Non-Coding RNA Search

Ss1.1-Spl1-SPL01D030104.5.5

Sequence:


               
               GCGGATTGGGGATTACAAGGTCAAGTACGGCTACACTGACATCGACCTACTCAGCGCTGC
CAAGTCCAAGCCGATCATCGCAGAGCCGGAAATCCACGGTGCACAGCCCCTGGACGGGGT
GACCGGCTTCCTGGTGCTGATGTCCGAGGGGCTATACAAGGCCCTGGAGGCAGCCCACGG
GCCTGGGCAGGCCAACCAGGAGATCGCAGCCATGATCGACACAGAGTTTGCCAAGCAGAC
CTCCCTGGATGCCGTGGCCCAGGCCGTGGTGGACCGGGTGAAGCGGATCCACAGTGACAC
CTTCGCCAGCGGCGGGGAGCGTGCCAAGTTCTGCCCACGGCACGAGGACATGACCCTGCT
GGTGCGGAACTTCGGCTACCCTCTGGGCGAGCTGAGCCAGCCCACGCCGGCCCCAGCCCC
AGCCGCAGGAGGACGCGTGTACCCCGTGTCTGTGCCGTACTCGAGCGCCCAGAGCACCAG
CAAGACCAGCGTGACCCTGTCCCTCGTCATGCCCTCCCAGGGCCAGCTGGTCAACGGGGC
CCACAGTGCTTCCACCCTGGACGAAGCCACGCCCACCCTCACCAACCAGAGCCCGACCCT
GACCCTGCAGTCCACCAACACCCACACCCAGAGCAGCAGCTCCAGCTCCGACGGGGGCCT
CTTTCGCTCCCGGCCCACCCACTCGCTCCCGCCCGGCGAGGATGGCCGCGTGGAGCCCTA
CGTGGACTTCGCGGAGTTCTACCGCCTGTGGAGCGTGGACCACGGCGAGCAGAGTGTGGC
GACGGCGCCGTAGCCCGGCCGGGGCGCGCGGCCCACGCAGGACCTCGCCGGGGGGACGGG
CCCACCTCTGGGCTGGACGGGCCCTTTCCGGCCCTTTGCCTGTGCTCGGGGGCTGGCGGC
CGCCCGGTCCTCGTAGCTCTCAGCCCCCAGCCTTCCAAGCCGTGGAGAATATTCTCTGAA
GACGCCAGCGCAGGCCGACCCCTTGCCAGTGCGGCTGTGCGGAGGCTGGAGGCACTCCCC
TGGGTGACCTCAGCCTGGACCAGCACCGTTTCTCAGAAAAGGGCACCGGTGCAGCTGCCC
ACGAACCCACCGAGTGAGCCGAACGTGAGGAGCTTCTCCTGTGACCCTGCATGCCACAGG
CCCAGAGCCGCTGCTTCCTCAGGGCCACCCCCGTCCTGCCACCACCTCCCCTGGAAGAGC
TTGTGGCCACTGCTAGCGCCCCCCTCACCGCTGGGCAGTGGTTCCCTCCTTTCTTCTCCG
GCCTCCAGAGCGGATCCCCAGTTGGTGTGTACATCTTCGGTGCTTGCCTGGACTCACGGG
GCCTGGAATGGGTGCAGAGGGGCCAGGTCACATGGAAAGGAACTGGAGGGGACTGGCCCA
AGGGGAGCCCTGGTCCTAGAGCCCCAGAGGAGGGCAGGCAGGCCGGTGCAGGGCCAGCTT
CCAAGGGGAGCCGCAGCCAGGGCAGAGGACAGGCAGGATCTCAGCACAGGGCCCTTCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGATTGGGGATTACAAGGTCAAGTACGGCTACACTGACATCGACCTACTCAGCGCTGC
CAAGTCCAAGCCGATCATCGCAGAGCCGGAAATCCACGGTGCACAGCCCCTGGACGGGGT
GACCGGCTTCCTGGTGCTGATGTCCGAGGGGCTATACAAGGCCCTGGAGGCAGCCCACGG
GCCTGGGCAGGCCAACCAGGAGATCGCAGCCATGATCGACACAGAGTTTGCCAAGCAGAC
CTCCCTGGATGCCGTGGCCCAGGCCGTGGTGGACCGGGTGAAGCGGATCCACAGTGACAC
CTTCGCCAGCGGCGGGGAGCGTGCCAAGTTCTGCCCACGGCACGAGGACATGACCCTGCT
GGTGCGGAACTTCGGCTACCCTCTGGGCGAGCTGAGCCAGCCCACGCCGGCCCCAGCCCC
AGCCGCAGGAGGACGCGTGTACCCCGTGTCTGTGCCGTACTCGAGCGCCCAGAGCACCAG
CAAGACCAGCGTGACCCTGTCCCTCGTCATGCCCTCCCAGGGCCAGCTGGTCAACGGGGC
CCACAGTGCTTCCACCCTGGACGAAGCCACGCCCACCCTCACCAACCAGAGCCCGACCCT
GACCCTGCAGTCCACCAACACCCACACCCAGAGCAGCAGCTCCAGCTCCGACGGGGGCCT
CTTTCGCTCCCGGCCCACCCACTCGCTCCCGCCCGGCGAGGATGGCCGCGTGGAGCCCTA
CGTGGACTTCGCGGAGTTCTACCGCCTGTGGAGCGTGGACCACGGCGAGCAGAGTGTGGC
GACGGCGCCGTAGCCCGGCCGGGGCGCGCGGCCCACGCAGGACCTCGCCGGGGGGACGGG
CCCACCTCTGGGCTGGACGGGCCCTTTCCGGCCCTTTGCCTGTGCTCGGGGGCTGGCGGC
CGCCCGGTCCTCGTAGCTCTCAGCCCCCAGCCTTCCAAGCCGTGGAGAATATTCTCTGAA
GACGCCAGCGCAGGCCGACCCCTTGCCAGTGCGGCTGTGCGGAGGCTGGAGGCACTCCCC
TGGGTGACCTCAGCCTGGACCAGCACCGTTTCTCAGAAAAGGGCACCGGTGCAGCTGCCC
ACGAACCCACCGAGTGAGCCGAACGTGAGGAGCTTCTCCTGTGACCCTGCATGCCACAGG
CCCAGAGCCGCTGCTTCCTCAGGGCCACCCCCGTCCTGCCACCACCTCCCCTGGAAGAGC
TTGTGGCCACTGCTAGCGCCCCCCTCACCGCTGGGCAGTGGTTCCCTCCTTTCTTCTCCG
GCCTCCAGAGCGGATCCCCAGTTGGTGTGTACATCTTCGGTGCTTGCCTGGACTCACGGG
GCCTGGAATGGGTGCAGAGGGGCCAGGTCACATGGAAAGGAACTGGAGGGGACTGGCCCA
AGGGGAGCCCTGGTCCTAGAGCCCCAGAGGAGGGCAGGCAGGCCGGTGCAGGGCCAGCTT
CCAAGGGGAGCCGCAGCCAGGGCAGAGGACAGGCAGGATCTCAGCACAGGGCCCTTCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CV62_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CV62_MOUSE

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               198-422, gnl|bosTau2|chr5 (69868538-69868762)
               

               
               198-422, gnl|Hg17|chr22 (38147206-38147430)
               

               
               198-422, gnl|Mm7|chr15 (80242083-80242307)
               


               
               583-1008, gnl|bosTau2|chr5 (69871982-69872405)
               

               
               583-1008, gnl|Hg17|chr22 (38150517-38150955)
               

               
               583-1008, gnl|Mm7|chr15 (80244552-80244959)
               


               
               1091-1297, gnl|bosTau2|chr5 (69872445-69872643)
               

               
               1091-1297, gnl|Hg17|chr22 (38151028-38151240)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               198-422, gnl|bosTau2|chr5 (69868538-69868762)
               

               
               198-422, gnl|Hg17|chr22 (38147206-38147430)
               

               
               198-422, gnl|Mm7|chr15 (80242083-80242307)
               


               
               583-1008, gnl|bosTau2|chr5 (69871982-69872405)
               

               
               583-1008, gnl|Hg17|chr22 (38150517-38150955)
               

               
               583-1008, gnl|Mm7|chr15 (80244552-80244959)
               


               
               1091-1297, gnl|bosTau2|chr5 (69872445-69872643)
               

               
               1091-1297, gnl|Hg17|chr22 (38151028-38151240)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               pla (0.401016)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	198-422, gnl\|bosTau2\|chr5 (69868538-69868762)
	198-422, gnl\|Hg17\|chr22 (38147206-38147430)
	198-422, gnl\|Mm7\|chr15 (80242083-80242307)

	583-1008, gnl\|bosTau2\|chr5 (69871982-69872405)
	583-1008, gnl\|Hg17\|chr22 (38150517-38150955)
	583-1008, gnl\|Mm7\|chr15 (80244552-80244959)

	1091-1297, gnl\|bosTau2\|chr5 (69872445-69872643)
	1091-1297, gnl\|Hg17\|chr22 (38151028-38151240)

	pla (0.401016)
	nms (0.213858)
	nlu (0.191681)
	nep (0.183925)
	mcp (0.170648)
	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	ute (0.132784)
	cly (0.120642)
	eru (0.120048)
	jca (0.11396)