Non-Coding RNA Search

Ss1.1-Spl1-SPL01D070072.5

Sequence:


               
               CCACTCGCCTCGACTCCGCTTCTCCCCAGACTCCGTGGCTGAGGATCATGGGGCCCCGAG
CCCTCTTCCTGCTGCTCTCGGGGGCCCTGGCCCTGACTGGGACCCGGGCGGGTCCCCACT
CCCTGAGGTATTTCGACACCGCCGTGTCCCGGCCCGACCGCGGGAAGCCCCGTTTCATCG
AAGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCCAATCCGC
GGATGGAGCCTCGGGTGCCGTGGATAGAGAAGGAGGGGCAGGAGTATTGGGATAAGGAGA
CGGAGAACGCCATGGGCAGCGCACAGACTTTCCGAGTGAACCTGAAAAACCTGCGCGGCT
ACTACAACCAGAGCGAGGCCGGGTCTCACACCCTCCAGAGCATGTACGGCTGCGACGTGG
GACCAGACGGGCTCCTCCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACA
TCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCA
AGCGCAAGAGGGAGGCGGCCGATGCGGCGGAGCAAATGAGAAGCTACCTGGAGGGCGCGT
GTGTGGAGTGGCTCCAGAAATACCTGCAGATGGGGAAGGACACGCTGCAGCACGCAGAGC
CTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCT
GGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCCAGGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACTCGCCTCGACTCCGCTTCTCCCCAGACTCCGTGGCTGAGGATCATGGGGCCCCGAG
CCCTCTTCCTGCTGCTCTCGGGGGCCCTGGCCCTGACTGGGACCCGGGCGGGTCCCCACT
CCCTGAGGTATTTCGACACCGCCGTGTCCCGGCCCGACCGCGGGAAGCCCCGTTTCATCG
AAGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCCAATCCGC
GGATGGAGCCTCGGGTGCCGTGGATAGAGAAGGAGGGGCAGGAGTATTGGGATAAGGAGA
CGGAGAACGCCATGGGCAGCGCACAGACTTTCCGAGTGAACCTGAAAAACCTGCGCGGCT
ACTACAACCAGAGCGAGGCCGGGTCTCACACCCTCCAGAGCATGTACGGCTGCGACGTGG
GACCAGACGGGCTCCTCCTCCGCGGGTACAGTCAGGACGCCTACGACGGCGCCGATTACA
TCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCA
AGCGCAAGAGGGAGGCGGCCGATGCGGCGGAGCAAATGAGAAGCTACCTGGAGGGCGCGT
GTGTGGAGTGGCTCCAGAAATACCTGCAGATGGGGAAGGACACGCTGCAGCACGCAGAGC
CTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCT
GGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCCAGGACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51507639|emb|CAE46345.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51507639|emb|CAE46345.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               6-113, gnl|bosTau2|chr23 (23049906-23049799)
               

               
               6-113, gnl|Hg17|chr6 (30002183-30002288)
               

               
               6-113, gnl|Mm7|chr17 (34474647-34474547)
               


               
               115-382, gnl|bosTau2|chr23 (20551142-20551409)
               

               
               115-382, gnl|Hg17|chr6 (31432710-31432443)
               

               
               115-382, gnl|Mm7|chr17 (33358731-33358998)
               


               
               415-665, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               415-665, gnl|Hg17|chr6 (31347071-31346829)
               

               
               415-665, gnl|Mm7|chr17 (32077846-32077606)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-113, gnl|bosTau2|chr23 (23049906-23049799)
               

               
               6-113, gnl|Hg17|chr6 (30002183-30002288)
               

               
               6-113, gnl|Mm7|chr17 (34474647-34474547)
               


               
               115-382, gnl|bosTau2|chr23 (20551142-20551409)
               

               
               115-382, gnl|Hg17|chr6 (31432710-31432443)
               

               
               115-382, gnl|Mm7|chr17 (33358731-33358998)
               


               
               415-665, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               415-665, gnl|Hg17|chr6 (31347071-31346829)
               

               
               415-665, gnl|Mm7|chr17 (32077846-32077606)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               med (0.116252)

	6-113, gnl\|bosTau2\|chr23 (23049906-23049799)
	6-113, gnl\|Hg17\|chr6 (30002183-30002288)
	6-113, gnl\|Mm7\|chr17 (34474647-34474547)

	115-382, gnl\|bosTau2\|chr23 (20551142-20551409)
	115-382, gnl\|Hg17\|chr6 (31432710-31432443)
	115-382, gnl\|Mm7\|chr17 (33358731-33358998)

	415-665, gnl\|bosTau2\|chr20 (36655627-36655873)
	415-665, gnl\|Hg17\|chr6 (31347071-31346829)
	415-665, gnl\|Mm7\|chr17 (32077846-32077606)