Non-Coding RNA Search

Ss1.1-Spl1-SPL01D010104.5

Sequence:


               
               GCGGCGACGGCGGCGGCAGTGGCGGTCGGTGCTGCGGCAGCGGCGGCGACGGCTCGGCGG
GACCGAGGGCGGGAGCGGCCGAGACCATGGCTGGAGGTAAAGCTGGAAAGGACAGTGGAA
AGGCCAAGGCTAAGGCAGTGTCTCGCTCACAGAGAGCTGGGCTACAGTTTCCCGTGGGCC
GCATCCACAGACATTTGAAGACTCGCACCACAAGCCACGGAAGGGTTGGTGCCACCGCTG
CGGTGTACAGTGCCGCGATTCTGGAGTACCTCACCGCTGAGGTGCTGGAGCTGGCAGGTA
ATGCTTCCAAGGATCTCAAAGTGAAGCGGATCACTCCACGCCACTTGCAGCTTGCGATCC
GTGGTGATGAAGAGTTGGATTCGCTTATCAAGGCCACCATAGCTGGGGGTGGCGTGATCC
CTCACATCCACAAGTCTCTGATTGGAAAGAAGGGACAGCAGAAAACTGCTTAGAGAGTTG
TCTTAACCAACCCTCTTCCTCCCCGTCATTGTACTGTAACTGGGACAGAAGAAGTAATGG
GGATATGTGGAATTTTTTAAAACAGTTCAGTGGAAAAGCTTAGGCAGTTACTGTAGACAT
GATAAACATTTGTACGTTCTTTGATAAAAAGTACCTTTTCATGTGGCAGCAGTCGTGTGT
TGATTGGCTAGGTTTCTCCCTTGTGTTTTATACAAAAATGTGATTGAGTTCCCGTTGTGG
TTCAGTGGTAATGAACCCGACTAGTATCCATGAGGATGTGGGTTCCATCCCTGGCCTTGC
TCAGTGGGTTAAGGATCTAGCGTTGCCATGAGCTGCAGCATAGGCTGCAGATTCGGCTTA
GATCTGGCATTGCTGTGGCTGTGGTGGAGGCCAGCAGCTGTAGCTCCAATTCGACCTCTA
GCCTGGGAACTTCCATATGCCGCAGGTGCGGCCCTAAAAGGAAAGAAAATGGAATTGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCGACGGCGGCGGCAGTGGCGGTCGGTGCTGCGGCAGCGGCGGCGACGGCTCGGCGG
GACCGAGGGCGGGAGCGGCCGAGACCATGGCTGGAGGTAAAGCTGGAAAGGACAGTGGAA
AGGCCAAGGCTAAGGCAGTGTCTCGCTCACAGAGAGCTGGGCTACAGTTTCCCGTGGGCC
GCATCCACAGACATTTGAAGACTCGCACCACAAGCCACGGAAGGGTTGGTGCCACCGCTG
CGGTGTACAGTGCCGCGATTCTGGAGTACCTCACCGCTGAGGTGCTGGAGCTGGCAGGTA
ATGCTTCCAAGGATCTCAAAGTGAAGCGGATCACTCCACGCCACTTGCAGCTTGCGATCC
GTGGTGATGAAGAGTTGGATTCGCTTATCAAGGCCACCATAGCTGGGGGTGGCGTGATCC
CTCACATCCACAAGTCTCTGATTGGAAAGAAGGGACAGCAGAAAACTGCTTAGAGAGTTG
TCTTAACCAACCCTCTTCCTCCCCGTCATTGTACTGTAACTGGGACAGAAGAAGTAATGG
GGATATGTGGAATTTTTTAAAACAGTTCAGTGGAAAAGCTTAGGCAGTTACTGTAGACAT
GATAAACATTTGTACGTTCTTTGATAAAAAGTACCTTTTCATGTGGCAGCAGTCGTGTGT
TGATTGGCTAGGTTTCTCCCTTGTGTTTTATACAAAAATGTGATTGAGTTCCCGTTGTGG
TTCAGTGGTAATGAACCCGACTAGTATCCATGAGGATGTGGGTTCCATCCCTGGCCTTGC
TCAGTGGGTTAAGGATCTAGCGTTGCCATGAGCTGCAGCATAGGCTGCAGATTCGGCTTA
GATCTGGCATTGCTGTGGCTGTGGTGGAGGCCAGCAGCTGTAGCTCCAATTCGACCTCTA
GCCTGGGAACTTCCATATGCCGCAGGTGCGGCCCTAAAAGGAAAGAAAATGGAATTGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PK98_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PK98_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               206-325, - strand, RNAz p=0.823704

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               206-325, - strand, RNAz p=0.823704

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               87-618, gnl|bosTau2|chr17 (36004493-36005024)
               


               
               104-430, gnl|bosTau2|chr12 (1673218-1672892)
               

               
               104-430, gnl|Hg17|chr6 (26380751-26380431)
               

               
               104-430, gnl|Mm7|chr13 (22899911-22900237)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-618, gnl|bosTau2|chr17 (36004493-36005024)
               


               
               104-430, gnl|bosTau2|chr12 (1673218-1672892)
               

               
               104-430, gnl|Hg17|chr6 (26380751-26380431)
               

               
               104-430, gnl|Mm7|chr13 (22899911-22900237)

Expressed library(ies): 45 entry(ies)

More info

Expressed library(ies): 45 entry(ies)

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               sto (0.899119)
               

               
               cje (0.660939)
               

               
               cut (0.509771)
               

               
               tbr (0.462535)
               

               
               bfe (0.449573)
               

               
               lnt (0.426925)
               

               
               csk (0.422238)
               

               
               ldo (0.38801)
               

               
               fty (0.351679)
               

               
               med (0.348756)
               

               
               csp (0.322373)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               eje (0.296501)
               

               
               spl (0.286369)
               

               
               cst (0.280073)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.899119)
               

               
               cje (0.660939)
               

               
               cut (0.509771)
               

               
               tbr (0.462535)
               

               
               bfe (0.449573)
               

               
               lnt (0.426925)
               

               
               csk (0.422238)
               

               
               ldo (0.38801)
               

               
               fty (0.351679)
               

               
               med (0.348756)
               

               
               csp (0.322373)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               eje (0.296501)
               

               
               spl (0.286369)
               

               
               cst (0.280073)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

	87-618, gnl\|bosTau2\|chr17 (36004493-36005024)

	104-430, gnl\|bosTau2\|chr12 (1673218-1672892)
	104-430, gnl\|Hg17\|chr6 (26380751-26380431)
	104-430, gnl\|Mm7\|chr13 (22899911-22900237)

	sto (0.899119)
	cje (0.660939)
	cut (0.509771)
	tbr (0.462535)
	bfe (0.449573)
	lnt (0.426925)
	csk (0.422238)
	ldo (0.38801)
	fty (0.351679)
	med (0.348756)
	csp (0.322373)
	cty (0.31224)
	sme (0.305437)
	cag (0.302389)
	eje (0.296501)
	spl (0.286369)
	cst (0.280073)
	che (0.272628)
	fce (0.271592)
	ste (0.270416)
	ova (0.258264)
	ece (0.229305)
	mas (0.210305)
	tes (0.207814)
	hea (0.204499)
	jej (0.197844)
	nlu (0.191681)
	nep (0.183925)
	ton (0.1755)
	sin (0.174948)
	rec (0.17307)
	mcp (0.170648)
	eye (0.170503)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	lin (0.145603)
	hlv (0.139256)
	pla (0.133672)
	kid (0.129735)
	thg (0.126791)
	cly (0.120642)
	ebs (0.118301)
	cbl (0.114797)
	nbm (0.0993246)