Non-Coding RNA Search

Ss1.1-Spl1-SPL01D050052.5

Sequence:


               
               TATTTTGAGAACGGCGGGGAAAAGCTCGCGTGAGGTTTGTAGCGCTCGGCCGGCTGCGGC
CCATGGCTGTCTCCGGGCCGCTCGGCACTTTCCGTCTCCCGCCGTTGCCCACAATTCGAG
AAATCATTAGGTTGTTTAAACTGCAAGCAGTGAAGCAGCTATCCCAGAATTTTCTCTTGG
ACTTGAGGCTAACAGATAAAATTGTAAGGAAAGCTGGCAGTCTGACAAATGCTTATGTTT
ATGAAGTGGGCCCTGGGCCTGGTGGAATCACAAGATCCATTCTCAATGCTGGTATTGCTG
AACTTCTGGTGGTTGAAAAGGATAGTCGGTTTATTCCTGGATTACAGATGCTTTCTGATG
CAGCACCTGGAAAACTGAGAATTGTCCATGGAGATGTGTTGACATTTAAGATAGAAAGGG
CTTTTCCAGAAAGTCTCAAAAGACAGTGGGAGGATGATCCTCCAAATGTACATATTATTG
GAAACCTGCCTTTTAGTGTATCAACTCCACTGATTATTAAGTGGCTTGAAAACGTTTCTC
ATAGAAATGGACCTTTTGCTTATGGCAGAACCCAGATGACACTGACTTTTCAGAAGGAAG
TGGCAGAGAGACTTATAGCCAGTAAAGGAAGCAAGCAGCGTAGTCGTCTTTCCATCATGG
CCCAGTACCTCTGCGACGTTCAGCACGTCTTGACAATTCCAGGTCGGGCTTTTGTCCCCA
AACCAGAGGTGGATGTGGGGGTGGTGCACTTTACCCCCCTGACTCAGCCCAAGATAGAGC
AGCCGTTCAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTTGAGAACGGCGGGGAAAAGCTCGCGTGAGGTTTGTAGCGCTCGGCCGGCTGCGGC
CCATGGCTGTCTCCGGGCCGCTCGGCACTTTCCGTCTCCCGCCGTTGCCCACAATTCGAG
AAATCATTAGGTTGTTTAAACTGCAAGCAGTGAAGCAGCTATCCCAGAATTTTCTCTTGG
ACTTGAGGCTAACAGATAAAATTGTAAGGAAAGCTGGCAGTCTGACAAATGCTTATGTTT
ATGAAGTGGGCCCTGGGCCTGGTGGAATCACAAGATCCATTCTCAATGCTGGTATTGCTG
AACTTCTGGTGGTTGAAAAGGATAGTCGGTTTATTCCTGGATTACAGATGCTTTCTGATG
CAGCACCTGGAAAACTGAGAATTGTCCATGGAGATGTGTTGACATTTAAGATAGAAAGGG
CTTTTCCAGAAAGTCTCAAAAGACAGTGGGAGGATGATCCTCCAAATGTACATATTATTG
GAAACCTGCCTTTTAGTGTATCAACTCCACTGATTATTAAGTGGCTTGAAAACGTTTCTC
ATAGAAATGGACCTTTTGCTTATGGCAGAACCCAGATGACACTGACTTTTCAGAAGGAAG
TGGCAGAGAGACTTATAGCCAGTAAAGGAAGCAAGCAGCGTAGTCGTCTTTCCATCATGG
CCCAGTACCTCTGCGACGTTCAGCACGTCTTGACAATTCCAGGTCGGGCTTTTGTCCCCA
AACCAGAGGTGGATGTGGGGGTGGTGCACTTTACCCCCCTGACTCAGCCCAAGATAGAGC
AGCCGTTCAAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55627852|ref|XP_518881.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55627852|ref|XP_518881.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               194-358, gnl|bosTau2|chr9 (53842648-53842813)
               

               
               194-358, gnl|Hg17|chr6 (155724588-155724423)
               

               
               194-358, gnl|Mm7|chr17 (3554887-3554722)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               194-358, gnl|bosTau2|chr9 (53842648-53842813)
               

               
               194-358, gnl|Hg17|chr6 (155724588-155724423)
               

               
               194-358, gnl|Mm7|chr17 (3554887-3554722)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nco (0.161734)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	194-358, gnl\|bosTau2\|chr9 (53842648-53842813)
	194-358, gnl\|Hg17\|chr6 (155724588-155724423)
	194-358, gnl\|Mm7\|chr17 (3554887-3554722)