Non-Coding RNA Search

Ss1.1-Spl1-SPL01D060072.5

Sequence:


               
               TTATTCCATTTGGATATAATTTCTCAACCTTGAGATTTTTTTTCCCTTTTCCTCTCTAGT
TTTTATTATTCTGTAAACATAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAATTACCCACA
AACCCAGAGTCTAATTGAGTGGCAACTTGGCTAGAATAAAGTTTAGTTCATGGACTCTTC
AATCATGTATCTTTTTCACAGGGTCAGTTTGCTGTCTAGTTTCCGTGCCAAGACTTTAAT
TTGGGTGACTTGCTATCTAGACGCACTGGAGTGGTGTGTTGCCTTTGGGATGCCTTCTAC
ACAAGGCCAAGAGCCTTCATTAAGGGGTTAATAGCTTGGAGTCTAGTGAGCTGTATCAGA
ACTTTTCATGATTCTGATTTAGAGTAGGAACTTGTCTCAGATGGCCTTGATCAGCTTTGT
TGGGGTTAGGAAGAAGCCCAAAGTTTCTTTTCATAATTGCACCTCAGAGGAGAGAAGGTG
TGACACAATGGATTTGACAGTGGTTTGTATGGGATTCAGTCATAGCTTGAAACTGTCCAG
CCTGTGTCATCATTGGAGGAGACTGACTGCTGAAACCCGGTGGGAAGACCTGCTTTTATC
AGGAAAGCCACCGGGAGGGATGGTCAGGAAATGAGGACAGCACAGGGGCCTGGGGCCCAT
GCAGCCAGGGCCAGGTCTGGCTGCTTCCCGCCACGGGCCGTTTTGCTTTCCTGCAGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTCCATTTGGATATAATTTCTCAACCTTGAGATTTTTTTTCCCTTTTCCTCTCTAGT
TTTTATTATTCTGTAAACATAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAATTACCCACA
AACCCAGAGTCTAATTGAGTGGCAACTTGGCTAGAATAAAGTTTAGTTCATGGACTCTTC
AATCATGTATCTTTTTCACAGGGTCAGTTTGCTGTCTAGTTTCCGTGCCAAGACTTTAAT
TTGGGTGACTTGCTATCTAGACGCACTGGAGTGGTGTGTTGCCTTTGGGATGCCTTCTAC
ACAAGGCCAAGAGCCTTCATTAAGGGGTTAATAGCTTGGAGTCTAGTGAGCTGTATCAGA
ACTTTTCATGATTCTGATTTAGAGTAGGAACTTGTCTCAGATGGCCTTGATCAGCTTTGT
TGGGGTTAGGAAGAAGCCCAAAGTTTCTTTTCATAATTGCACCTCAGAGGAGAGAAGGTG
TGACACAATGGATTTGACAGTGGTTTGTATGGGATTCAGTCATAGCTTGAAACTGTCCAG
CCTGTGTCATCATTGGAGGAGACTGACTGCTGAAACCCGGTGGGAAGACCTGCTTTTATC
AGGAAAGCCACCGGGAGGGATGGTCAGGAAATGAGGACAGCACAGGGGCCTGGGGCCCAT
GCAGCCAGGGCCAGGTCTGGCTGCTTCCCGCCACGGGCCGTTTTGCTTTCCTGCAGGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               625-714, + strand, RNAz p=0.853811

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               625-714, + strand, RNAz p=0.853811

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               97-714, gnl|bosTau2|chr18 (29973295-29972692)
               

               
               97-714, gnl|canFam2|chr5 (85666239-85665397)
               

               
               97-714, gnl|dasNov1|scaffold_8336 (44545-45379)
               

               
               97-714, gnl|echTel1|scaffold_197347 (4370-3610)
               

               
               97-714, gnl|hg17|chr16 (65207941-65208846)
               

               
               97-714, gnl|Hg17|chr16 (65208747-65208100)
               

               
               97-714, gnl|loxAfr1|scaffold_8971 (81947-82848)
               

               
               97-714, gnl|mm7|chr8 (102950506-102951217)
               

               
               97-714, gnl|panTro1|chr18 (59448137-59449022)
               

               
               97-714, gnl|rheMac2|chr20 (64883880-64884762)
               

               
               97-714, gnl|rn3|chr19 (577150-576480)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-714, gnl|bosTau2|chr18 (29973295-29972692)
               

               
               97-714, gnl|canFam2|chr5 (85666239-85665397)
               

               
               97-714, gnl|dasNov1|scaffold_8336 (44545-45379)
               

               
               97-714, gnl|echTel1|scaffold_197347 (4370-3610)
               

               
               97-714, gnl|hg17|chr16 (65207941-65208846)
               

               
               97-714, gnl|Hg17|chr16 (65208747-65208100)
               

               
               97-714, gnl|loxAfr1|scaffold_8971 (81947-82848)
               

               
               97-714, gnl|mm7|chr8 (102950506-102951217)
               

               
               97-714, gnl|panTro1|chr18 (59448137-59449022)
               

               
               97-714, gnl|rheMac2|chr20 (64883880-64884762)
               

               
               97-714, gnl|rn3|chr19 (577150-576480)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	97-714, gnl\|bosTau2\|chr18 (29973295-29972692)
	97-714, gnl\|canFam2\|chr5 (85666239-85665397)
	97-714, gnl\|dasNov1\|scaffold_8336 (44545-45379)
	97-714, gnl\|echTel1\|scaffold_197347 (4370-3610)
	97-714, gnl\|hg17\|chr16 (65207941-65208846)
	97-714, gnl\|Hg17\|chr16 (65208747-65208100)
	97-714, gnl\|loxAfr1\|scaffold_8971 (81947-82848)
	97-714, gnl\|mm7\|chr8 (102950506-102951217)
	97-714, gnl\|panTro1\|chr18 (59448137-59449022)
	97-714, gnl\|rheMac2\|chr20 (64883880-64884762)
	97-714, gnl\|rn3\|chr19 (577150-576480)