Ss1.1-Spl1-SPL01D060062.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGCCCACCTCTTGGTCTGGAAACCTTAAAAATCACAGACTTCCAGCTCCACGCGTCCAC TTCGAAGCGCTACGGCCTGGGGGCGCATCGAGGGAGACTCAACATCCAGGCGGGTATTAA TGAAAATGATTTCTACGACGGGGCGTGGTGTGCGGGAAGGAACGACCTCCATCAGTGGAT TGAAGTGGATGCCAGACGTCTGACCAAATTCACGGGTGTCATCACTCAAGGGAGGAACTC GCTCTGGTTGAGCGACTGGGTGACCTCCTACAAGGTCATGGTGAGCAATGACAGCCACAC GTGGGTCACTGTGAAGAATGGATCTGGAGACATGATATTTGAAGGCAACAGTGAAAAGGA GATCCCTGTCCTCAACGAGCTGCCCGTCCCCCTGGTGGCACGCTACATTCGCATCAACCC CCAGTCTTGGTTTGATAATGGCAGCATCTGCATGAGGATGGAGATTCTGGGCTGCCCGCT GCCAGATCCAAATAACTATTATCACCGACGGAATGAAATGACCACCACTGATGACCTGGA TTTTAAGCACCACAACTATAAGGAAATGCGTCAGTTAATGAAGGTTGTGAATGAAATGTG CCCCAACATCACCAGAATTTACAACATCGGCAAGAGCCACCAGGGCCTGAAGTTGTACGC CGTGGAGATCTCCGACCACCCTGGGGAGCACGAAGTCGGAGAGCCAGAGTTCCACTACAT CGCAGGGGCCCACGGTAATGAGGTGCTGGGCCGGGAGCTGATGCTTCTACTGATGCAGTT CCTGTGCCAGGAGTACTTGGCAAGCAACCCACGCATCGTCCACCTGGTGGAGGAGACCCG GATCCACATCCTCCCCTCCCTCAACCCGGACGGCTATGAGAAAGCCTACGAGGGGGGCTC AGAACTGGGAGGCTGGTCCCTGGGACGCTGGACCCATGACGGAATTGACATCAACAACAA CTTTCCTGACTTAAACACGCTGCTCTGGGAGGCAGAGGACCGACAGAACATCCCAAGGAA AGTGCCCAATCACTATATTGCAATCCCTGAGTGGTTTCTGTCCGAAAATGCCACGGTGGC GGCGGAGACCAGGGCCGTCATAGCCTGGATGGAAAAAATCCCCTTTGTGCTGGGCGGCAA CCTGCAGGGGGGCGAGCTGGTGGTGGCCTACCCTTACGACATGGTGAGGTCGCTGTGGAA GACGCAGGAGCACACCCCCACGCCCGACGACCACGTGTTCCGCTGGCTGGCCTACTCCTA CGCATCCACGCACCGCCTCATGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGCCCACCTCTTGGTCTGGAAACCTTAAAAATCACAGACTTCCAGCTCCACGCGTCCAC TTCGAAGCGCTACGGCCTGGGGGCGCATCGAGGGAGACTCAACATCCAGGCGGGTATTAA TGAAAATGATTTCTACGACGGGGCGTGGTGTGCGGGAAGGAACGACCTCCATCAGTGGAT TGAAGTGGATGCCAGACGTCTGACCAAATTCACGGGTGTCATCACTCAAGGGAGGAACTC GCTCTGGTTGAGCGACTGGGTGACCTCCTACAAGGTCATGGTGAGCAATGACAGCCACAC GTGGGTCACTGTGAAGAATGGATCTGGAGACATGATATTTGAAGGCAACAGTGAAAAGGA GATCCCTGTCCTCAACGAGCTGCCCGTCCCCCTGGTGGCACGCTACATTCGCATCAACCC CCAGTCTTGGTTTGATAATGGCAGCATCTGCATGAGGATGGAGATTCTGGGCTGCCCGCT GCCAGATCCAAATAACTATTATCACCGACGGAATGAAATGACCACCACTGATGACCTGGA TTTTAAGCACCACAACTATAAGGAAATGCGTCAGTTAATGAAGGTTGTGAATGAAATGTG CCCCAACATCACCAGAATTTACAACATCGGCAAGAGCCACCAGGGCCTGAAGTTGTACGC CGTGGAGATCTCCGACCACCCTGGGGAGCACGAAGTCGGAGAGCCAGAGTTCCACTACAT CGCAGGGGCCCACGGTAATGAGGTGCTGGGCCGGGAGCTGATGCTTCTACTGATGCAGTT CCTGTGCCAGGAGTACTTGGCAAGCAACCCACGCATCGTCCACCTGGTGGAGGAGACCCG GATCCACATCCTCCCCTCCCTCAACCCGGACGGCTATGAGAAAGCCTACGAGGGGGGCTC AGAACTGGGAGGCTGGTCCCTGGGACGCTGGACCCATGACGGAATTGACATCAACAACAA CTTTCCTGACTTAAACACGCTGCTCTGGGAGGCAGAGGACCGACAGAACATCCCAAGGAA AGTGCCCAATCACTATATTGCAATCCCTGAGTGGTTTCTGTCCGAAAATGCCACGGTGGC GGCGGAGACCAGGGCCGTCATAGCCTGGATGGAAAAAATCCCCTTTGTGCTGGGCGGCAA CCTGCAGGGGGGCGAGCTGGTGGTGGCCTACCCTTACGACATGGTGAGGTCGCTGTGGAA GACGCAGGAGCACACCCCCACGCCCGACGACCACGTGTTCCGCTGGCTGGCCTACTCCTA CGCATCCACGCACCGCCTCATGAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 77 entry(ies) | More info |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
| 107-250, gnl|bosTau2|chr1 (83683179-83683322) | |
| 107-250, gnl|canFam2|chr28 (36296752-36296890) | |
| 107-250, gnl|danRer3|chrNA (203816228-203816092) | |
| 107-250, gnl|dasNov1|scaffold_11804 (29744-29882) | |
| 107-250, gnl|echTel1|scaffold_324854 (56983-57121) | |
| 107-250, gnl|fr1|chrUn (25438595-25438728) | |
| 107-250, gnl|galGal2|chr6 (30978760-30978900) | |
| 107-250, gnl|hg17|chr10 (125591845-125591983) | |
| 107-250, gnl|Hg17|chr10 (125591997-125591854) | |
| 107-250, gnl|loxAfr1|scaffold_11350 (5691-5553) | |
| 107-250, gnl|mm7|chr7 (128511167-128511305) | |
| 107-250, gnl|Mm7|chr7 (128511319-128511176) | |
| 107-250, gnl|monDom2|scaffold_14 (34669170-34669032) | |
| 107-250, gnl|oryCun1|scaffold_213379 (6533-6395) | |
| 107-250, gnl|panTro1|chr8 (127966738-127966876) | |
| 107-250, gnl|rheMac2|chr9 (123441934-123442072) | |
| 107-250, gnl|rn3|chr1 (191725361-191725499) | |
| 107-250, gnl|xenTro1|scaffold_97 (2085201-2085339) | |
| 334-485, gnl|bosTau2|chr1 (83738887-83739038) | |
| 334-485, gnl|Hg17|chr10 (125547633-125547482) | |
| 334-485, gnl|Mm7|chr7 (128483818-128483667) | |
| 572-693, gnl|bosTau2|chr13 (41367983-41367862) | |
| 572-693, gnl|canFam2|chr24 (21454951-21454773) | |
| 572-693, gnl|danRer3|chr13 (9096208-9096338) | |
| 572-693, gnl|dasNov1|scaffold_34255 (15489-15589) | |
| 572-693, gnl|echTel1|scaffold_319903 (32106-31929) | |
| 572-693, gnl|fr1|chrUn (181821481-181821344) | |
| 572-693, gnl|galGal2|chr6 (30950887-30951043) | |
| 572-693, gnl|hg17|chr20 (2725152-2725328) | |
| 572-693, gnl|Hg17|chr20 (2725299-2725178) | |
| 572-693, gnl|loxAfr1|scaffold_139924 (1114-952) | |
| 572-693, gnl|mm7|chr2 (130135142-130135315) | |
| 572-693, gnl|Mm7|chr2 (130135289-130135168) | |
| 572-693, gnl|monDom2|scaffold_10 (48554644-48554810) | |
| 572-693, gnl|oryCun1|scaffold_191517 (5135-5305) | |
| 572-693, gnl|panTro1|chr21 (2701621-2701797) | |
| 572-693, gnl|rheMac2|chr10 (36105628-36105804) | |
| 572-693, gnl|rn3|chr3 (117910082-117910255) | |
| 572-693, gnl|tetNig1|chr20 (2932701-2932538) | |
| 572-693, gnl|xenTro1|scaffold_140 (1903909-1903756) | |
| 698-887, gnl|bosTau2|chr13 (41367770-41367581) | |
| 698-887, gnl|canFam2|chr24 (21455215-21455008) | |
| 698-887, gnl|danRer3|chr13 (9090976-9091182) | |
| 698-887, gnl|dasNov1|scaffold_34255 (14110-14312) | |
| 698-887, gnl|echTel1|scaffold_319903 (32389-32181) | |
| 698-887, gnl|fr1|chrUn (181822306-181822105) | |
| 698-887, gnl|galGal2|chr6 (30949579-30949781) | |
| 698-887, gnl|hg17|chr20 (2724886-2725093) | |
| 698-887, gnl|Hg17|chr20 (2725090-2724901) | |
| 698-887, gnl|mm7|chr2 (130134878-130135085) | |
| 698-887, gnl|Mm7|chr2 (130135082-130134893) | |
| 698-887, gnl|monDom2|scaffold_10 (48552292-48552500) | |
| 698-887, gnl|oryCun1|scaffold_191517 (4870-5077) | |
| 698-887, gnl|panTro1|chr21 (2701355-2701562) | |
| 698-887, gnl|rheMac2|chr10 (36105362-36105569) | |
| 698-887, gnl|rn3|chr3 (117909818-117910025) | |
| 698-887, gnl|tetNig1|chr20 (2932974-2932769) | |
| 698-887, gnl|xenTro1|scaffold_140 (1904281-1904079) | |
| 1075-1284, gnl|bosTau2|chr1 (83766491-83766700) | |
| 1075-1284, gnl|canFam2|chr28 (36233539-36233780) | |
| 1075-1284, gnl|danRer3|chrUn (27412568-27412244) | |
| 1075-1284, gnl|dasNov1|scaffold_34255 (5437-5678) | |
| 1075-1284, gnl|echTel1|scaffold_87093 (4566-4325) | |
| 1075-1284, gnl|fr1|chrUn (25431604-25431845) | |
| 1075-1284, gnl|galGal2|chr6 (30947356-30947593) | |
| 1075-1284, gnl|hg17|chr10 (125511370-125511611) | |
| 1075-1284, gnl|Hg17|chr10 (125511676-125511467) | |
| 1075-1284, gnl|loxAfr1|scaffold_13823 (39502-39261) | |
| 1075-1284, gnl|mm7|chr7 (128459617-128459858) | |
| 1075-1284, gnl|Mm7|chr7 (128459923-128459714) | |
| 1075-1284, gnl|monDom2|scaffold_14 (34772560-34772323) | |
| 1075-1284, gnl|oryCun1|scaffold_113648 (729-488) | |
| 1075-1284, gnl|panTro1|chr8 (127843380-127843621) | |
| 1075-1284, gnl|rheMac2|chr9 (123361755-123361996) | |
| 1075-1284, gnl|rn3|chr1 (191672604-191672844) | |
| 1075-1284, gnl|tetNig1|chr2_random (1610431-1610672) | |
| 1075-1284, gnl|xenTro1|scaffold_97 (2067011-2067248) |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 107-250, gnl|bosTau2|chr1 (83683179-83683322) | |
| 107-250, gnl|canFam2|chr28 (36296752-36296890) | |
| 107-250, gnl|danRer3|chrNA (203816228-203816092) | |
| 107-250, gnl|dasNov1|scaffold_11804 (29744-29882) | |
| 107-250, gnl|echTel1|scaffold_324854 (56983-57121) | |
| 107-250, gnl|fr1|chrUn (25438595-25438728) | |
| 107-250, gnl|galGal2|chr6 (30978760-30978900) | |
| 107-250, gnl|hg17|chr10 (125591845-125591983) | |
| 107-250, gnl|Hg17|chr10 (125591997-125591854) | |
| 107-250, gnl|loxAfr1|scaffold_11350 (5691-5553) | |
| 107-250, gnl|mm7|chr7 (128511167-128511305) | |
| 107-250, gnl|Mm7|chr7 (128511319-128511176) | |
| 107-250, gnl|monDom2|scaffold_14 (34669170-34669032) | |
| 107-250, gnl|oryCun1|scaffold_213379 (6533-6395) | |
| 107-250, gnl|panTro1|chr8 (127966738-127966876) | |
| 107-250, gnl|rheMac2|chr9 (123441934-123442072) | |
| 107-250, gnl|rn3|chr1 (191725361-191725499) | |
| 107-250, gnl|xenTro1|scaffold_97 (2085201-2085339) | |
| 334-485, gnl|bosTau2|chr1 (83738887-83739038) | |
| 334-485, gnl|Hg17|chr10 (125547633-125547482) | |
| 334-485, gnl|Mm7|chr7 (128483818-128483667) | |
| 572-693, gnl|bosTau2|chr13 (41367983-41367862) | |
| 572-693, gnl|canFam2|chr24 (21454951-21454773) | |
| 572-693, gnl|danRer3|chr13 (9096208-9096338) | |
| 572-693, gnl|dasNov1|scaffold_34255 (15489-15589) | |
| 572-693, gnl|echTel1|scaffold_319903 (32106-31929) | |
| 572-693, gnl|fr1|chrUn (181821481-181821344) | |
| 572-693, gnl|galGal2|chr6 (30950887-30951043) | |
| 572-693, gnl|hg17|chr20 (2725152-2725328) | |
| 572-693, gnl|Hg17|chr20 (2725299-2725178) | |
| 572-693, gnl|loxAfr1|scaffold_139924 (1114-952) | |
| 572-693, gnl|mm7|chr2 (130135142-130135315) | |
| 572-693, gnl|Mm7|chr2 (130135289-130135168) | |
| 572-693, gnl|monDom2|scaffold_10 (48554644-48554810) | |
| 572-693, gnl|oryCun1|scaffold_191517 (5135-5305) | |
| 572-693, gnl|panTro1|chr21 (2701621-2701797) | |
| 572-693, gnl|rheMac2|chr10 (36105628-36105804) | |
| 572-693, gnl|rn3|chr3 (117910082-117910255) | |
| 572-693, gnl|tetNig1|chr20 (2932701-2932538) | |
| 572-693, gnl|xenTro1|scaffold_140 (1903909-1903756) | |
| 698-887, gnl|bosTau2|chr13 (41367770-41367581) | |
| 698-887, gnl|canFam2|chr24 (21455215-21455008) | |
| 698-887, gnl|danRer3|chr13 (9090976-9091182) | |
| 698-887, gnl|dasNov1|scaffold_34255 (14110-14312) | |
| 698-887, gnl|echTel1|scaffold_319903 (32389-32181) | |
| 698-887, gnl|fr1|chrUn (181822306-181822105) | |
| 698-887, gnl|galGal2|chr6 (30949579-30949781) | |
| 698-887, gnl|hg17|chr20 (2724886-2725093) | |
| 698-887, gnl|Hg17|chr20 (2725090-2724901) | |
| 698-887, gnl|mm7|chr2 (130134878-130135085) | |
| 698-887, gnl|Mm7|chr2 (130135082-130134893) | |
| 698-887, gnl|monDom2|scaffold_10 (48552292-48552500) | |
| 698-887, gnl|oryCun1|scaffold_191517 (4870-5077) | |
| 698-887, gnl|panTro1|chr21 (2701355-2701562) | |
| 698-887, gnl|rheMac2|chr10 (36105362-36105569) | |
| 698-887, gnl|rn3|chr3 (117909818-117910025) | |
| 698-887, gnl|tetNig1|chr20 (2932974-2932769) | |
| 698-887, gnl|xenTro1|scaffold_140 (1904281-1904079) | |
| 1075-1284, gnl|bosTau2|chr1 (83766491-83766700) | |
| 1075-1284, gnl|canFam2|chr28 (36233539-36233780) | |
| 1075-1284, gnl|danRer3|chrUn (27412568-27412244) | |
| 1075-1284, gnl|dasNov1|scaffold_34255 (5437-5678) | |
| 1075-1284, gnl|echTel1|scaffold_87093 (4566-4325) | |
| 1075-1284, gnl|fr1|chrUn (25431604-25431845) | |
| 1075-1284, gnl|galGal2|chr6 (30947356-30947593) | |
| 1075-1284, gnl|hg17|chr10 (125511370-125511611) | |
| 1075-1284, gnl|Hg17|chr10 (125511676-125511467) | |
| 1075-1284, gnl|loxAfr1|scaffold_13823 (39502-39261) | |
| 1075-1284, gnl|mm7|chr7 (128459617-128459858) | |
| 1075-1284, gnl|Mm7|chr7 (128459923-128459714) | |
| 1075-1284, gnl|monDom2|scaffold_14 (34772560-34772323) | |
| 1075-1284, gnl|oryCun1|scaffold_113648 (729-488) | |
| 1075-1284, gnl|panTro1|chr8 (127843380-127843621) | |
| 1075-1284, gnl|rheMac2|chr9 (123361755-123361996) | |
| 1075-1284, gnl|rn3|chr1 (191672604-191672844) | |
| 1075-1284, gnl|tetNig1|chr2_random (1610431-1610672) | |
| 1075-1284, gnl|xenTro1|scaffold_97 (2067011-2067248) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| fcc (0.197785) | |
| bla (0.124347) |