Ss1.1-Spl1-SPL01D060087.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATTAGTCAGGCCTCAAAAGATGGCGTCCTCGGAGCAGGCAGAGCAACCGAGCCAGCCA AACTCTATTCCAGGAAGTGAAAATGTGGTACCTCGAGAGCCACTGATTGCCACAGCAGTG AAGTTTCTACAGAATTCTCGGGTCCGCCAGAGCCCACTTGCAGCCAGGAGAGCATTCCTT AAGAAGAAAGGGCTGACAGATGAAGAGATTGATGTGGCTTTCCAGCAGTCAGGCTCGGCT GCCGATGAGCCTGCGTCCTTGGGCCCAGCCACACAGGTGGTTCCTGTCCAGCCCCCTCAC CTCATTCCGCAGCCATACAGCCCCGCGGGCTCCCGGTGGAGAGATTACAGCGCCTTGGCC ATCATCATGGCAGGGATTGCCTTCGGCTTTCACCAGCTCTACAAGAAATACCTGCTCCCC CTCATCATGGGCGGCCGGGAGGACAGGAAGCAACTGGAGAGGATGGAGGCGAGCCTCTCG GAGCTGAGTGGCAGCGTGGCCCAGACAGTGACTCAGTTACAGATGACGTTAGCCTCGGTC CAGGAGCTGCTAGTTCAGCAGCAGCAGAAAGTCCAGGAGCTCGCCCACGAACTGGCCACA GCCAAGGCCACCACGTCCACCAACTGGATGCTGGAGTCCCAGAACGTCAATGAGCTCAAG TCGGAAATTAACTCCTTGAAAGGGCTTCTTTTAAATCGGAGGCAGTTCCCACCCTCCCCG TCGGCCCCGAAGATCCCCTCCTGGCAGATCCCGGTCAAGTCGCCATCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATTAGTCAGGCCTCAAAAGATGGCGTCCTCGGAGCAGGCAGAGCAACCGAGCCAGCCA AACTCTATTCCAGGAAGTGAAAATGTGGTACCTCGAGAGCCACTGATTGCCACAGCAGTG AAGTTTCTACAGAATTCTCGGGTCCGCCAGAGCCCACTTGCAGCCAGGAGAGCATTCCTT AAGAAGAAAGGGCTGACAGATGAAGAGATTGATGTGGCTTTCCAGCAGTCAGGCTCGGCT GCCGATGAGCCTGCGTCCTTGGGCCCAGCCACACAGGTGGTTCCTGTCCAGCCCCCTCAC CTCATTCCGCAGCCATACAGCCCCGCGGGCTCCCGGTGGAGAGATTACAGCGCCTTGGCC ATCATCATGGCAGGGATTGCCTTCGGCTTTCACCAGCTCTACAAGAAATACCTGCTCCCC CTCATCATGGGCGGCCGGGAGGACAGGAAGCAACTGGAGAGGATGGAGGCGAGCCTCTCG GAGCTGAGTGGCAGCGTGGCCCAGACAGTGACTCAGTTACAGATGACGTTAGCCTCGGTC CAGGAGCTGCTAGTTCAGCAGCAGCAGAAAGTCCAGGAGCTCGCCCACGAACTGGCCACA GCCAAGGCCACCACGTCCACCAACTGGATGCTGGAGTCCCAGAACGTCAATGAGCTCAAG TCGGAAATTAACTCCTTGAAAGGGCTTCTTTTAAATCGGAGGCAGTTCCCACCCTCCCCG TCGGCCCCGAAGATCCCCTCCTGGCAGATCCCGGTCAAGTCGCCATCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 189-320, gnl|bosTau2|chr16 (22664613-22664482) | |
| 189-320, gnl|canFam2|chr2 (88233670-88233509) | |
| 189-320, gnl|dasNov1|scaffold_65319 (8498-8332) | |
| 189-320, gnl|echTel1|scaffold_315410 (42264-42145) | |
| 189-320, gnl|fr1|chrUn (147674580-147674738) | |
| 189-320, gnl|galGal2|chr21 (3649617-3649771) | |
| 189-320, gnl|hg17|chr1 (10593550-10593709) | |
| 189-320, gnl|Hg17|chr1 (10593559-10593690) | |
| 189-320, gnl|loxAfr1|scaffold_15664 (30356-30198) | |
| 189-320, gnl|mm7|chr4 (147973720-147973561) | |
| 189-320, gnl|Mm7|chr4 (147973709-147973578) | |
| 189-320, gnl|monDom2|scaffold_177 (63628-63467) | |
| 189-320, gnl|oryCun1|scaffold_175931 (61373-61215) | |
| 189-320, gnl|panTro1|chr1 (10791250-10791409) | |
| 189-320, gnl|rheMac2|chr1 (13691497-13691656) | |
| 189-320, gnl|rn3|chr5 (166074122-166073963) | |
| 189-320, gnl|tetNig1|chr9 (2245429-2245576) | |
| 189-320, gnl|xenTro1|scaffold_522 (166259-166409) | |
| 404-508, gnl|bosTau2|chr16 (22642785-22642681) | |
| 404-508, gnl|canFam2|chr2 (88214003-88213822) | |
| 404-508, gnl|danRer3|chr23 (40544284-40544437) | |
| 404-508, gnl|dasNov1|scaffold_91646 (3992-3808) | |
| 404-508, gnl|echTel1|scaffold_236865 (4960-4782) | |
| 404-508, gnl|fr1|chrUn (147678867-147679021) | |
| 404-508, gnl|galGal2|chr21 (3658516-3658702) | |
| 404-508, gnl|hg17|chr1 (10617326-10617508) | |
| 404-508, gnl|Hg17|chr1 (10617340-10617444) | |
| 404-508, gnl|loxAfr1|scaffold_30434 (29916-29737) | |
| 404-508, gnl|mm7|chr4 (147957184-147957005) | |
| 404-508, gnl|Mm7|chr4 (147957170-147957066) | |
| 404-508, gnl|monDom2|scaffold_177 (50774-50605) | |
| 404-508, gnl|oryCun1|scaffold_175931 (44857-44685) | |
| 404-508, gnl|panTro1|chr1 (10815002-10815184) | |
| 404-508, gnl|rheMac2|chr1 (13715223-13715405) | |
| 404-508, gnl|rn3|chr5 (166055432-166055253) | |
| 404-508, gnl|tetNig1|chr9 (2249322-2249462) | |
| 404-508, gnl|xenTro1|scaffold_522 (174882-175059) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 189-320, gnl|bosTau2|chr16 (22664613-22664482) | |
| 189-320, gnl|canFam2|chr2 (88233670-88233509) | |
| 189-320, gnl|dasNov1|scaffold_65319 (8498-8332) | |
| 189-320, gnl|echTel1|scaffold_315410 (42264-42145) | |
| 189-320, gnl|fr1|chrUn (147674580-147674738) | |
| 189-320, gnl|galGal2|chr21 (3649617-3649771) | |
| 189-320, gnl|hg17|chr1 (10593550-10593709) | |
| 189-320, gnl|Hg17|chr1 (10593559-10593690) | |
| 189-320, gnl|loxAfr1|scaffold_15664 (30356-30198) | |
| 189-320, gnl|mm7|chr4 (147973720-147973561) | |
| 189-320, gnl|Mm7|chr4 (147973709-147973578) | |
| 189-320, gnl|monDom2|scaffold_177 (63628-63467) | |
| 189-320, gnl|oryCun1|scaffold_175931 (61373-61215) | |
| 189-320, gnl|panTro1|chr1 (10791250-10791409) | |
| 189-320, gnl|rheMac2|chr1 (13691497-13691656) | |
| 189-320, gnl|rn3|chr5 (166074122-166073963) | |
| 189-320, gnl|tetNig1|chr9 (2245429-2245576) | |
| 189-320, gnl|xenTro1|scaffold_522 (166259-166409) | |
| 404-508, gnl|bosTau2|chr16 (22642785-22642681) | |
| 404-508, gnl|canFam2|chr2 (88214003-88213822) | |
| 404-508, gnl|danRer3|chr23 (40544284-40544437) | |
| 404-508, gnl|dasNov1|scaffold_91646 (3992-3808) | |
| 404-508, gnl|echTel1|scaffold_236865 (4960-4782) | |
| 404-508, gnl|fr1|chrUn (147678867-147679021) | |
| 404-508, gnl|galGal2|chr21 (3658516-3658702) | |
| 404-508, gnl|hg17|chr1 (10617326-10617508) | |
| 404-508, gnl|Hg17|chr1 (10617340-10617444) | |
| 404-508, gnl|loxAfr1|scaffold_30434 (29916-29737) | |
| 404-508, gnl|mm7|chr4 (147957184-147957005) | |
| 404-508, gnl|Mm7|chr4 (147957170-147957066) | |
| 404-508, gnl|monDom2|scaffold_177 (50774-50605) | |
| 404-508, gnl|oryCun1|scaffold_175931 (44857-44685) | |
| 404-508, gnl|panTro1|chr1 (10815002-10815184) | |
| 404-508, gnl|rheMac2|chr1 (13715223-13715405) | |
| 404-508, gnl|rn3|chr5 (166055432-166055253) | |
| 404-508, gnl|tetNig1|chr9 (2249322-2249462) | |
| 404-508, gnl|xenTro1|scaffold_522 (174882-175059) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| nje (0.16592) | |
| cty (0.10408) |