Non-Coding RNA Search

Ss1.1-Spl1-SPL01D030100.5

Sequence:


               
               CCACCGCGTGCTCAACTCGGAAATGGTGCCGTAGCTCCTCGATGCGCAGTTCCACTGCCC
CTAGGTCCGGACTCCCTTGGGCCTCATCCGGGGCCGCCTGGCTCTCCAGCTGGCAGGCCT
GCAGTGCCCGGCGGAGCTGCATGCGGATGATGTCAATCTTGGTCTTACTGTCCTGCAGCA
TCTGTTGGGCCGTCAGCAGCAGCTTCCGGTCCTTGGTGCTGCCGTTGCTGTACGTCTGGA
TCATGTTTTCCGCCCCCTGCTTCACCTTCAGCTCGATGGCCAGCTGCTTCTCCAAGCCAG
CCACGAGGCTCAGGTTGGTGGCTGAGCAGGTTGGGCCACCTGCACCGGGGGACTGGGGGG
CATCATGGGCAGTGGCTGCGGGGTCAGGCAGCACCACATGGGCATGCAGCTCCTGCAGCT
GCTGGTGCAGCAGGTCAAGCCTGCGTGAGGAGCCACGCAGCACAAGCTCCACAGGACCCA
GGCTGCGGCCCAGGTCGGTAGTAGCCCGACGCAGATTCTCAGCTCCCTCCTTCAGCTTCA
GCTCCTTGCGGATCTCCCGCCGCAGCCGTTCCCGCTCCAGCTCCAGCTGCTGCTGCACCC
CGGGGGCCGCCAGGTCGGCACCCGCCAGGCCCAGCTGCTCCAGCAGGGACCAGCTGCGGG
GCTCACTCTCCAGCTCCCGGTCCAAAGGGGGACCAGCCTCCGCCATCCTGGGTCCCGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCGCGTGCTCAACTCGGAAATGGTGCCGTAGCTCCTCGATGCGCAGTTCCACTGCCC
CTAGGTCCGGACTCCCTTGGGCCTCATCCGGGGCCGCCTGGCTCTCCAGCTGGCAGGCCT
GCAGTGCCCGGCGGAGCTGCATGCGGATGATGTCAATCTTGGTCTTACTGTCCTGCAGCA
TCTGTTGGGCCGTCAGCAGCAGCTTCCGGTCCTTGGTGCTGCCGTTGCTGTACGTCTGGA
TCATGTTTTCCGCCCCCTGCTTCACCTTCAGCTCGATGGCCAGCTGCTTCTCCAAGCCAG
CCACGAGGCTCAGGTTGGTGGCTGAGCAGGTTGGGCCACCTGCACCGGGGGACTGGGGGG
CATCATGGGCAGTGGCTGCGGGGTCAGGCAGCACCACATGGGCATGCAGCTCCTGCAGCT
GCTGGTGCAGCAGGTCAAGCCTGCGTGAGGAGCCACGCAGCACAAGCTCCACAGGACCCA
GGCTGCGGCCCAGGTCGGTAGTAGCCCGACGCAGATTCTCAGCTCCCTCCTTCAGCTTCA
GCTCCTTGCGGATCTCCCGCCGCAGCCGTTCCCGCTCCAGCTCCAGCTGCTGCTGCACCC
CGGGGGCCGCCAGGTCGGCACCCGCCAGGCCCAGCTGCTCCAGCAGGGACCAGCTGCGGG
GCTCACTCTCCAGCTCCCGGTCCAAAGGGGGACCAGCCTCCGCCATCCTGGGTCCCGGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BWL8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BWL8_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               104-213, + strand, RNAz p=0.741502

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               104-213, + strand, RNAz p=0.741502

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               69-213, gnl|bosTau2|chr7 (7417842-7417987)
               

               
               69-213, gnl|Hg17|chr19 (14418381-14418236)
               

               
               69-213, gnl|Mm7|chr8 (82265459-82265613)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-213, gnl|bosTau2|chr7 (7417842-7417987)
               

               
               69-213, gnl|Hg17|chr19 (14418381-14418236)
               

               
               69-213, gnl|Mm7|chr8 (82265459-82265613)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.239292)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)

	69-213, gnl\|bosTau2\|chr7 (7417842-7417987)
	69-213, gnl\|Hg17\|chr19 (14418381-14418236)
	69-213, gnl\|Mm7\|chr8 (82265459-82265613)