Ss1.1-Spl1-SPL01D070085.5
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TGATTTTTAAGGTATATTTTGCAGAGTTTCATTTCCCTGTGCATTTCTTCACCTTCTTCT
ACTTCTTGGGGTAACGGAGAGAAAGAATTTTAGGAACATTTTCTAAAAGGATAACCTTTA
ATATGTTTAGTTCAAATAAACATCCCAAACAAGGCCCCACGTAAGCATTGTAGGCGGGTT
GCTTTCGAGGCGATTAATGGTGTGTGGAAGCAGAGGCGGAGTTCTGCTCATCAAAAGACA
TTTATAAACAGTGTTTTTAAAGAGCGAAAGGGAGTGGACAGAATCCTTGCAGGAGGCTTT
CGCCTCTGATAACAGGAGGATCTTAAGAGAGCATCGACAGGCAGGCAGAGTTTCTTATTT
GGCTGGCTCTTTGGTGTATCTTAATTCCTGGGACCTCTTAGAGTTATTTGTTGAAAACGT
ATACAAATGATTCACCCCAGAGTAAAGGGCCGCCTCAGGACGGGGCCCCTGGCATTACCT
GCTAAGGAGTCCCGGCGTGCAGGGTGCTCGTGGAGCCCAGCTGAGACCTGCTTGAGGTGT
GTTTGCTCTTCTGGGAAATGAGCGCACGGCGCCCCGGTCTGGGGCCAGCCAGCGCTTCTA
GAAGGGCTCGGGGAGTAGATGCTCTTTGGGGCTTTGCAGGCCAGTGTGTCTGTGACAGCA
GGCAGCTCTGCCGTTTTAGCCCAGACCCCTCGTAGAGGTGGAGCCGGCAGTGTCCCCACA
TAGAACCTTATCGCCAAAGCAGGTGACAGGCCAAGTCTGTCCCTGGGGGTGTCCTTCAGC
CCTGGGACAGAGGACGACTACTCATGGGGAAATCACTTCTGAACGTGTGCTCCGATGGCC
CAAAGGAGCCCATATCCTCCCCCAAAGCTCCCCATGTGTGTCCAGGGAAGAGCTTCCCAT
TCAGGCGGTGCCCCCAGATTCAGAGACTTTGACGACGTACCTCGCTTCCAGGTGGGCTTT
TTTCTTTGCCAGTGTGACCGGCAGGTGGGCGTCGATGCCACGGCCTCGGAGGTGGGTTAG
ACGCACCCTTTCCTGAGGCCGAGGAAGGGCTAGGGACCATTCTGCATGGTCGGGACCGTC
CGGGGCGTCGGACACGTGCAGAGCCCTCATCGTACCTAACTTTGTCATCAAATAAATAGA
ACCACTGAGATGATAATGTATTTTTTTAAAGTGGCAAATACGGTTTTCTTTTTTCAGGCT
TTGTGCTTTTTCAGTATTTTGAACATAGGGAAATTTTCTTTTTATAATACAAGAGCAGAT
TAACCACTTTGAATTTTACAAGACAATGTTATGTGTGTATGTGTATCTCTCTATATATGT
TTATTTCCTAAAAGAGGACAAAGTACTTTTTTGTTCGACTTGTTATCGACTCCTGTTTTC
TAATTGCTGTGAAATGGCAACTGTTGATAAATTATTGAGACTGTTTTACAATGTAACGGG
GAGGATATATTTTGATTTTACCCAGCTTTAATCTGTAAAGTGTCCCTTAAATATAATCTG
ATAGCAACACTGAAAAAATATTGCATGGGAGTTACTTTTCTGTCTCATCCACATACCCAT
TTGTGCAACTTTGAACATACCGGGTGCTTCTGAATTCCCGATAATTGGGTTGAAATGACT
GAAAATCAGAGAAAAACGTACTGACTTTTAAACTTTGACTTTTATTTTCCATTCTTAAAA
TTCAGTTAATGCCTATAACTTGAAATCTCCTGCTGGCTCTTTCTCAGTACAAGTCCTATT
GGAAACTCTTTAAACTGTTAGTGCCATCAGCGGCTTACAAGCAGTATTTTGATATTTCAG
ATGATTTGCTCATTGTATTTGCATAGTTAGAAAGAAAATAGTTTGTAGACAATGGCTCTC
TTTTTCTAATAAAATGAAATAAAAATTCCAAAAGCA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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TGATTTTTAAGGTATATTTTGCAGAGTTTCATTTCCCTGTGCATTTCTTCACCTTCTTCT
ACTTCTTGGGGTAACGGAGAGAAAGAATTTTAGGAACATTTTCTAAAAGGATAACCTTTA
ATATGTTTAGTTCAAATAAACATCCCAAACAAGGCCCCACGTAAGCATTGTAGGCGGGTT
GCTTTCGAGGCGATTAATGGTGTGTGGAAGCAGAGGCGGAGTTCTGCTCATCAAAAGACA
TTTATAAACAGTGTTTTTAAAGAGCGAAAGGGAGTGGACAGAATCCTTGCAGGAGGCTTT
CGCCTCTGATAACAGGAGGATCTTAAGAGAGCATCGACAGGCAGGCAGAGTTTCTTATTT
GGCTGGCTCTTTGGTGTATCTTAATTCCTGGGACCTCTTAGAGTTATTTGTTGAAAACGT
ATACAAATGATTCACCCCAGAGTAAAGGGCCGCCTCAGGACGGGGCCCCTGGCATTACCT
GCTAAGGAGTCCCGGCGTGCAGGGTGCTCGTGGAGCCCAGCTGAGACCTGCTTGAGGTGT
GTTTGCTCTTCTGGGAAATGAGCGCACGGCGCCCCGGTCTGGGGCCAGCCAGCGCTTCTA
GAAGGGCTCGGGGAGTAGATGCTCTTTGGGGCTTTGCAGGCCAGTGTGTCTGTGACAGCA
GGCAGCTCTGCCGTTTTAGCCCAGACCCCTCGTAGAGGTGGAGCCGGCAGTGTCCCCACA
TAGAACCTTATCGCCAAAGCAGGTGACAGGCCAAGTCTGTCCCTGGGGGTGTCCTTCAGC
CCTGGGACAGAGGACGACTACTCATGGGGAAATCACTTCTGAACGTGTGCTCCGATGGCC
CAAAGGAGCCCATATCCTCCCCCAAAGCTCCCCATGTGTGTCCAGGGAAGAGCTTCCCAT
TCAGGCGGTGCCCCCAGATTCAGAGACTTTGACGACGTACCTCGCTTCCAGGTGGGCTTT
TTTCTTTGCCAGTGTGACCGGCAGGTGGGCGTCGATGCCACGGCCTCGGAGGTGGGTTAG
ACGCACCCTTTCCTGAGGCCGAGGAAGGGCTAGGGACCATTCTGCATGGTCGGGACCGTC
CGGGGCGTCGGACACGTGCAGAGCCCTCATCGTACCTAACTTTGTCATCAAATAAATAGA
ACCACTGAGATGATAATGTATTTTTTTAAAGTGGCAAATACGGTTTTCTTTTTTCAGGCT
TTGTGCTTTTTCAGTATTTTGAACATAGGGAAATTTTCTTTTTATAATACAAGAGCAGAT
TAACCACTTTGAATTTTACAAGACAATGTTATGTGTGTATGTGTATCTCTCTATATATGT
TTATTTCCTAAAAGAGGACAAAGTACTTTTTTGTTCGACTTGTTATCGACTCCTGTTTTC
TAATTGCTGTGAAATGGCAACTGTTGATAAATTATTGAGACTGTTTTACAATGTAACGGG
GAGGATATATTTTGATTTTACCCAGCTTTAATCTGTAAAGTGTCCCTTAAATATAATCTG
ATAGCAACACTGAAAAAATATTGCATGGGAGTTACTTTTCTGTCTCATCCACATACCCAT
TTGTGCAACTTTGAACATACCGGGTGCTTCTGAATTCCCGATAATTGGGTTGAAATGACT
GAAAATCAGAGAAAAACGTACTGACTTTTAAACTTTGACTTTTATTTTCCATTCTTAAAA
TTCAGTTAATGCCTATAACTTGAAATCTCCTGCTGGCTCTTTCTCAGTACAAGTCCTATT
GGAAACTCTTTAAACTGTTAGTGCCATCAGCGGCTTACAAGCAGTATTTTGATATTTCAG
ATGATTTGCTCATTGTATTTGCATAGTTAGAAAGAAAATAGTTTGTAGACAATGGCTCTC
TTTTTCTAATAAAATGAAATAAAAATTCCAAAAGCA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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4-1150, gnl|bosTau2|chr3 (41788261-41787109) |
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4-1150, gnl|Hg17|chr1 (87284155-87285187) |
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4-1150, gnl|Mm7|chr3 (144325853-144324859) |
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1586-1895, gnl|bosTau2|chr3 (41787058-41786753) |
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1586-1895, gnl|canFam2|chr6 (64184085-64183888) |
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1586-1895, gnl|dasNov1|scaffold_175203 (3200-2999) |
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1586-1895, gnl|echTel1|scaffold_292160 (43893-44095) |
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1586-1895, gnl|hg17|chr1 (87285623-87285806) |
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1586-1895, gnl|Hg17|chr1 (87285622-87285902) |
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1586-1895, gnl|loxAfr1|scaffold_1204 (89902-89695) |
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1586-1895, gnl|mm7|chr3 (144324456-144324254) |
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1586-1895, gnl|Mm7|chr3 (144324455-144324160) |
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1586-1895, gnl|monDom2|scaffold_123 (1007122-1007279) |
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1586-1895, gnl|panTro1|chr1 (85945637-85945820) |
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1586-1895, gnl|rheMac2|chr1 (89808530-89808713) |
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1586-1895, gnl|rn3|chr2 (242608587-242608386) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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4-1150, gnl|bosTau2|chr3 (41788261-41787109) |
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4-1150, gnl|Hg17|chr1 (87284155-87285187) |
|
4-1150, gnl|Mm7|chr3 (144325853-144324859) |
| |
|
1586-1895, gnl|bosTau2|chr3 (41787058-41786753) |
|
1586-1895, gnl|canFam2|chr6 (64184085-64183888) |
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1586-1895, gnl|dasNov1|scaffold_175203 (3200-2999) |
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1586-1895, gnl|echTel1|scaffold_292160 (43893-44095) |
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1586-1895, gnl|hg17|chr1 (87285623-87285806) |
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1586-1895, gnl|Hg17|chr1 (87285622-87285902) |
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1586-1895, gnl|loxAfr1|scaffold_1204 (89902-89695) |
|
1586-1895, gnl|mm7|chr3 (144324456-144324254) |
|
1586-1895, gnl|Mm7|chr3 (144324455-144324160) |
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1586-1895, gnl|monDom2|scaffold_123 (1007122-1007279) |
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1586-1895, gnl|panTro1|chr1 (85945637-85945820) |
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1586-1895, gnl|rheMac2|chr1 (89808530-89808713) |
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1586-1895, gnl|rn3|chr2 (242608587-242608386) |
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gul (0.177588) |
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rec (0.17307) |
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fat (0.147427) |
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csk (0.140746) |
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pgl (0.118483) |
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gul (0.177588) |
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rec (0.17307) |
|
fat (0.147427) |
|
csk (0.140746) |
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pgl (0.118483) |
