaffold_65997 (6178-7267)
               

               
               378-1140, gnl|mm7|chr5 (136034143-136033184)
               

               
               378-1140, gnl|Mm7|chr5 (136034127-136033414)
               

               
               378-1140, gnl|monDom2|scaffold_66 (2974008-2975043)
               

               
               378-1140, gnl|oryCun1|scaffold_204524 (45117-44116)
               

               
               378-1140, gnl|panTro1|chr6 (102140735-102141769)
               

               
               378-1140, gnl|rheMac2|chr3 (48424638-48425672)
               

               
               378-1140, gnl|rn3|chr12 (20923404-20922433)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cov (0.264306)
               

               
               cty (0.20816)
               

               
               sto (0.179824)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               cty (0.20816)
               

               
               sto (0.179824)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               eje (0.0988338)

	1-113, gnl\|bosTau2\|chr25 (32765485-32765597)
	1-113, gnl\|Hg17\|chr7 (100370499-100370611)
	1-113, gnl\|Mm7\|chr5 (136037847-136037735)

	378-1140, gnl\|bosTau2\|chr25 (32768753-32769516)
	378-1140, gnl\|canFam2\|chr6 (11725745-11724724)
	378-1140, gnl\|dasNov1\|scaffold_36464 (8503-9500)
	378-1140, gnl\|echTel1\|scaffold_162590 (1473-204)
	378-1140, gnl\|hg17\|chr7 (100374101-100375135)
	378-1140, gnl\|Hg17\|chr7 (100374115-100374916)
	378-1140, gnl\|loxAfr1\|scaffold_65997 (6178-7267)
	378-1140, gnl\|mm7\|chr5 (136034143-136033184)
	378-1140, gnl\|Mm7\|chr5 (136034127-136033414)
	378-1140, gnl\|monDom2\|scaffold_66 (2974008-2975043)
	378-1140, gnl\|oryCun1\|scaffold_204524 (45117-44116)
	378-1140, gnl\|panTro1\|chr6 (102140735-102141769)
	378-1140, gnl\|rheMac2\|chr3 (48424638-48425672)
	378-1140, gnl\|rn3\|chr12 (20923404-20922433)

	cov (0.264306)
	cty (0.20816)
	sto (0.179824)
	nje (0.16592)
	pla (0.133672)
	eje (0.0988338)